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itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions > Class Template Reference
Group IO » Module ITKIOTransformMINC

#include <itkMINCTransformAdapter.h>

+ Inheritance diagram for itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >:
+ Collaboration diagram for itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >:

Detailed Description

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
class itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >

ITK wrapper around MINC general transform functions, supports all the transformations that MINC XFM supports.

Author
Vladimir S. FONOV Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal Canada 2012

Definition at line 48 of file itkMINCTransformAdapter.h.

Public Types

typedef SmartPointer< const Self > ConstPointer
 
typedef Superclass::FixedParametersType FixedParametersType
 
typedef CovariantVector< TParametersValueType, itkGetStaticConstMacro(InputSpaceDimension)> InputCovariantVectorType
 
typedef Point< TParametersValueType, NInputDimensions > InputPointType
 
typedef VariableLengthVector< TParametersValueType > InputVectorPixelType
 
typedef vnl_vector_fixed< TParametersValueType, NInputDimensions > InputVnlVectorType
 
typedef Superclass::JacobianType JacobianType
 
typedef Superclass::NumberOfParametersType NumberOfParametersType
 
typedef CovariantVector< TParametersValueType, itkGetStaticConstMacro(OutputSpaceDimension)> OutputCovariantVectorType
 
typedef Point< TParametersValueType, NInputDimensions > OutputPointType
 
typedef VariableLengthVector< TParametersValueType > OutputVectorPixelType
 
typedef vnl_vector_fixed< TParametersValueType, NOutputDimensions > OutputVnlVectorType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< Self > Pointer
 
typedef double ScalarType
 
typedef MINCTransformAdapter Self
 
typedef Transform< TParametersValueType, NInputDimensions, NOutputDimensions > Superclass
 
typedef Vector< TParametersValueType, itkGetStaticConstMacro(InputSpaceDimension)> InputVectorType
 
typedef Vector< TParametersValueType, itkGetStaticConstMacro(OutputSpaceDimension)> OutputVectorType
 
- Public Types inherited from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >
typedef SmartPointer< const Self > ConstPointer
 
typedef Array< ParametersValueType > DerivativeType
 
typedef Matrix< double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)> DirectionChangeMatrix
 
typedef Superclass::FixedParametersType FixedParametersType
 
typedef Superclass::FixedParametersValueType FixedParametersValueType
 
typedef CovariantVector< TParametersValueType, NInputDimensions > InputCovariantVectorType
 
typedef DiffusionTensor3D< TParametersValueType > InputDiffusionTensor3DType
 
typedef Matrix< double, itkGetStaticConstMacro(InputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)> InputDirectionMatrix
 
typedef Point< TParametersValueType, NInputDimensions > InputPointType
 
typedef SymmetricSecondRankTensor< TParametersValueType, NInputDimensions > InputSymmetricSecondRankTensorType
 
typedef VariableLengthVector< TParametersValueType > InputVectorPixelType
 
typedef Vector< TParametersValueType, NInputDimensions > InputVectorType
 
typedef vnl_vector_fixed< TParametersValueType, NInputDimensions > InputVnlVectorType
 
typedef InverseTransformBaseType::Pointer InverseTransformBasePointer
 
typedef Transform< TParametersValueType, NOutputDimensions, NInputDimensions > InverseTransformBaseType
 
typedef Array2D< ParametersValueType > JacobianType
 
typedef Matrix< TParametersValueType, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)> MatrixType
 
typedef Superclass::NumberOfParametersType NumberOfParametersType
 
typedef CovariantVector< TParametersValueType, NOutputDimensions > OutputCovariantVectorType
 
typedef DiffusionTensor3D< TParametersValueType > OutputDiffusionTensor3DType
 
typedef Matrix< double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(OutputSpaceDimension)> OutputDirectionMatrix
 
typedef Point< TParametersValueType, NOutputDimensions > OutputPointType
 
typedef SymmetricSecondRankTensor< TParametersValueType, NOutputDimensions > OutputSymmetricSecondRankTensorType
 
