itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage > Class Template Reference

#include <itkMRIBiasFieldCorrectionFilter.h>

Inheritance diagram for itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >:

[legend]Collaboration diagram for itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >:

[legend]List of all members.

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Detailed Description

template<class TInputImage, class TOutputImage, class TMaskImage>
class itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >

corrects 3D MRI bias field

This class is templated over the type of the input image (TInputImage) and the type of the output image (TOutputImage).

In MRI images, intensity inhomogenieties which are caused by magnetic settings, patients' postion, and other factors are not unusual. The main purpose of this filter is to reduce such bias field. To estimate the bias field, we use Legendre polynomials. The 1+1 evolutionary optimizer searches for the best paramters of a Legendre polynomial (bias field estimate) which minimizes the total energy value of each image after bias field is eleminated. The default Legendre polynomial degree is 3.

The correction performes by default a multiplicative bias field correction by first log-transforming the input image. This log transform only works on images with grayscale values bigger than 0. The log-transform can be disabled and the filter computes an additive bias field.

There are three major processes in the whole bias correction scheme: slab identification, inter-slice intensity correction, and actual bias correction process. Users can turn on and off each process within the whole bias correction scheme using SetUsingSlabIdentification(bool, false by default), SetUsingInterSliceIntensityCorrection(bool, true by default), and SetUsingBiasFieldCorrection(bool, true by default) member function.

Only the last process (the actual bias field correction) is implemented in a multiresolution framework (without smoothing). Default is a standard level 2 multiresolution schedule (2 2 2 1 1 1)

The bias field correction method was initially developed and implemented by Martin Styner, Univ. of North Carolina at Chapel Hill, and his colleagues.

The multiresolution pyramid implementation is based on itkMultiTesolutionPyramidImageFilter (without Gaussian smoothing)

For more details. refer to the following articles. "Parametric estimate of intensity inhomogeneities applied to MRI" Martin Styner, Guido Gerig, Christian Brechbuehler, Gabor Szekely, IEEE TRANSACTIONS ON MEDICAL IMAGING; 19(3), pp. 153-165, 2000, (http://www.cs.unc.edu/~styner/docs/tmi00.pdf)

"Evaluation of 2D/3D bias correction with 1+1ES-optimization" Martin Styner, Prof. Dr. G. Gerig (IKT, BIWI, ETH Zuerich), TR-197 (http://www.cs.unc.edu/~styner/docs/StynerTR97.pdf)

Definition at line 231 of file itkMRIBiasFieldCorrectionFilter.h.

