#include <itkImagePCAShapeModelEstimator.h>
Inheritance diagram for itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >:
itkImagePCAShapeModelEstimator performs a principal component analysis (PCA) on a set of images. The user specifies the number of training images and also the number of desired largest principal components needed. The ITK pipeline mechanism sets up the storage for both input and output images. The number of output images are the user specified number of desired largest principal components plus 1 (for the mean image).
The algorithm uses the VNL library to perform the eigen analysis. To speed the computation of the instead of performing the eigen analysis of the covariance vector A*A' where A is a matrix with p x t, p = number of pixels or voxels in each images and t = number of training images, we calculate the eigen vectors of the inner product matrix A'*A. The resulting eigen vectors (E) are then multiplied with the the matrix A to get the principal compoenets. The covariance matrix has a dimension of p x p. Since number of pixels in any image being typically very high the eigen decomposition becomes computationally expensive. The inner product on the other hand has the dimension of t x t, where t is typically much smaller that p. Hence the eigen decomposition (most compute intensive part) is an orders of magnitude faster.
The Update() function enables the calculation of the various models, creates the membership function objects and populates them.
Definition at line 72 of file itkImagePCAShapeModelEstimator.h.
Public Types | |
| typedef SmartPointer< const Self > | ConstPointer |
| typedef DataObject::Pointer | DataObjectPointer |
| typedef std::vector< DataObjectPointer > | DataObjectPointerArray |
| typedef DataObjectPointerArray::size_type | DataObjectPointerArraySizeType |
| typedef ImageRegionConstIterator< TInputImage > | InputImageConstIterator |
| typedef TInputImage::ConstPointer | InputImageConstPointer |
| typedef ImageRegionIterator< TInputImage > | InputImageIterator |
| typedef TInputImage::PixelType | InputImagePixelType |
| typedef TInputImage::Pointer | InputImagePointer |
| typedef InputImageType::RegionType | InputImageRegionType |
| typedef TInputImage | InputImageType |
| typedef vnl_matrix< double > | MatrixOfDoubleType |
| typedef vnl_matrix< int > | MatrixOfIntegerType |
| typedef ImageRegionIterator< TOutputImage > | OutputImageIterator |
| typedef Superclass::OutputImagePixelType | OutputImagePixelType |
| typedef TOutputImage::Pointer | OutputImagePointer |
| typedef Superclass::OutputImageRegionType | OutputImageRegionType |
| typedef TOutputImage | OutputImageType |
| typedef SmartPointer< Self > | Pointer |
| typedef ImagePCAShapeModelEstimator | Self |
| typedef ImageShapeModelEstimatorBase< TInputImage, TOutputImage > | Superclass |
| typedef vnl_vector< double > | VectorOfDoubleType |
Public Member Functions | |
| virtual void | AbortGenerateDataOff () |
| virtual void | AbortGenerateDataOn () |
| virtual LightObject::Pointer | CreateAnother () const |
| virtual void | DebugOff () const |
| virtual void | DebugOn () const |
| virtual void | Delete () |
| virtual const bool & | GetAbortGenerateData () |
| Command * | GetCommand (unsigned long tag) |
| bool | GetDebug () const |
| virtual VectorOfDoubleType | GetEigenValues () |
| DataObjectPointerArray & | GetInputs () |
| const MetaDataDictionary & | GetMetaDataDictionary (void) const |
| MetaDataDictionary & | GetMetaDataDictionary (void) |
| virtual unsigned long | GetMTime () const |
| MultiThreader * | GetMultiThreader () |
| virtual const char * | GetNameOfClass () const |
| DataObjectPointerArraySizeType | GetNumberOfInputs () const |
| virtual DataObjectPointerArraySizeType | GetNumberOfValidRequiredInputs () const |
| virtual const float & | GetProgress () |
| virtual int | GetReferenceCount () const |
| virtual void | GraftNthOutput (unsigned int idx, DataObject *output) |
| virtual void | GraftOutput (DataObject *output) |
