itk::VelocityFieldTransform< TParametersValueType, NDimensions > Class Template Reference

#include <itkVelocityFieldTransform.h>

Inheritance diagram for itk::VelocityFieldTransform< TParametersValueType, NDimensions >:

Collaboration diagram for itk::VelocityFieldTransform< TParametersValueType, NDimensions >:

Detailed Description

template<typename TParametersValueType, unsigned int NDimensions>
class itk::VelocityFieldTransform< TParametersValueType, NDimensions >

Provides local/dense/high-dimensionality transformation via a a velocity field.

Author

Nick Tustison

Brian Avants

Definition at line 36 of file itkVelocityFieldTransform.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DerivativeType	DerivativeType
typedef VelocityFieldType::DirectionType	DirectionType
typedef DisplacementFieldType::Pointer	DisplacementFieldPointer
typedef Superclass::DisplacementFieldType	DisplacementFieldType
typedef Superclass::FixedParametersType	FixedParametersType
typedef Superclass::FixedParametersValueType	FixedParametersValueType
typedef VelocityFieldType::IndexType	IndexType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InputVectorPixelType	InputVectorPixelType
typedef Superclass::InputVectorType	InputVectorType
typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer
typedef Superclass::NumberOfParametersType	NumberOfParametersType
typedef ImageVectorOptimizerParametersHelper< ScalarType, Dimension, VelocityFieldDimension >	OptimizerParametersHelperType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::OutputVectorPixelType	OutputVectorPixelType
typedef Superclass::OutputVectorType	OutputVectorType
typedef Superclass::ParametersType	ParametersType
typedef Superclass::ParametersValueType	ParametersValueType
typedef VelocityFieldType::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef VelocityFieldType::PointType	PointType
typedef VelocityFieldType::RegionType	RegionType
typedef Superclass::ScalarType	ScalarType
typedef VelocityFieldTransform	Self
typedef VelocityFieldType::SizeType	SizeType
typedef VelocityFieldType::SpacingType	SpacingType
typedef DisplacementFieldTransform< TParametersValueType, NDimensions >	Superclass
typedef Superclass::TransformCategoryType	TransformCategoryType
typedef VelocityFieldInterpolatorType::Pointer	VelocityFieldInterpolatorPointer
typedef VectorInterpolateImageFunction< VelocityFieldType, ScalarType >	VelocityFieldInterpolatorType
typedef VelocityFieldType::Pointer	VelocityFieldPointer
typedef Image< OutputVectorType, VelocityFieldDimension >	VelocityFieldType
Public Types inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DerivativeType	DerivativeType
typedef DisplacementFieldType::DirectionType	DirectionType
typedef DisplacementFieldType::ConstPointer	DisplacementFieldConstPointer
typedef DisplacementFieldType::Pointer	DisplacementFieldPointer
typedef Image< OutputVectorType, Dimension >	DisplacementFieldType
typedef Superclass::FixedParametersType	FixedParametersType
typedef Superclass::FixedParametersValueType	FixedParametersValueType
typedef DisplacementFieldType::IndexType	IndexType
typedef Superclass::InputCovariantVectorType	InputCovariantVectorType
typedef Superclass::InputDiffusionTensor3DType	InputDiffusionTensor3DType
typedef Superclass::InputPointType	InputPointType
typedef CovariantVector< ScalarType, InputDiffusionTensor3DType::Dimension >	InputTensorEigenVectorType
typedef Superclass::InputVectorPixelType	InputVectorPixelType
typedef Superclass::InputVectorType	InputVectorType
typedef Superclass::InputVnlVectorType	InputVnlVectorType
typedef VectorInterpolateImageFunction< DisplacementFieldType, ScalarType >	InterpolatorType
typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer
typedef Superclass::JacobianType	JacobianType
typedef Superclass::NumberOfParametersType	NumberOfParametersType
typedef ImageVectorOptimizerParametersHelper< ScalarType, OutputVectorType::Dimension, Dimension >	OptimizerParametersHelperType
typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType
typedef Superclass::OutputDiffusionTensor3DType	OutputDiffusionTensor3DType
typedef Superclass::OutputPointType	OutputPointType
typedef CovariantVector< ScalarType, OutputDiffusionTensor3DType::Dimension >	OutputTensorEigenVectorType
typedef Superclass::OutputVectorPixelType	OutputVectorPixelType
typedef Superclass::OutputVectorType	OutputVectorType
typedef Superclass::OutputVnlVectorType	OutputVnlVectorType
typedef Superclass::ParametersType	ParametersType
typedef Superclass::ParametersValueType	ParametersValueType
typedef DisplacementFieldType::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef DisplacementFieldType::PointType	PointType
typedef DisplacementFieldType::RegionType	RegionType
typedef Superclass::ScalarType	ScalarType
typedef DisplacementFieldTransform	Self
typedef DisplacementFieldType::SizeType	SizeType
typedef DisplacementFieldType::SpacingType	SpacingType
typedef Transform< TParametersValueType, NDimensions, NDimensions >	Superclass
typedef Superclass::TransformCategoryType	TransformCategoryType
Public Types inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
typedef SmartPointer< const Self >	ConstPointer
typedef Array< ParametersValueType >	DerivativeType
typedef Matrix< double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)>	DirectionChangeMatrix
typedef Superclass::FixedParametersType	FixedParametersType