Public Types
typedef MultivariateLegendrePolynomial	BiasFieldType
typedef SmartPointer< const Self >	ConstPointer
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector< DataObjectPointer >	DataObjectPointerArray
typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType
typedef EnergyFunctionType::Pointer	EnergyFunctionPointer
typedef MRIBiasEnergyFunction< InternalImageType, ImageMaskType, BiasFieldType >	EnergyFunctionType
typedef ImageMaskType::Pointer	ImageMaskPointer
typedef ImageMaskType::RegionType	ImageMaskRegionType
typedef TMaskImage	ImageMaskType
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef TInputImage::IndexType	InputImageIndexType
typedef TInputImage::PixelType	InputImagePixelType
typedef TInputImage::Pointer	InputImagePointer
typedef TInputImage::RegionType	InputImageRegionType
typedef TInputImage::SizeType	InputImageSizeType
typedef TInputImage	InputImageType
typedef MRASlabIdentifier< InputImageType >	MRASlabIdentifierType
typedef Statistics::NormalVariateGenerator	NormalVariateGeneratorType
typedef OnePlusOneEvolutionaryOptimizer	OptimizerType
typedef TOutputImage::IndexType	OutputImageIndexType
typedef TOutputImage::PixelType	OutputImagePixelType
typedef TOutputImage::Pointer	OutputImagePointer
typedef TOutputImage::RegionType	OutputImageRegionType
typedef TOutputImage::SizeType	OutputImageSizeType
typedef TOutputImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef Array2D< unsigned int >	ScheduleType
typedef MRIBiasFieldCorrectionFilter	Self
typedef SlabRegionVectorType::iterator	SlabRegionVectorIteratorType
typedef MRASlabIdentifierType::SlabRegionVectorType	SlabRegionVectorType
typedef ImageToImageFilter< TInputImage, TOutputImage >	Superclass
typedef InternalImageType::PixelType	InternalImagePixelType
typedef InternalImageType::Pointer	InternalImagePointer
typedef InternalImageType::RegionType	InternalImageRegionType
typedef Image< float, itkGetStaticConstMacro(ImageDimension) >	InternalImageType
Public Member Functions
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
void	CorrectImage (BiasFieldType &bias, InputImageRegionType region)
void	CorrectInterSliceIntensityInhomogeneity (InputImageRegionType region)
virtual LightObject::Pointer	CreateAnother () const
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
BiasFieldType	EstimateBiasField (InputImageRegionType region, unsigned int degree, int maximumIteration)
virtual const bool &	GetAbortGenerateData ()
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
BiasFieldType::CoefficientArrayType	GetEstimatedBiasFieldCoefficients ()
DataObjectPointerArray &	GetInputs ()
const MetaDataDictionary &	GetMetaDataDictionary (void) const
MetaDataDictionary &	GetMetaDataDictionary (void)
virtual unsigned long	GetMTime () const
MultiThreader *	GetMultiThreader ()
virtual const char *	GetNameOfClass () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
virtual unsigned int	GetNumberOfLevels ()
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
virtual double	GetOptimizerShrinkFactor ()
virtual ImageMaskType *	GetOutputMask ()
virtual const float &	GetProgress ()
virtual int	GetReferenceCount () const
virtual const ScheduleType &	GetSchedule ()
virtual const InputImagePixelType &	GetSlabBackgroundMinimumThreshold ()
virtual const unsigned int &	GetSlabNumberOfSamples ()
virtual const double &	GetSlabTolerance ()
const unsigned int *	GetStartingShrinkFactors () const
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (DataObject *output)
bool	HasObserver (const EventObject &event) const
void	Initialize () throw (ExceptionObject)
void	InvokeEvent (const EventObject &) const
void	InvokeEvent (const EventObject &)
bool	IsBiasFieldMultiplicative ()
void	IsBiasFieldMultiplicative (bool flag)
	itkStaticConstMacro (ImageDimension, unsigned int, TOutputImage::ImageDimension)
virtual DataObjectPointer	MakeOutput (unsigned int idx)
virtual void	Modified () const
virtual void	PrepareOutputs ()
void	Print (std::ostream &os, Indent indent=0) const
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
void	SetDebug (bool debugFlag) const
void	SetInitialBiasFieldCoefficients (const BiasFieldType::CoefficientArrayType &coefficients)
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
void	SetNumberOfLevels (unsigned int num)
virtual void	SetOptimizerShrinkFactor (double _arg)
void	SetOutputMask (ImageMaskType *outputMask)
virtual void	SetProgress (float _arg)
virtual void	SetReferenceCount (int)
void	SetSchedule (const ScheduleType &schedule)
virtual void	SetSlabBackgroundMinimumThreshold (InputImagePixelType _arg)
virtual void	SetSlabNumberOfSamples (unsigned int _arg)
virtual void	SetSlabTolerance (double _arg)
virtual void	SetSlicingDirection (int _arg)
void	SetTissueClassStatistics (const Array< double > &means, const Array< double > &sigmas) throw (ExceptionObject)
virtual void	UnRegister () const