| bool | HasObserver (const EventObject &event) const |
| void | InvokeEvent (const EventObject &) const |
| void | InvokeEvent (const EventObject &) |
| itkStaticConstMacro (InputImageDimension, unsigned int, TInputImage::ImageDimension) | |
| virtual DataObjectPointer | MakeOutput (unsigned int idx) |
| virtual void | Modified () const |
| virtual void | PrepareOutputs () |
| void | Print (std::ostream &os, Indent indent=0) const |
| virtual void | PropagateRequestedRegion (DataObject *output) |
| virtual void | Register () const |
| void | RemoveAllObservers () |
| void | RemoveObserver (unsigned long tag) |
| virtual void | ResetPipeline () |
| virtual void | SetAbortGenerateData (bool _arg) |
| void | SetDebug (bool debugFlag) const |
| void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
| virtual void | SetProgress (float _arg) |
| virtual void | SetReferenceCount (int) |
| virtual void | UnRegister () const |
| virtual void | Update () |
| virtual void | UpdateLargestPossibleRegion () |
| virtual void | UpdateOutputData (DataObject *output) |
| virtual void | UpdateOutputInformation () |
| void | UpdateProgress (float amount) |
| unsigned long | AddObserver (const EventObject &event, Command *) const |
| unsigned long | AddObserver (const EventObject &event, Command *) |
| const InputImageType * | GetInput (unsigned int idx) |
| const InputImageType * | GetInput (void) |
| virtual void | SetInput (unsigned int, const TInputImage *image) |
| virtual void | SetInput (const InputImageType *image) |
| DataObjectPointerArraySizeType | GetNumberOfOutputs () const |
| DataObjectPointerArray & | GetOutputs () |
| virtual unsigned int | GetNumberOfPrincipalComponentsRequired () |
| virtual void | SetNumberOfPrincipalComponentsRequired (unsigned int n) |
| virtual const int & | GetNumberOfThreads () |
| virtual void | SetNumberOfThreads (int _arg) |
| virtual unsigned int | GetNumberOfTrainingImages () |
| virtual void | SetNumberOfTrainingImages (unsigned int n) |
| OutputImageType * | GetOutput (unsigned int idx) |
| OutputImageType * | GetOutput (void) |
| virtual const bool & | GetReleaseDataBeforeUpdateFlag () |
| virtual void | ReleaseDataBeforeUpdateFlagOff () |
| virtual void | ReleaseDataBeforeUpdateFlagOn () |
| virtual void | SetReleaseDataBeforeUpdateFlag (bool _arg) |
| virtual bool | GetReleaseDataFlag () const |
| void | ReleaseDataFlagOff () |
| void | ReleaseDataFlagOn () |
| virtual void | SetReleaseDataFlag (bool flag) |
| itkStaticConstMacro (OutputImageDimension, unsigned int, TOutputImage::ImageDimension) | |
| virtual void | PopBackInput () |
| virtual void | PopFrontInput () |
| virtual void | PushBackInput (const InputImageType *image) |
| virtual void | PushFrontInput (const InputImageType *image) |
Static Public Member Functions | |
| static void | BreakOnError () |
| static Pointer | New () |
| static bool | GetGlobalWarningDisplay () |
| static void | GlobalWarningDisplayOff () |
| static void | GlobalWarningDisplayOn () |
| static void | SetGlobalWarningDisplay (bool flag) |
Protected Types | |
| typedef ImageToImageFilterDetail::ImageRegionCopier< itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension)> | InputToOutputRegionCopierType |
| typedef ImageToImageFilterDetail::ImageRegionCopier< itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension)> | OutputToInputRegionCopierType |
Protected Member Functions | |
| virtual void | AfterThreadedGenerateData () |
| virtual void | AllocateOutputs () |
| virtual void | BeforeThreadedGenerateData () |
| virtual void | CacheInputReleaseDataFlags () |
| virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
| virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
| virtual void | EnlargeOutputRequestedRegion (DataObject *) |
| void | GenerateData () |
| virtual void | GenerateInputRequestedRegion () |
| virtual void | GenerateOutputInformation () |
| virtual void | GenerateOutputRequestedRegion (DataObject *output) |
| ImagePCAShapeModelEstimator () | |