typedef Superclass::FixedParametersValueType	FixedParametersValueType
typedef CovariantVector< TParametersValueType, NInputDimensions >	InputCovariantVectorType
typedef DiffusionTensor3D< TParametersValueType >	InputDiffusionTensor3DType
typedef Matrix< double, itkGetStaticConstMacro(InputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)>	InputDirectionMatrix
typedef Point< TParametersValueType, NInputDimensions >	InputPointType
typedef SymmetricSecondRankTensor< TParametersValueType, NInputDimensions >	InputSymmetricSecondRankTensorType
typedef VariableLengthVector< TParametersValueType >	InputVectorPixelType
typedef Vector< TParametersValueType, NInputDimensions >	InputVectorType
typedef vnl_vector_fixed< TParametersValueType, NInputDimensions >	InputVnlVectorType
typedef InverseTransformBaseType::Pointer	InverseTransformBasePointer
typedef Transform< TParametersValueType, NOutputDimensions, NInputDimensions >	InverseTransformBaseType
typedef Array2D< ParametersValueType >	JacobianType
typedef Matrix< TParametersValueType, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)>	MatrixType
typedef Superclass::NumberOfParametersType	NumberOfParametersType
typedef CovariantVector< TParametersValueType, NOutputDimensions >	OutputCovariantVectorType
typedef DiffusionTensor3D< TParametersValueType >	OutputDiffusionTensor3DType
typedef Matrix< double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(OutputSpaceDimension)>	OutputDirectionMatrix
typedef Point< TParametersValueType, NOutputDimensions >	OutputPointType
typedef SymmetricSecondRankTensor< TParametersValueType, NOutputDimensions >	OutputSymmetricSecondRankTensorType
typedef VariableLengthVector< TParametersValueType >	OutputVectorPixelType
typedef Vector< TParametersValueType, NOutputDimensions >	OutputVectorType
typedef vnl_vector_fixed< TParametersValueType, NOutputDimensions >	OutputVnlVectorType
typedef Superclass::ParametersType	ParametersType
typedef Superclass::ParametersValueType	ParametersValueType
typedef SmartPointer< Self >	Pointer
typedef ParametersValueType	ScalarType
typedef Transform	Self
typedef TransformBaseTemplate< TParametersValueType >	Superclass
typedef Superclass::TransformCategoryType	TransformCategoryType
Public Types inherited from itk::TransformBaseTemplate< TParametersValueType >
typedef SmartPointer< const Self >	ConstPointer
typedef OptimizerParameters< FixedParametersValueType >	FixedParametersType
typedef double	FixedParametersValueType
typedef IdentifierType	NumberOfParametersType
typedef OptimizerParameters< ParametersValueType >	ParametersType
typedef TParametersValueType	ParametersValueType
typedef SmartPointer< Self >	Pointer
typedef TransformBaseTemplate	Self
typedef Object	Superclass
enum	TransformCategoryType {   UnknownTransformCategory =0,   Linear =1,   BSpline =2,   Spline =3,   DisplacementField =4,   VelocityField =5 }
Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef Object	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const
bool	GetInverse (Self *inverse) const
virtual InverseTransformBasePointer	GetInverseTransform () const override
virtual ScalarType	GetLowerTimeBound () const
virtual const char *	GetNameOfClass () const
virtual unsigned int	GetNumberOfIntegrationSteps () const
virtual ScalarType	GetUpperTimeBound () const
virtual const unsigned long &	GetVelocityFieldSetTime () const
virtual void	IntegrateVelocityField ()
virtual void	SetFixedParameters (const FixedParametersType &) override
virtual void	SetLowerTimeBound (ScalarType _arg)
virtual void	SetNumberOfIntegrationSteps (unsigned int _arg)
virtual void	SetUpperTimeBound (ScalarType _arg)
virtual void	UpdateTransformParameters (const DerivativeType &update, ScalarType factor=1.0) override
virtual void	SetVelocityField (VelocityFieldType *)
virtual VelocityFieldType *	GetModifiableVelocityField ()
virtual const VelocityFieldType *	GetVelocityField () const
virtual void	SetVelocityFieldInterpolator (VelocityFieldInterpolatorType *)
virtual VelocityFieldInterpolatorType *	GetModifiableVelocityFieldInterpolator ()
virtual const VelocityFieldInterpolatorType *	GetVelocityFieldInterpolator () const
virtual void	SetDisplacementField (DisplacementFieldType *displacementField) override
Public Member Functions inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
virtual void	ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &j) const override
virtual void	ComputeJacobianWithRespectToParameters (const IndexType &, JacobianType &j) const
virtual void	ComputeJacobianWithRespectToPosition (const InputPointType &x, JacobianType &j) const override
virtual void	ComputeJacobianWithRespectToPosition (const IndexType &x, JacobianType &j) const
virtual const ModifiedTimeType &	GetDisplacementFieldSetTime () const
bool	GetInverse (Self *inverse) const
virtual void	GetInverseJacobianOfForwardFieldWithRespectToPosition (const InputPointType &point, JacobianType &jacobian, bool useSVD=false) const
virtual void	GetInverseJacobianOfForwardFieldWithRespectToPosition (const IndexType &index, JacobianType &jacobian, bool useSVD=false) const
virtual NumberOfParametersType	GetNumberOfLocalParameters (void) const override
virtual TransformCategoryType	GetTransformCategory () const override
virtual void	SetIdentity ()
virtual OutputVectorPixelType	TransformCovariantVector (const InputVectorPixelType &) const override
OutputVectorPixelType	TransformDiffusionTensor (const InputVectorPixelType &) const