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
unsigned long	AddObserver (const EventObject &event, Command *) const
unsigned long	AddObserver (const EventObject &event, Command *)
virtual int	GetBiasFieldDegree ()
virtual void	SetBiasFieldDegree (int _arg)
virtual const bool &	GetGeneratingOutput ()
virtual void	SetGeneratingOutput (bool _arg)
const InputImageType *	GetInput (unsigned int idx)
const InputImageType *	GetInput (void)
virtual void	SetInput (unsigned int, const TInputImage *image)
virtual void	SetInput (const InputImageType *image)
virtual ImageMaskType *	GetInputMask ()
void	SetInputMask (ImageMaskType *inputMask)
virtual int	GetInterSliceCorrectionMaximumIteration ()
virtual int	GetVolumeCorrectionMaximumIteration ()
virtual void	SetInterSliceCorrectionMaximumIteration (int _arg)
virtual void	SetVolumeCorrectionMaximumIteration (int _arg)
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
DataObjectPointerArray &	GetOutputs ()
virtual const int &	GetNumberOfThreads ()
virtual void	SetNumberOfThreads (int _arg)
virtual double	GetOptimizerGrowthFactor ()
virtual void	SetOptimizerGrowthFactor (double _arg)
double	GetOptimizerInitialRadius ()
void	SetOptimizerInitialRadius (double initRadius)
OutputImageType *	GetOutput (unsigned int idx)
OutputImageType *	GetOutput (void)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOff ()
void	ReleaseDataFlagOn ()
virtual void	SetReleaseDataFlag (bool flag)
virtual const bool &	GetUsingBiasFieldCorrection ()
virtual void	SetUsingBiasFieldCorrection (bool _arg)
virtual const bool &	GetUsingInterSliceIntensityCorrection ()
virtual void	SetUsingInterSliceIntensityCorrection (bool _arg)
virtual const bool &	GetUsingSlabIdentification ()
virtual void	SetUsingSlabIdentification (bool _arg)
	itkStaticConstMacro (OutputImageDimension, unsigned int, TOutputImage::ImageDimension)
	itkStaticConstMacro (InputImageDimension, unsigned int, TInputImage::ImageDimension)
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
void	SetStartingShrinkFactors (unsigned int *factors)
void	SetStartingShrinkFactors (unsigned int factor)
Static Public Member Functions
static void	BreakOnError ()
static bool	IsScheduleDownwardDivisible (const ScheduleType &schedule)
static Pointer	New ()
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static void	SetGlobalWarningDisplay (bool flag)
Protected Types
typedef ImageToImageFilterDetail::ImageRegionCopier< itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension)>	InputToOutputRegionCopierType
typedef ImageToImageFilterDetail::ImageRegionCopier< itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension)>	OutputToInputRegionCopierType
Protected Member Functions
void	AdjustSlabRegions (SlabRegionVectorType &slabs, OutputImageRegionType requestedRegion)
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	BeforeThreadedGenerateData ()
virtual void	CacheInputReleaseDataFlags ()
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
bool	CheckMaskImage (ImageMaskType *mask)
template<class TSource, class TTarget>
void	CopyAndConvertImage (const TSource *source, TTarget *target, typename TTarget::RegionType requestedRegion)
void	ExpImage (InternalImageType *source, InternalImageType *target)
void	GenerateData ()
virtual void	GenerateInputRequestedRegion ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
void	GetBiasFieldSize (InputImageRegionType region, BiasFieldType::DomainSizeType &domainSize)
void	Log1PImage (InternalImageType *source, InternalImageType *target)
	MRIBiasFieldCorrectionFilter ()
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RestoreInputReleaseDataFlags ()
void	SetNumberOfInputs (unsigned int num)
void	SetNumberOfOutputs (unsigned int num)
virtual int	SplitRequestedRegion (int i, int num, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, int threadId) ITK_NO_RETURN
virtual	~MRIBiasFieldCorrectionFilter ()
virtual void	AddInput (DataObject *input)
virtual const unsigned int &	GetNumberOfRequiredInputs ()
virtual void	RemoveInput (DataObject *input)
virtual void	SetNthInput (unsigned int num, DataObject *input)
virtual void	SetNumberOfRequiredInputs (unsigned int _arg)
virtual void	AddOutput (DataObject *output)
virtual const unsigned int &	GetNumberOfRequiredOutputs ()
virtual void	RemoveOutput (DataObject *output)
virtual void	SetNthOutput (unsigned int num, DataObject *output)
virtual void	SetNumberOfRequiredOutputs (unsigned int _arg)
const DataObject *	GetInput (unsigned int idx) const
const DataObject *	GetOutput (unsigned int idx) const
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
void	PushBackInput (const DataObject *input)
void	PushFrontInput (const DataObject *input)
Static Protected Member Functions
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
Protected Attributes
TimeStamp	m_OutputInformationMTime
volatile int	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock
bool	m_Updating