typedef VariableLengthVector< TParametersValueType > OutputVectorPixelType
 
typedef Vector< TParametersValueType, NOutputDimensions > OutputVectorType
 
typedef vnl_vector_fixed< TParametersValueType, NOutputDimensions > OutputVnlVectorType
 
typedef Superclass::ParametersType ParametersType
 
typedef Superclass::ParametersValueType ParametersValueType
 
typedef SmartPointer< Self > Pointer
 
typedef ParametersValueType ScalarType
 
typedef Transform Self
 
typedef TransformBaseTemplate< TParametersValueType > Superclass
 
typedef Superclass::TransformCategoryType TransformCategoryType
 
- Public Types inherited from itk::TransformBaseTemplate< TParametersValueType >
typedef SmartPointer< const Self > ConstPointer
 
typedef OptimizerParameters< FixedParametersValueType > FixedParametersType
 
typedef double FixedParametersValueType
 
typedef IdentifierType NumberOfParametersType
 
typedef OptimizerParameters< ParametersValueType > ParametersType
 
typedef TParametersValueType ParametersValueType
 
typedef SmartPointer< Self > Pointer
 
typedef TransformBaseTemplate Self
 
typedef Object Superclass
 
enum  TransformCategoryType {
  UnknownTransformCategory =0,
  Linear =1,
  BSpline =2,
  Spline =3,
  DisplacementField =4,
  VelocityField =5
}
 
- Public Types inherited from itk::Object
typedef SmartPointer< const Self > ConstPointer
 
typedef SmartPointer< Self > Pointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const Self > ConstPointer
 
typedef SmartPointer< Self > Pointer
 
typedef LightObject Self
 

Public Member Functions

virtual void ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override
 
virtual ::itk::LightObject::Pointer CreateAnother () const
 
void estimate_local_jacobian (const InputPointType &orig, vnl_matrix_fixed< double, 3, 3 > &m)
 
virtual const char * GetNameOfClass () const
 
virtual NumberOfParametersType GetNumberOfParameters (void) const override
 
virtual const ParametersType & GetParameters (void) const override
 
void Invert (void)
 
void OpenXfm (const char *xfm)
 
virtual void SetFixedParameters (const FixedParametersType &) override
 
virtual void SetIdentity (void)
 
virtual void SetParameters (const ParametersType &) override
 
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &vector) const override
 
virtual OutputVectorPixelType TransformCovariantVector (const InputVectorPixelType &vector) const override
 
virtual OutputPointType TransformPoint (const InputPointType &point) const override
 
OutputVectorType TransformVector (const InputVectorType &vector) const override
 
OutputVnlVectorType TransformVector (const InputVnlVectorType &vector) const override
 
OutputVectorPixelType TransformVector (const InputVectorPixelType &vector) const override
 
OutputVectorType TransformVector (const InputVectorType &vector, const InputPointType &) const override
 
OutputVnlVectorType TransformVector (const InputVnlVectorType &vector, const InputPointType &) const override
 
OutputVectorPixelType TransformVector (const InputVectorPixelType &vector, const InputPointType &) const override
 
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &vector, const InputPointType &) const override
 
virtual OutputVectorPixelType TransformCovariantVector (const InputVectorPixelType &vector, const InputPointType &) const override
 
- Public Member Functions inherited from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >
virtual void ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &jacobian) const
 
virtual void ComputeJacobianWithRespectToParametersCachedTemporaries (const InputPointType &p, JacobianType &jacobian, JacobianType &) const
 
virtual void ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const
 
virtual void CopyInFixedParameters (const FixedParametersValueType *const begin, const FixedParametersValueType *const end) override
 
virtual void CopyInParameters (const ParametersValueType *const begin, const ParametersValueType *const end) override
 