virtual OutputPointType	TransformPoint (const InputPointType &thisPoint) const override
virtual OutputVectorPixelType	TransformVector (const InputVectorPixelType &) const override
virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override
virtual DisplacementFieldType *	GetModifiableDisplacementField ()
virtual const DisplacementFieldType *	GetDisplacementField () const
virtual void	SetInverseDisplacementField (DisplacementFieldType *inverseDisplacementField)
virtual DisplacementFieldType *	GetModifiableInverseDisplacementField ()
virtual const DisplacementFieldType *	GetInverseDisplacementField () const
virtual void	SetInterpolator (InterpolatorType *interpolator)
virtual InterpolatorType *	GetModifiableInterpolator ()
virtual const InterpolatorType *	GetInterpolator () const
virtual void	SetInverseInterpolator (InterpolatorType *interpolator)
virtual InterpolatorType *	GetModifiableInverseInterpolator ()
virtual const InterpolatorType *	GetInverseInterpolator () const
virtual OutputVectorType	TransformVector (const InputVectorType &) const override
OutputDiffusionTensor3DType	TransformDiffusionTensor (const InputDiffusionTensor3DType &) const
virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override
virtual void	SetParameters (const ParametersType &params) override
virtual void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &j) const override
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
virtual void	ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &jacobian) const
virtual void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const =0
virtual void	ComputeJacobianWithRespectToParametersCachedTemporaries (const InputPointType &p, JacobianType &jacobian, JacobianType &) const
virtual void	ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const
virtual void	CopyInFixedParameters (const FixedParametersValueType *const begin, const FixedParametersValueType *const end) override
virtual void	CopyInParameters (const ParametersValueType *const begin, const ParametersValueType *const end) override
virtual const FixedParametersType &	GetFixedParameters (void) const override
unsigned int	GetInputSpaceDimension (void) const override
bool	GetInverse (Self *) const
virtual NumberOfParametersType	GetNumberOfFixedParameters () const
virtual NumberOfParametersType	GetNumberOfParameters (void) const override
unsigned int	GetOutputSpaceDimension (void) const override
virtual const ParametersType &	GetParameters (void) const override
virtual std::string	GetTransformTypeAsString () const override
virtual bool	IsLinear () const
	itkCloneMacro (Self)
virtual void	SetParametersByValue (const ParametersType &p) override
virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const
virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &vector, const InputPointType &point) const
virtual OutputVectorPixelType	TransformCovariantVector (const InputVectorPixelType &) const
virtual OutputVectorPixelType	TransformCovariantVector (const InputVectorPixelType &vector, const InputPointType &point) const
virtual OutputDiffusionTensor3DType	TransformDiffusionTensor3D (const InputDiffusionTensor3DType &) const
virtual OutputDiffusionTensor3DType	TransformDiffusionTensor3D (const InputDiffusionTensor3DType &tensor, const InputPointType &point) const
virtual OutputVectorPixelType	TransformDiffusionTensor3D (const InputVectorPixelType &) const
virtual OutputVectorPixelType	TransformDiffusionTensor3D (const InputVectorPixelType &tensor, const InputPointType &point) const
virtual OutputPointType	TransformPoint (const InputPointType &) const =0
virtual OutputSymmetricSecondRankTensorType	TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor, const InputPointType &point) const
virtual OutputSymmetricSecondRankTensorType	TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &) const
virtual OutputVectorPixelType	TransformSymmetricSecondRankTensor (const InputVectorPixelType &) const
virtual OutputVectorPixelType	TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor, const InputPointType &point) const
virtual OutputVectorType	TransformVector (const InputVectorType &) const
virtual OutputVectorType	TransformVector (const InputVectorType &vector, const InputPointType &point) const
virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const
virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &vector, const InputPointType &point) const
virtual OutputVectorPixelType	TransformVector (const InputVectorPixelType &) const
virtual OutputVectorPixelType	TransformVector (const InputVectorPixelType &vector, const InputPointType &point) const
virtual void	UpdateTransformParameters (const DerivativeType &update, ParametersValueType factor=1.0)
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int) override
virtual void	UnRegister () const noexcept override
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
static Pointer	New ()
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Static Public Attributes
static const unsigned int	Dimension = NDimensions
static const unsigned int	VelocityFieldDimension = NDimensions + 1
Static Public Attributes inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
static const unsigned int	Dimension = NDimensions
Static Public Attributes inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
static const unsigned int	InputSpaceDimension
static const unsigned int	OutputSpaceDimension