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Member Typedef Documentation

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef MultivariateLegendrePolynomial itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::BiasFieldType

Bias field object type defintion.

Definition at line 285 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef SmartPointer<const Self> itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::ConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 239 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TOutputImage>

typedef DataObject::Pointer itk::ImageSource< TOutputImage >::DataObjectPointer [inherited]

Smart Pointer type to a DataObject.

Reimplemented from itk::ProcessObject.

Reimplemented in itk::LabelStatisticsImageFilter< TInputImage, TLabelImage >, itk::MinimumMaximumImageFilter< TInputImage >, itk::StatisticsImageFilter< TInputImage >, and itk::StreamingImageFilter< TInputImage, TOutputImage >.

Definition at line 62 of file itkImageSource.h.

typedef std::vector<DataObjectPointer> itk::ProcessObject::DataObjectPointerArray [inherited]

STL Array of SmartPointers to DataObjects

Definition at line 103 of file itkProcessObject.h.

typedef DataObjectPointerArray::size_type itk::ProcessObject::DataObjectPointerArraySizeType [inherited]

Size type of an std::vector

Definition at line 112 of file itkProcessObject.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef EnergyFunctionType::Pointer itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::EnergyFunctionPointer

Definition at line 291 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef MRIBiasEnergyFunction<InternalImageType, ImageMaskType, BiasFieldType> itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::EnergyFunctionType

Energy function type defintion.

Definition at line 290 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef ImageMaskType::Pointer itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::ImageMaskPointer

Definition at line 267 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef ImageMaskType::RegionType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::ImageMaskRegionType

Definition at line 268 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TMaskImage itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::ImageMaskType

Mask image related type definitions.

Definition at line 266 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage>

typedef InputImageType::ConstPointer itk::ImageToImageFilter< TInputImage, TOutputImage >::InputImageConstPointer [inherited]

Reimplemented in itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >, itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >, itk::IsolatedWatershedImageFilter< TInputImage, TOutputImage >, itk::KLMRegionGrowImageFilter< TInputImage, TOutputImage >, itk::MRFImageFilter< TInputImage, TClassifiedImage >, itk::MultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::RecursiveMultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::RegionGrowImageFilter< TInputImage, TOutputImage >, itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >, itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage, TBinaryPriorImage >, itk::BinomialBlurImageFilter< TInputImage, TOutputImage >, itk::BlackTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::BloxBoundaryPointToCoreAtomImageFilter< dim >, itk::BloxBoundaryProfileImageToBloxCoreAtomImageFilter< TInputImage, TOutputImage, TSourceImage >, itk::BSplineDecompositionImageFilter< TInputImage, TOutputImage >, itk::CheckerBoardImageFilter< TImage >, itk::ClosingByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >, itk::FlipImageFilter< TImage >, itk::GradientImageToBloxBoundaryPointImageFilter< TInputImage >, itk::GrayscaleConnectedClosingImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedOpeningImageFilter< TInputImage, TOutputImage >, itk::GrayscaleFillholeImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGrindPeakImageFilter< TInputImage, TOutputImage >, itk::HConcaveImageFilter< TInputImage, TOutputImage >, itk::HConvexImageFilter< TInputImage, TOutputImage >, itk::HMaximaImageFilter< TInputImage, TOutputImage >, itk::HMinimaImageFilter< TInputImage, TOutputImage >, itk::HoughTransform2DCirclesImageFilter< TInputPixelType, TOutputPixelType >, itk::HoughTransform2DLinesImageFilter< TInputPixelType, TOutputPixelType >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::IsolatedConnectedImageFilter< TInputImage, TOutputImage >, itk::IterativeInverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::NonThreadedShrinkImageFilter< TInputImage, TOutputImage >, itk::OpeningByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::OrientImageFilter< TInputImage, TOutputImage >, itk::PolylineMask2DImageFilter< TInputImage, TPolyline, TOutputImage >, itk::RecursiveSeparableImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ShrinkImageFilter< TInputImage, TOutputImage >, itk::TobogganImageFilter< TInputImage >, itk::TwoOutputExampleImageFilter< TImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::WarpImageFilter< TInputImage, TOutputImage, TDeformationField >, itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >, itk::WhiteTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::WrapPadImageFilter< TInputImage, TOutputImage >, itk::InPlaceImageFilter< TInputImage, TOutputImage >, itk::SimpleFuzzyConnectednessImageFilterBase< TInputImage, TOutputImage >, itk::MorphologicalWatershedFromMarkersImageFilter< TInputImage, TLabelImage >, itk::MorphologicalWatershedImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::RegionalMaximaImageFilter< TInputImage, TOutputImage >, itk::RegionalMinimaImageFilter< TInputImage, TOutputImage >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, TFunction1, TFunction2 >, itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >, itk::InPlaceImageFilter< TDeformationField, TDeformationField >, itk::InPlaceImageFilter< TLabelImage, TOutputImage >, itk::InPlaceImageFilter< TInputImage >, itk::InPlaceImageFilter< TInputImage, TSparseOutputImage >, itk::InPlaceImageFilter< TFeatureImageType, Superclass::ImageType >, itk::InPlaceImageFilter< TInputImage1, TOutputImage >, itk::InPlaceImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::InPlaceImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::InPlaceImageFilter< TInputImageType, TSparseOutputImageType >, itk::InPlaceImageFilter< TImage, TImage >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::greater< TInputImage::PixelType >, std::greater< TOutputImage::PixelType > >, and itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::less< TInputImage::PixelType >, std::less< TOutputImage::PixelType > >.