| bool | PrintObservers (std::ostream &os, Indent indent) const |
| virtual void | PrintSelf (std::ostream &os, Indent indent) const |
| virtual void | PropagateResetPipeline () |
| virtual void | ReleaseInputs () |
| virtual void | RestoreInputReleaseDataFlags () |
| void | SetNumberOfInputs (unsigned int num) |
| void | SetNumberOfOutputs (unsigned int num) |
| virtual int | SplitRequestedRegion (int i, int num, OutputImageRegionType &splitRegion) |
| virtual void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, int threadId) ITK_NO_RETURN |
| ~ImagePCAShapeModelEstimator () | |
| virtual void | AddInput (DataObject *input) |
| virtual const unsigned int & | GetNumberOfRequiredInputs () |
| virtual void | RemoveInput (DataObject *input) |
| virtual void | SetNthInput (unsigned int num, DataObject *input) |
| virtual void | SetNumberOfRequiredInputs (unsigned int _arg) |
| virtual void | AddOutput (DataObject *output) |
| virtual const unsigned int & | GetNumberOfRequiredOutputs () |
| virtual void | RemoveOutput (DataObject *output) |
| virtual void | SetNthOutput (unsigned int num, DataObject *output) |
| virtual void | SetNumberOfRequiredOutputs (unsigned int _arg) |
| const DataObject * | GetInput (unsigned int idx) const |
| const DataObject * | GetOutput (unsigned int idx) const |
| virtual void | PrintHeader (std::ostream &os, Indent indent) const |
| virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
| void | PushBackInput (const DataObject *input) |
| void | PushFrontInput (const DataObject *input) |
Static Protected Member Functions | |
| static ITK_THREAD_RETURN_TYPE | ThreaderCallback (void *arg) |
Protected Attributes | |
| TimeStamp | m_OutputInformationMTime |
| volatile int | m_ReferenceCount |
| SimpleFastMutexLock | m_ReferenceCountLock |
| bool | m_Updating |
| typedef SmartPointer<const Self> itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::ConstPointer |
Reimplemented from itk::ImageShapeModelEstimatorBase< TInputImage, TOutputImage >.
Definition at line 80 of file itkImagePCAShapeModelEstimator.h.
typedef DataObject::Pointer itk::ImageSource< TOutputImage >::DataObjectPointer [inherited] |
Smart Pointer type to a DataObject.
Reimplemented from itk::ProcessObject.
Reimplemented in itk::LabelStatisticsImageFilter< TInputImage, TLabelImage >, itk::MinimumMaximumImageFilter< TInputImage >, itk::StatisticsImageFilter< TInputImage >, and itk::StreamingImageFilter< TInputImage, TOutputImage >.
Definition at line 62 of file itkImageSource.h.
typedef std::vector<DataObjectPointer> itk::ProcessObject::DataObjectPointerArray [inherited] |
STL Array of SmartPointers to DataObjects
Definition at line 103 of file itkProcessObject.h.
typedef DataObjectPointerArray::size_type itk::ProcessObject::DataObjectPointerArraySizeType [inherited] |
Size type of an std::vector
Definition at line 112 of file itkProcessObject.h.
| typedef ImageRegionConstIterator<TInputImage> itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::InputImageConstIterator |
Definition at line 101 of file itkImagePCAShapeModelEstimator.h.
| typedef TInputImage::ConstPointer itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::InputImageConstPointer |
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 91 of file itkImagePCAShapeModelEstimator.h.
| typedef ImageRegionIterator<TInputImage> itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::InputImageIterator |
Type definition for the input image iterator type.
Definition at line 98 of file itkImagePCAShapeModelEstimator.h.
| typedef TInputImage::PixelType itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::InputImagePixelType |
Type definition for the input image pixel type.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 94 of file itkImagePCAShapeModelEstimator.h.
| typedef TInputImage::Pointer itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::InputImagePointer |
Reimplemented from itk::ImageShapeModelEstimatorBase< TInputImage, TOutputImage >.