Protected Member Functions
DisplacementFieldType::Pointer	CopyDisplacementField (const DisplacementFieldType *) const
virtual LightObject::Pointer	InternalClone () const override
void	PrintSelf (std::ostream &os, Indent indent) const override
	VelocityFieldTransform ()
virtual	~VelocityFieldTransform ()
Protected Member Functions inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
	DisplacementFieldTransform ()
virtual	~DisplacementFieldTransform ()
Protected Member Functions inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
OutputDiffusionTensor3DType	PreservationOfPrincipalDirectionDiffusionTensor3DReorientation (const InputDiffusionTensor3DType, const JacobianType) const
	Transform ()
	Transform (NumberOfParametersType NumberOfParameters)
virtual	~Transform ()
Protected Member Functions inherited from itk::TransformBaseTemplate< TParametersValueType >
	TransformBaseTemplate ()
virtual	~TransformBaseTemplate ()
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Protected Attributes
ScalarType	m_LowerTimeBound
unsigned int	m_NumberOfIntegrationSteps
ScalarType	m_UpperTimeBound
VelocityFieldPointer	m_VelocityField
VelocityFieldInterpolatorType::Pointer	m_VelocityFieldInterpolator
unsigned long	m_VelocityFieldSetTime
Protected Attributes inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
DisplacementFieldType::Pointer	m_DisplacementField
ModifiedTimeType	m_DisplacementFieldSetTime
JacobianType	m_IdentityJacobian
InterpolatorType::Pointer	m_Interpolator
DisplacementFieldType::Pointer	m_InverseDisplacementField
InterpolatorType::Pointer	m_InverseInterpolator
Protected Attributes inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
DirectionChangeMatrix	m_DirectionChange
FixedParametersType	m_FixedParameters
ParametersType	m_Parameters
Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Private Member Functions
void	operator= (const Self &) ITK_DELETE_FUNCTION
virtual void	SetFixedParametersFromVelocityField () const
	VelocityFieldTransform (const Self &) ITK_DELETE_FUNCTION