virtual const FixedParametersType & GetFixedParameters (void) const override
 
unsigned int GetInputSpaceDimension (void) const override
 
bool GetInverse (Self *) const
 
virtual InverseTransformBasePointer GetInverseTransform () const
 
virtual NumberOfParametersType GetNumberOfFixedParameters () const
 
virtual NumberOfParametersType GetNumberOfLocalParameters (void) const
 
unsigned int GetOutputSpaceDimension (void) const override
 
virtual TransformCategoryType GetTransformCategory () const override
 
virtual std::string GetTransformTypeAsString () const override
 
virtual bool IsLinear () const
 
 itkCloneMacro (Self)
 
virtual void SetParametersByValue (const ParametersType &p) override
 
virtual OutputDiffusionTensor3DType TransformDiffusionTensor3D (const InputDiffusionTensor3DType &) const
 
virtual OutputDiffusionTensor3DType TransformDiffusionTensor3D (const InputDiffusionTensor3DType &tensor, const InputPointType &point) const
 
virtual OutputVectorPixelType TransformDiffusionTensor3D (const InputVectorPixelType &) const
 
virtual OutputVectorPixelType TransformDiffusionTensor3D (const InputVectorPixelType &tensor, const InputPointType &point) const
 
virtual OutputSymmetricSecondRankTensorType TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor, const InputPointType &point) const
 
virtual OutputSymmetricSecondRankTensorType TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &) const
 
virtual OutputVectorPixelType TransformSymmetricSecondRankTensor (const InputVectorPixelType &) const
 
virtual OutputVectorPixelType TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor, const InputPointType &point) const
 
virtual void UpdateTransformParameters (const DerivativeType &update, ParametersValueType factor=1.0)
 
- Public Member Functions inherited from itk::TransformBaseTemplate< TParametersValueType >
virtual void CopyInFixedParameters (const FixedParametersValueType *const begin, const FixedParametersValueType *const end)=0
 
virtual void CopyInParameters (const ParametersValueType *const begin, const ParametersValueType *const end)=0
 
virtual void SetFixedParameters (const FixedParametersType &)=0
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
Command * GetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionary & GetMetaDataDictionary ()
 
const MetaDataDictionary & GetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStamp & GetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) override
 
virtual void UnRegister () const noexcept override
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static const unsigned int InputSpaceDimension = NInputDimensions
 
static const unsigned int OutputSpaceDimension = NOutputDimensions
 
- Static Public Attributes inherited from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >
static const unsigned int InputSpaceDimension = NInputDimensions
 
static const unsigned int OutputSpaceDimension = NOutputDimensions
 

Protected Member Functions

void cleanup (void)
 
 MINCTransformAdapter ()
 
virtual ~MINCTransformAdapter ()
 
- Protected Member Functions inherited from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >
virtual LightObject::Pointer InternalClone () const override
 
OutputDiffusionTensor3DType PreservationOfPrincipalDirectionDiffusionTensor3DReorientation (const InputDiffusionTensor3DType, const JacobianType) const
 
 Transform ()
 
 Transform (NumberOfParametersType NumberOfParameters)
 
virtual ~Transform ()
 
- Protected Member Functions inherited from itk::TransformBaseTemplate< TParametersValueType >
 TransformBaseTemplate ()
 
virtual ~TransformBaseTemplate ()
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void PrintSelf (std::ostream &os, Indent indent) const override
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Protected Attributes

bool m_Initialized
 
bool m_Initialized_invert
 
bool m_Invert
 
ParametersType m_Parameters
 
VIO_General_transform m_Xfm
 
VIO_General_transform m_Xfm_inv
 
- Protected Attributes inherited from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >
DirectionChangeMatrix m_DirectionChange
 
FixedParametersType m_FixedParameters
 
ParametersType m_Parameters
 
- Protected Attributes inherited from itk::LightObject
AtomicInt< int > m_ReferenceCount
 

Private Member Functions

 MINCTransformAdapter (const Self &) ITK_DELETE_FUNCTION
 
void operator= (const Self &) ITK_DELETE_FUNCTION
 

Member Typedef Documentation

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef SmartPointer<const Self> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::ConstPointer

Definition at line 57 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::FixedParametersType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::FixedParametersType

Definition at line 77 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef CovariantVector<TParametersValueType, itkGetStaticConstMacro(InputSpaceDimension)> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::InputCovariantVectorType

Standard covariant vector type for this class

Definition at line 93 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Point<TParametersValueType,NInputDimensions > itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::InputPointType

Standard coordinate point type for this class

Definition at line 98 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef VariableLengthVector<TParametersValueType> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::InputVectorPixelType

Standard variable length vector type for this class this provides an interface for the VectorImage class

Definition at line 89 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Vector<TParametersValueType, itkGetStaticConstMacro(InputSpaceDimension)> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::InputVectorType

Standard vector type for this class.