Definition at line 84 of file itkImageToImageFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TInputImage::IndexType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InputImageIndexType

Definition at line 260 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TInputImage::PixelType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InputImagePixelType

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 261 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TInputImage::Pointer itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InputImagePointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 259 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TInputImage::RegionType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InputImageRegionType

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 263 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TInputImage::SizeType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InputImageSizeType

Definition at line 262 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TInputImage itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InputImageType

Some convenient typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 253 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage>

typedef ImageToImageFilterDetail::ImageRegionCopier<itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension)> itk::ImageToImageFilter< TInputImage, TOutputImage >::InputToOutputRegionCopierType [protected, inherited]

Typedef for the region copier function object that converts an input region to an output region.

Definition at line 164 of file itkImageToImageFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef InternalImageType::PixelType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InternalImagePixelType

Definition at line 273 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef InternalImageType::Pointer itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InternalImagePointer

Definition at line 274 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef InternalImageType::RegionType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InternalImageRegionType

Definition at line 275 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef Image< float, itkGetStaticConstMacro(ImageDimension) > itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::InternalImageType

Internal (temporary) image related type definitions.

Definition at line 272 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef MRASlabIdentifier<InputImageType> itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::MRASlabIdentifierType

Regions of the MRI slab identifier return.

Definition at line 279 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef Statistics::NormalVariateGenerator itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::NormalVariateGeneratorType

Normal variate Generator Type

Definition at line 294 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef OnePlusOneEvolutionaryOptimizer itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::OptimizerType

Optimizer type definition.

Definition at line 297 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TOutputImage::IndexType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::OutputImageIndexType

Definition at line 255 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TOutputImage::PixelType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::OutputImagePixelType

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 256 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TOutputImage::Pointer itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::OutputImagePointer

Reimplemented from itk::ImageSource< TOutputImage >.

Definition at line 254 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TOutputImage::RegionType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::OutputImageRegionType

Superclass typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 258 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TOutputImage::SizeType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::OutputImageSizeType

Definition at line 257 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef TOutputImage itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::OutputImageType

Input and output image related type definitions.

Reimplemented from itk::ImageSource< TOutputImage >.

Definition at line 252 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage>

typedef ImageToImageFilterDetail::ImageRegionCopier<itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension)> itk::ImageToImageFilter< TInputImage, TOutputImage >::OutputToInputRegionCopierType [protected, inherited]

Typedef for the region copier function object that converts an output region to an input region.

Definition at line 169 of file itkImageToImageFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef SmartPointer<Self> itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::Pointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 238 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef Array2D<unsigned int> itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::ScheduleType

ScheduleType typedef support.

Definition at line 300 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef MRIBiasFieldCorrectionFilter itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::Self

Standard class typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 236 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef SlabRegionVectorType::iterator itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::SlabRegionVectorIteratorType

Definition at line 282 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef MRASlabIdentifierType::SlabRegionVectorType itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::SlabRegionVectorType

Definition at line 281 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TInputImage, class TOutputImage, class TMaskImage>

typedef ImageToImageFilter< TInputImage, TOutputImage >