Member Typedef Documentation

template<typename TParametersValueType , unsigned int NDimensions>

typedef SmartPointer<const Self> itk::VelocityFieldTransform< TParametersValueType, NDimensions >::ConstPointer

Definition at line 44 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::DerivativeType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::DerivativeType

Derivative type

Definition at line 82 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldType::DirectionType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::DirectionType

Definition at line 103 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef DisplacementFieldType::Pointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::DisplacementFieldPointer

Definition at line 92 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::DisplacementFieldType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::DisplacementFieldType

Define the displacement field type and corresponding interpolator type.

Definition at line 91 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::FixedParametersType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::FixedParametersType

Type of the input parameters.

Definition at line 59 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::FixedParametersValueType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::FixedParametersValueType

Definition at line 60 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldType::IndexType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::IndexType

Standard types for the velocity Field

Definition at line 99 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::InputPointType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::InputPointType

Standard coordinate point type for this class.

Definition at line 71 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::InputVectorPixelType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::InputVectorPixelType

Definition at line 78 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::InputVectorType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::InputVectorType

Standard vector type for this class.

Definition at line 75 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::InverseTransformBasePointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::InverseTransformBasePointer

InverseTransform type.

Definition at line 50 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::NumberOfParametersType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::NumberOfParametersType

The number of parameters defininig this transform.

Definition at line 68 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef ImageVectorOptimizerParametersHelper<ScalarType, Dimension, VelocityFieldDimension> itk::VelocityFieldTransform< TParametersValueType, NDimensions >::OptimizerParametersHelperType

Define the internal parameter helper used to access the field

Definition at line 112 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::OutputPointType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::OutputPointType

Definition at line 72 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::OutputVectorPixelType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::OutputVectorPixelType

Definition at line 79 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::OutputVectorType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::OutputVectorType

Definition at line 76 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::ParametersType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::ParametersType

Definition at line 61 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::ParametersValueType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::ParametersValueType

Definition at line 62 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldType::PixelType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::PixelType

Definition at line 105 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef SmartPointer<Self> itk::VelocityFieldTransform< TParametersValueType, NDimensions >::Pointer

Definition at line 43 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldType::PointType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::PointType

Definition at line 104 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldType::RegionType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::RegionType

Definition at line 100 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::ScalarType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::ScalarType

Scalar type.