Definition at line 90 of file itkImagePCAShapeModelEstimator.h.
typedef InputImageType::RegionType itk::ImageToImageFilter< TInputImage, TOutputImage >::InputImageRegionType [inherited] |
Reimplemented in itk::IsolatedWatershedImageFilter< TInputImage, TOutputImage >, itk::MRFImageFilter< TInputImage, TClassifiedImage >, itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >, itk::OtsuMultipleThresholdsImageFilter< TInputImage, TOutputImage >, itk::OtsuThresholdImageFilter< TInputImage, TOutputImage >, itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >, itk::AccumulateImageFilter< TInputImage, TOutputImage >, itk::BinaryDilateImageFilter< TInputImage, TOutputImage, TKernel >, itk::BinaryErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::BinaryMedianImageFilter< TInputImage, TOutputImage >, itk::BinaryMorphologyImageFilter< TInputImage, TOutputImage, TKernel >, itk::BlackTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::BloxBoundaryProfileImageToBloxCoreAtomImageFilter< TInputImage, TOutputImage, TSourceImage >, itk::ChangeInformationImageFilter< TInputImage >, itk::ClosingByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::ConfidenceConnectedImageFilter< TInputImage, TOutputImage >, itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >, itk::ConstantPadImageFilter< TInputImage, TOutputImage >, itk::CropImageFilter< TInputImage, TOutputImage >, itk::ExtractImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedClosingImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedOpeningImageFilter< TInputImage, TOutputImage >, itk::GrayscaleFillholeImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGrindPeakImageFilter< TInputImage, TOutputImage >, itk::HConcaveImageFilter< TInputImage, TOutputImage >, itk::HConvexImageFilter< TInputImage, TOutputImage >, itk::HMaximaImageFilter< TInputImage, TOutputImage >, itk::HMinimaImageFilter< TInputImage, TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::IsolatedConnectedImageFilter< TInputImage, TOutputImage >, itk::IterativeInverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::JoinSeriesImageFilter< TInputImage, TOutputImage >, itk::MeanImageFilter< TInputImage, TOutputImage >, itk::MedianImageFilter< TInputImage, TOutputImage >, itk::MirrorPadImageFilter< TInputImage, TOutputImage >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, TFunction >, itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >, itk::NoiseImageFilter< TInputImage, TOutputImage >, itk::OpeningByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::OrientImageFilter< TInputImage, TOutputImage >, itk::PadImageFilter< TInputImage, TOutputImage >, itk::PasteImageFilter< TInputImage, TSourceImage, TOutputImage >, itk::PolylineMask2DImageFilter< TInputImage, TPolyline, TOutputImage >, itk::PolylineMaskImageFilter< TInputImage, TPolyline, TVector, TOutputImage >, itk::ProjectionImageFilter< TInputImage, TOutputImage, TAccumulator >, itk::ReflectImageFilter< TInputImage, TOutputImage >, itk::RegionOfInterestImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ShiftScaleImageFilter< TInputImage, TOutputImage >, itk::ShiftScaleInPlaceImageFilter< TInputImage >, itk::SimpleContourExtractorImageFilter< TInputImage, TOutputImage >, itk::StreamingImageFilter< TInputImage, TOutputImage >, itk::ThresholdImageFilter< TImage >, itk::TileImageFilter< TInputImage, TOutputImage >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, TFunction >, itk::VectorConfidenceConnectedImageFilter< TInputImage, TOutputImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VotingBinaryHoleFillingImageFilter< TInputImage, TOutputImage >, itk::VotingBinaryImageFilter< TInputImage, TOutputImage >, itk::VotingBinaryIterativeHoleFillingImageFilter< TImage >, itk::WhiteTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::WrapPadImageFilter< TInputImage, TOutputImage >, itk::ImageAndPathToImageFilter< TInputImage, TInputPath, TOutputImage >, itk::InPlaceImageFilter< TInputImage, TOutputImage >, itk::MorphologicalWatershedFromMarkersImageFilter< TInputImage, TLabelImage >, itk::MorphologicalWatershedImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::RegionalMaximaImageFilter< TInputImage, TOutputImage >, itk::RegionalMinimaImageFilter< TInputImage, TOutputImage >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, TFunction1, TFunction2 >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Add1< TInputImage::PixelType, TInputImage::PixelType > >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Maximum1< TInputImage::PixelType, TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MedianAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MaximumAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::BinaryThresholdAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MinimumAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MeanAccumulator< TInputImage::PixelType, TAccumulate > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::StandardDeviationAccumulator< TInputImage::PixelType, TAccumulate > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::SumAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::BinaryAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sqrt< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::SymmetricEigenAnalysisFunction< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Square< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sigmoid< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sin< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::BinaryThreshold< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Cos< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::IntensityLinearTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ThresholdLabeler< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::MatrixIndexSelection< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ModulusTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::GradientMagnitude< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ChangeLabel< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::BoundedReciprocal< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ExpNegative< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::RGBToLuminance< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Acos< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Log10< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToImaginary< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::IntensityWindowingTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorCast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToPhase< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::EdgePotential< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::AccessorFunctor< TInputImage::PixelType, TAccessor > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Atan< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorIndexSelectionCast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToReal< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Tan< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Abs< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Log< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Asin< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::TensorFractionalAnisotropyFunction< TInputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToModulus< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TFeatureImageType, Superclass::ImageType, itk::Functor::Cast< TFeatureImageType::PixelType, Superclass::ImageType::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Exp< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::NOT< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TLabelImage, TOutputImage, itk::Functor::LabelToRGBFunctor< TLabelImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorMagnitudeLinearTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::TensorRelativeAnisotropyFunction< TInputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Cast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::InvertIntensityTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ImageAndPathToImageFilter< TImage, itk::ParametricPath< 2 >, TImage >, itk::InPlaceImageFilter< TDeformationField, TDeformationField >, itk::InPlaceImageFilter< TLabelImage, TOutputImage >, itk::InPlaceImageFilter< TInputImage >, itk::InPlaceImageFilter< TInputImage, TSparseOutputImage >, itk::InPlaceImageFilter< TFeatureImageType, Superclass::ImageType >, itk::InPlaceImageFilter< TInputImage1, TOutputImage >, itk::InPlaceImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::InPlaceImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::InPlaceImageFilter< TInputImageType, TSparseOutputImageType >, itk::InPlaceImageFilter< TImage, TImage >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::greater< TInputImage::PixelType >, std::greater< TOutputImage::PixelType > >, and itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::less< TInputImage::PixelType >, std::less< TOutputImage::PixelType > >.
Definition at line 85 of file itkImageToImageFilter.h.
| typedef TInputImage itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::InputImageType |
Type definition for the input image.
Reimplemented from itk::ImageShapeModelEstimatorBase< TInputImage, TOutputImage >.
Definition at line 86 of file itkImagePCAShapeModelEstimator.h.
typedef ImageToImageFilterDetail::ImageRegionCopier<itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension)> itk::ImageToImageFilter< TInputImage, TOutputImage >::InputToOutputRegionCopierType [protected, inherited] |
Typedef for the region copier function object that converts an input region to an output region.
Definition at line 164 of file itkImageToImageFilter.h.
| typedef vnl_matrix<double> itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::MatrixOfDoubleType |
Type definition for a double matrix.
Definition at line 116 of file itkImagePCAShapeModelEstimator.h.
| typedef vnl_matrix<int> itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::MatrixOfIntegerType |
Type definition for an integer vector.
Definition at line 119 of file itkImagePCAShapeModelEstimator.h.
| typedef ImageRegionIterator<TOutputImage> itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >::OutputImageIterator |
Type definition for the input image iterator type.
Definition at line 113 of file itkImagePCAShapeModelEstimator.h.
typedef Superclass::OutputImagePixelType itk::ImageToImageFilter< TInputImage, TOutputImage >::OutputImagePixelType [inherited] |
Reimplemented from itk::ImageSource< TOutputImage >.