Definition at line 83 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef vnl_vector_fixed<TParametersValueType, NInputDimensions> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::InputVnlVectorType

Standard vnl_vector type for this class.

Definition at line 102 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::JacobianType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::JacobianType

Type of the Jacobian matrix.

Definition at line 80 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::NumberOfParametersType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::NumberOfParametersType

Definition at line 59 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef CovariantVector<TParametersValueType, itkGetStaticConstMacro(OutputSpaceDimension)> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OutputCovariantVectorType

Definition at line 95 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Point<TParametersValueType,NInputDimensions > itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OutputPointType

Definition at line 99 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef VariableLengthVector<TParametersValueType> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OutputVectorPixelType

Definition at line 90 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Vector<TParametersValueType, itkGetStaticConstMacro(OutputSpaceDimension)> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OutputVectorType

Standard vector type for this class.

Definition at line 84 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef vnl_vector_fixed<TParametersValueType, NOutputDimensions> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OutputVnlVectorType

Definition at line 103 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::ParametersType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::ParametersType

Type of the input parameters.

Definition at line 76 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef SmartPointer<Self> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::Pointer

Definition at line 56 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef double itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::ScalarType

Type of the input parameters.

Definition at line 73 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef MINCTransformAdapter itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::Self

Standard class typedefs.

Definition at line 52 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Transform<TParametersValueType, NInputDimensions, NOutputDimensions> itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::Superclass

Definition at line 54 of file itkMINCTransformAdapter.h.

Constructor & Destructor Documentation

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::MINCTransformAdapter ( )
inlineprotected

Definition at line 288 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::~MINCTransformAdapter ( )
inlineprotectedvirtual

Definition at line 298 of file itkMINCTransformAdapter.h.

References itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::cleanup().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::MINCTransformAdapter ( const Self &  )
private

Member Function Documentation

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::cleanup ( void  )
inlineprotected

Definition at line 303 of file itkMINCTransformAdapter.h.

References itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Initialized, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Initialized_invert, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm, and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm_inv.

Referenced by itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OpenXfm(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::SetIdentity(), and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::~MINCTransformAdapter().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::ComputeJacobianWithRespectToParameters ( const InputPointType &  ,
JacobianType &   
) const
inlineoverridevirtual

Compute the Jacobian of the transformation

This method computes the Jacobian matrix of the transformation at a given input point. The rank of the Jacobian will also indicate if the transform is invertible at this point.

The Jacobian is be expressed as a matrix of partial derivatives of the output point components with respect to the parameters that defined the transform:

\[ J=\left[ \begin{array}{cccc} \frac{\partial x_{1}}{\partial p_{1}} & \frac{\partial x_{1}}{\partial p_{2}} & \cdots & \frac{\partial x_{1}}{\partial p_{m}}\\ \frac{\partial x_{2}}{\partial p_{1}} & \frac{\partial x_{2}}{\partial p_{2}} & \cdots & \frac{\partial x_{2}}{\partial p_{m}}\\ \vdots & \vdots & \ddots & \vdots \\ \frac{\partial x_{n}}{\partial p_{1}} & \frac{\partial x_{n}}{\partial p_{2}} & \cdots & \frac{\partial x_{n}}{\partial p_{m}} \end{array}\right] \]

This is also used for efficient computation of a point-local jacobian for dense transforms. jacobian is assumed to be thread-local variable, otherwise memory corruption will most likely occur during multi-threading. To avoid repeatitive memory allocation, pass in 'jacobian' with its size already set.