Definition at line 56 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldTransform itk::VelocityFieldTransform< TParametersValueType, NDimensions >::Self

Standard class typedefs.

Definition at line 41 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldType::SizeType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SizeType

Definition at line 101 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldType::SpacingType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SpacingType

Definition at line 102 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef DisplacementFieldTransform<TParametersValueType, NDimensions> itk::VelocityFieldTransform< TParametersValueType, NDimensions >::Superclass

Definition at line 42 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Superclass::TransformCategoryType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::TransformCategoryType

Transform category type.

Definition at line 65 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldInterpolatorType::Pointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::VelocityFieldInterpolatorPointer

Definition at line 108 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VectorInterpolateImageFunction<VelocityFieldType, ScalarType> itk::VelocityFieldTransform< TParametersValueType, NDimensions >::VelocityFieldInterpolatorType

Definition at line 107 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef VelocityFieldType::Pointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::VelocityFieldPointer

Definition at line 96 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

typedef Image<OutputVectorType, VelocityFieldDimension> itk::VelocityFieldTransform< TParametersValueType, NDimensions >::VelocityFieldType

Define the displacement field type and corresponding interpolator type.

Definition at line 95 of file itkVelocityFieldTransform.h.

Constructor & Destructor Documentation

template<typename TParametersValueType , unsigned int NDimensions>

itk::VelocityFieldTransform< TParametersValueType, NDimensions >::VelocityFieldTransform ( )

protected

Referenced by itk::VelocityFieldTransform< TParametersValueType, NDimensions >::IntegrateVelocityField().

template<typename TParametersValueType , unsigned int NDimensions>

virtual itk::VelocityFieldTransform< TParametersValueType, NDimensions >::~VelocityFieldTransform ( )

protectedvirtual

Referenced by itk::VelocityFieldTransform< TParametersValueType, NDimensions >::IntegrateVelocityField().

template<typename TParametersValueType , unsigned int NDimensions>

itk::VelocityFieldTransform< TParametersValueType, NDimensions >::VelocityFieldTransform ( const Self &  )

private

Member Function Documentation

template<typename TParametersValueType , unsigned int NDimensions>

DisplacementFieldType::Pointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::CopyDisplacementField ( const DisplacementFieldType *  ) const

protected

Referenced by itk::VelocityFieldTransform< TParametersValueType, NDimensions >::IntegrateVelocityField().

template<typename TParametersValueType , unsigned int NDimensions>

virtual::itk::LightObject::Pointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >.

template<typename TParametersValueType , unsigned int NDimensions>

bool itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetInverse

(

Self *

inverse

)

const

Return an inverse of this transform.

Referenced by itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetDisplacementField().

template<typename TParametersValueType , unsigned int NDimensions>

virtual InverseTransformBasePointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetInverseTransform ( ) const

overridevirtual

Return an inverse of this transform.

Reimplemented from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >.

Referenced by itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetDisplacementField().

template<typename TParametersValueType , unsigned int NDimensions>

virtual ScalarType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetLowerTimeBound ( ) const

virtual

Get the lower time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1]

template<typename TParametersValueType , unsigned int NDimensions>

virtual VelocityFieldType* itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetModifiableVelocityField ( )

virtual

Get/Set the velocity field. Set the displacement field. Create special set accessor to update interpolator and assign displacement field to transform parameters container.