Reimplemented in itk::BinaryThinningImageFilter< TInputImage, TOutputImage >, itk::IsolatedWatershedImageFilter< TInputImage, TOutputImage >, itk::KLMRegionGrowImageFilter< TInputImage, TOutputImage >, itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >, itk::RegionGrowImageFilter< TInputImage, TOutputImage >, itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >, itk::AccumulateImageFilter< TInputImage, TOutputImage >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, TFunction >, itk::BlackTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::BloxBoundaryPointImageToBloxBoundaryProfileImageFilter< TSourceImage >, itk::BloxBoundaryProfileImageToBloxCoreAtomImageFilter< TInputImage, TOutputImage, TSourceImage >, itk::BSplineCenteredResampleImageFilterBase< TInputImage, TOutputImage >, itk::BSplineResampleImageFilterBase< TInputImage, TOutputImage >, itk::CannyEdgeDetectionImageFilter< TInputImage, TOutputImage >, itk::ChangeInformationImageFilter< TInputImage >, itk::ClosingByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::ConfidenceConnectedImageFilter< TInputImage, TOutputImage >, itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >, itk::ConstantPadImageFilter< TInputImage, TOutputImage >, itk::CropImageFilter< TInputImage, TOutputImage >, itk::ExtractImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedClosingImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedOpeningImageFilter< TInputImage, TOutputImage >, itk::GrayscaleFillholeImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGeodesicDilateImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGrindPeakImageFilter< TInputImage, TOutputImage >, itk::HConcaveImageFilter< TInputImage, TOutputImage >, itk::HConvexImageFilter< TInputImage, TOutputImage >, itk::HMaximaImageFilter< TInputImage, TOutputImage >, itk::HMinimaImageFilter< TInputImage, TOutputImage >, itk::IsolatedConnectedImageFilter< TInputImage, TOutputImage >, itk::IterativeInverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::JoinImageFilter< TInputImage1, TInputImage2 >, itk::MirrorPadImageFilter< TInputImage, TOutputImage >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, TFunction >, itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >, itk::OpeningByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::OrientImageFilter< TInputImage, TOutputImage >, itk::PadImageFilter< TInputImage, TOutputImage >, itk::PasteImageFilter< TInputImage, TSourceImage, TOutputImage >, itk::PolylineMask2DImageFilter< TInputImage, TPolyline, TOutputImage >, itk::PolylineMaskImageFilter< TInputImage, TPolyline, TVector, TOutputImage >, itk::ProjectionImageFilter< TInputImage, TOutputImage, TAccumulator >, itk::ReconstructionByDilationImageFilter< TInputImage, TOutputImage >, itk::ReconstructionByErosionImageFilter< TInputImage, TOutputImage >, itk::ReconstructionImageFilter< TInputImage, TOutputImage, TCompare >, itk::ReflectImageFilter< TInputImage, TOutputImage >, itk::RegionOfInterestImageFilter< TInputImage, TOutputImage >, itk::ScalarToArrayCastImageFilter< TInputImage, TOutputImage >, itk::ShiftScaleImageFilter< TInputImage, TOutputImage >, itk::ShiftScaleInPlaceImageFilter< TInputImage >, itk::StreamingImageFilter< TInputImage, TOutputImage >, itk::TernaryFunctorImageFilter< TInputImage1, TInputImage2, TInputImage3, TOutputImage, TFunction >, itk::ThresholdImageFilter< TImage >, itk::TobogganImageFilter< TInputImage >, itk::TwoOutputExampleImageFilter< TImage >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, TFunction >, itk::VectorConfidenceConnectedImageFilter< TInputImage, TOutputImage >, itk::WhiteTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::WrapPadImageFilter< TInputImage, TOutputImage >, itk::ZeroCrossingBasedEdgeDetectionImageFilter< TInputImage, TOutputImage >, itk::ZeroCrossingImageFilter< TInputImage, TOutputImage >, itk::ImageAndPathToImageFilter< TInputImage, TInputPath, TOutputImage >, itk::InPlaceImageFilter< TInputImage, TOutputImage >, itk::MorphologicalWatershedImageFilter< TInputImage, TOutputImage >, itk::RegionalMaximaImageFilter< TInputImage, TOutputImage >, itk::RegionalMinimaImageFilter< TInputImage, TOutputImage >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, TFunction1, TFunction2 >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Function::Sub2< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::Atan2< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::AND< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Function::Maximum< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::ConstrainedValueDifference< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage, TLabelImage, TOutputImage, itk::Functor::LabelOverlayFunctor< TInputImage::PixelType, TLabelImage::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::SquaredDifference2< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage, TInputImage, TOutputImage, itk::Function::Compose2DCovariantVector< TInputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::Add2< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage, TInputImage, TOutputImage, itk::Function::Compose2DVector< TInputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage, TMaskImage, TOutputImage, itk::Functor::MaskInput< TInputImage::PixelType, TMaskImage::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::AbsoluteValueDifference2< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::XOR< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Function::Minimum< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage, TMaskImage, TOutputImage, itk::Functor::MaskNegatedInput< TInputImage::PixelType, TMaskImage::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::Modulus2< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::OR< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::ConstrainedValueAddition< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Functor::WeightedAdd2< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Function::Div< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::itk::Functor::JoinFunctorFunctorType >, itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, itk::Function::Mult< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >, itk::CannyEdgeDetectionImageFilter< Superclass::ImageType, Superclass::ImageType >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Add1< TInputImage::PixelType, TInputImage::PixelType > >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Maximum1< TInputImage::PixelType, TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MedianAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MaximumAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::BinaryThresholdAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MinimumAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MeanAccumulator< TInputImage::PixelType, TAccumulate > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::StandardDeviationAccumulator< TInputImage::PixelType, TAccumulate > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::SumAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::BinaryAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ReconstructionImageFilter< TInputImage, TOutputImage, std::greater< TOutputImage::PixelType > >, itk::ReconstructionImageFilter< TInputImage, TOutputImage, std::less< TOutputImage::PixelType > >, itk::TernaryFunctorImageFilter< TInputImage, TInputImage, TInputImage, TOutputImage, itk::Function::Compose3DVector< TInputImage::PixelType > >, itk::TernaryFunctorImageFilter< TInputImage1, TInputImage2, TInputImage3, TOutputImage, itk::Function::Modulus3< TInputImage1::PixelType, TInputImage2::PixelType, TInputImage3::PixelType, TOutputImage::PixelType > >, itk::TernaryFunctorImageFilter< TInputImage1, TInputImage2, TInputImage3, TOutputImage, itk::Function::ModulusSquare3< TInputImage1::PixelType, TInputImage2::PixelType, TInputImage3::PixelType, TOutputImage::PixelType > >, itk::TernaryFunctorImageFilter< TInputImage1, TInputImage2, TInputImage3, TOutputImage, itk::Function::Add3< TInputImage1::PixelType, TInputImage2::PixelType, TInputImage3::PixelType, TOutputImage::PixelType > >, itk::TernaryFunctorImageFilter< TInputImage, TInputImage, TInputImage, TOutputImage, itk::Function::Compose3DCovariantVector< TInputImage::PixelType > >, itk::TernaryFunctorImageFilter< TInputImage, TInputImage, TInputImage, TOutputImage, itk::Function::ComposeRGB< TInputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sqrt< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::SymmetricEigenAnalysisFunction< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Square< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sigmoid< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sin< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::BinaryThreshold< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Cos< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::IntensityLinearTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ThresholdLabeler< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::MatrixIndexSelection< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ModulusTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::GradientMagnitude< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ChangeLabel< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::BoundedReciprocal< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ExpNegative< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::RGBToLuminance< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Acos< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Log10< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToImaginary< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::IntensityWindowingTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorCast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToPhase< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::EdgePotential< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::AccessorFunctor< TInputImage::PixelType, TAccessor > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Atan< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorIndexSelectionCast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToReal< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Tan< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Abs< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Log< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Asin< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::TensorFractionalAnisotropyFunction< TInputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToModulus< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TFeatureImageType, Superclass::ImageType, itk::Functor::Cast< TFeatureImageType::PixelType, Superclass::ImageType::PixelType > >,