Referenced by itk::TimeVaryingVelocityFieldTransform< TParametersValueType, NDimensions >::GetModifiableTimeVaryingVelocityField(), itk::TimeVaryingVelocityFieldTransform< TParametersValueType, NDimensions >::GetTimeVaryingVelocityField(), and itk::TimeVaryingBSplineVelocityFieldTransform< TParametersValueType, NDimensions >::GetTimeVaryingVelocityFieldControlPointLattice().

template<typename TParametersValueType , unsigned int NDimensions>

virtual VelocityFieldInterpolatorType* itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetModifiableVelocityFieldInterpolator ( )

virtual

Get/Set the interpolator. Create out own set accessor that assigns the velocity field

template<typename TParametersValueType , unsigned int NDimensions>

virtual const char* itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TParametersValueType, NDimensions >, itk::TimeVaryingVelocityFieldTransform< TParametersValueType, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TParametersValueType, NDimensions >.

template<typename TParametersValueType , unsigned int NDimensions>

virtual unsigned int itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetNumberOfIntegrationSteps ( ) const

virtual

Get the number of integration steps. Default = 100;

template<typename TParametersValueType , unsigned int NDimensions>

virtual ScalarType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetUpperTimeBound ( ) const

virtual

Get the upper time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1]

template<typename TParametersValueType , unsigned int NDimensions>

virtual const VelocityFieldType* itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetVelocityField ( ) const

virtual

Get/Set the velocity field. Set the displacement field. Create special set accessor to update interpolator and assign displacement field to transform parameters container.

Referenced by itk::TimeVaryingVelocityFieldTransform< TParametersValueType, NDimensions >::GetTimeVaryingVelocityField().

template<typename TParametersValueType , unsigned int NDimensions>

virtual const VelocityFieldInterpolatorType* itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetVelocityFieldInterpolator ( ) const

virtual

Get/Set the interpolator. Create out own set accessor that assigns the velocity field

template<typename TParametersValueType , unsigned int NDimensions>

virtual const unsigned long& itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetVelocityFieldSetTime ( ) const

virtual

Get the modification time of velocity field

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::IntegrateVelocityField ( )

inlinevirtual

Trigger the computation of the displacement field by integrating the velocity field.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TParametersValueType, NDimensions >, and itk::TimeVaryingVelocityFieldTransform< TParametersValueType, NDimensions >.

Definition at line 158 of file itkVelocityFieldTransform.h.

References itk::VelocityFieldTransform< TParametersValueType, NDimensions >::CopyDisplacementField(), itk::VelocityFieldTransform< TParametersValueType, NDimensions >::InternalClone(), itk::VelocityFieldTransform< TParametersValueType, NDimensions >::PrintSelf(), itk::VelocityFieldTransform< TParametersValueType, NDimensions >::VelocityFieldTransform(), and itk::VelocityFieldTransform< TParametersValueType, NDimensions >::~VelocityFieldTransform().

template<typename TParametersValueType , unsigned int NDimensions>

virtual LightObject::Pointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::InternalClone ( ) const

overrideprotectedvirtual

Clone the current transform

Reimplemented from itk::Transform< TParametersValueType, NDimensions, NDimensions >.

Referenced by itk::VelocityFieldTransform< TParametersValueType, NDimensions >::IntegrateVelocityField().

template<typename TParametersValueType , unsigned int NDimensions>

static Pointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::New ( )

static

New macro for creation of through a Smart Pointer

template<typename TParametersValueType , unsigned int NDimensions>

void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::operator= ( const Self &  )

private

template<typename TParametersValueType , unsigned int NDimensions>

void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >.

Referenced by itk::VelocityFieldTransform< TParametersValueType, NDimensions >::IntegrateVelocityField().

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetDisplacementField ( DisplacementFieldType *  displacementField )

inlineoverridevirtual

Set the deformation field. We want to override the base class implementation since we don't want to optimize over the deformation field for this class but rather the time-varying velocity field

Reimplemented from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >.

Definition at line 138 of file itkVelocityFieldTransform.h.

References itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetInverse(), itk::VelocityFieldTransform< TParametersValueType, NDimensions >::GetInverseTransform(), itk::DisplacementFieldTransform< TParametersValueType, NDimensions >::m_DisplacementField, itk::Object::Modified(), and itk::VelocityFieldTransform< TParametersValueType, NDimensions >::UpdateTransformParameters().

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetFixedParameters ( const FixedParametersType &  )

overridevirtual

This method sets the fixed parameters of the transform. For a displacement field transform, the fixed parameters are the following: field size, field origin, field spacing, and field direction.

Note: If a displacement field already exists, this function creates a new one with zero displacement (identity transform). If an inverse displacement field exists, a new one is also created.

Reimplemented from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >.

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetFixedParametersFromVelocityField ( ) const

privatevirtual

Convenience method which reads the information from the current velocity field into m_FixedParameters.

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetLowerTimeBound ( ScalarType  _arg )

virtual

Set the lower time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1]

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetNumberOfIntegrationSteps ( unsigned int  _arg )

virtual

Set the number of integration steps. Default = 100;

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetUpperTimeBound ( ScalarType  _arg )

virtual

Set the upper time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1]

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetVelocityField ( VelocityFieldType *  )

virtual

Get/Set the velocity field. Set the displacement field. Create special set accessor to update interpolator and assign displacement field to transform parameters container.

Referenced by itk::TimeVaryingVelocityFieldTransform< TParametersValueType, NDimensions >::SetTimeVaryingVelocityField(), and itk::TimeVaryingBSplineVelocityFieldTransform< TParametersValueType, NDimensions >::SetTimeVaryingVelocityFieldControlPointLattice().

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetVelocityFieldInterpolator ( VelocityFieldInterpolatorType *  )

virtual

Get/Set the interpolator. Create out own set accessor that assigns the velocity field

template<typename TParametersValueType , unsigned int NDimensions>

virtual void itk::VelocityFieldTransform< TParametersValueType, NDimensions >::UpdateTransformParameters ( const DerivativeType &  update, ScalarType  factor = 1.0  )

overridevirtual

Reimplemented from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TParametersValueType, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TParametersValueType, NDimensions >.

Referenced by itk::VelocityFieldTransform< TParametersValueType, NDimensions >::SetDisplacementField().

Member Data Documentation

template<typename TParametersValueType , unsigned int NDimensions>

const unsigned int itk::VelocityFieldTransform< TParametersValueType, NDimensions >::Dimension = NDimensions

static

Dimension of the vector spaces.

Definition at line 88 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

ScalarType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::m_LowerTimeBound

protected

Definition at line 205 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

unsigned int itk::VelocityFieldTransform< TParametersValueType, NDimensions >::m_NumberOfIntegrationSteps

protected

Definition at line 208 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

ScalarType itk::VelocityFieldTransform< TParametersValueType, NDimensions >::m_UpperTimeBound

protected

Definition at line 206 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

VelocityFieldPointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::m_VelocityField

protected

Definition at line 210 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

VelocityFieldInterpolatorType::Pointer itk::VelocityFieldTransform< TParametersValueType, NDimensions >::m_VelocityFieldInterpolator

protected

The interpolator.

Definition at line 213 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

unsigned long itk::VelocityFieldTransform< TParametersValueType, NDimensions >::m_VelocityFieldSetTime

protected

Track when the VELOCITY field was last set/assigned, as distinct from when it may have had its contents modified.

Definition at line 217 of file itkVelocityFieldTransform.h.

template<typename TParametersValueType , unsigned int NDimensions>

const unsigned int itk::VelocityFieldTransform< TParametersValueType, NDimensions >::VelocityFieldDimension = NDimensions + 1

static

Dimension of the velocity field .

Definition at line 85 of file itkVelocityFieldTransform.h.

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The documentation for this class was generated from the following file:

• itkVelocityFieldTransform.h