Implements itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 240 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual::itk::LightObject::Pointer itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::estimate_local_jacobian ( const InputPointType &  orig,
vnl_matrix_fixed< double, 3, 3 > &  m 
)
inline

use finate element difference to estimate local jacobian

Definition at line 126 of file itkMINCTransformAdapter.h.

References itk::Math::e, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Invert, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm, and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm_inv.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual const char* itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual NumberOfParametersType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::GetNumberOfParameters ( void  ) const
inlineoverridevirtual

Return the number of parameters that completely define the Transfom

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 247 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual const ParametersType& itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::GetParameters ( void  ) const
inlineoverridevirtual

Get the Transformation Parameters.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 261 of file itkMINCTransformAdapter.h.

References itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Parameters.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::Invert ( void  )
inline

Definition at line 275 of file itkMINCTransformAdapter.h.

References itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Initialized, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Initialized_invert, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Invert, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm, and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm_inv.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
static Pointer itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::New ( )
static

New method for creating an object using a factory.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OpenXfm ( const char *  xfm)
inline

Definition at line 267 of file itkMINCTransformAdapter.h.

References itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::cleanup(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Initialized, and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::operator= ( const Self &  )
private
template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::SetFixedParameters ( const FixedParametersType &  )
inlineoverridevirtual

Set the fixed parameters and update internal transformation.

Implements itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 235 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::SetIdentity ( void  )
inlinevirtual

Set the transformation to an Identity

Definition at line 230 of file itkMINCTransformAdapter.h.

References itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::cleanup().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::SetParameters ( const ParametersType &  )
inlineoverridevirtual

Set the Transformation Parameters and update the internal transformation.

Implements itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 256 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputCovariantVectorType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputCovariantVectorType &  vector,
const InputPointType &   
) const
inlineoverridevirtual

Method to transform a CovariantVector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 196 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputCovariantVectorType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputCovariantVectorType &  vector) const
inlineoverridevirtual

Method to transform a CovariantVector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 206 of file itkMINCTransformAdapter.h.

References itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformCovariantVector().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputVectorPixelType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputVectorPixelType &  vector) const
inlineoverridevirtual

Method to transform a CovariantVector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 213 of file itkMINCTransformAdapter.h.

References itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformCovariantVector().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputVectorPixelType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputVectorPixelType &  vector,
const InputPointType &   
) const
inlineoverridevirtual

Method to transform a CovariantVector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 220 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputPointType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformPoint ( const InputPointType &  point) const
inlineoverridevirtual

Method to transform a point.

Implements itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 106 of file itkMINCTransformAdapter.h.

References itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Initialized, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Initialized_invert, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Invert, itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm, and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm_inv.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
OutputVectorType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorType &  vector,
const InputPointType &   
) const
inlineoverridevirtual

Method to transform a vector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 152 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
OutputVnlVectorType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVnlVectorType &  vector,
const InputPointType &   
) const
inlineoverridevirtual

Method to transform a vector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 160 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
OutputVectorType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorType &  vector) const
inlineoverridevirtual

Method to transform a vector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 168 of file itkMINCTransformAdapter.h.

References itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformVector().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
OutputVnlVectorType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVnlVectorType &  vector) const
inlineoverridevirtual

Method to transform a vector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 174 of file itkMINCTransformAdapter.h.

References itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformVector().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
OutputVectorPixelType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorPixelType &  vector) const
inlineoverridevirtual

Method to transform a vector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 180 of file itkMINCTransformAdapter.h.

References itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformVector().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
OutputVectorPixelType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorPixelType &  vector,
const InputPointType &   
) const
inlineoverridevirtual

Method to transform a vector.

Reimplemented from itk::Transform< TParametersValueType, NInputDimensions, NOutputDimensions >.

Definition at line 186 of file itkMINCTransformAdapter.h.

Member Data Documentation

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const unsigned int itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::InputSpaceDimension = NInputDimensions
static

Dimension of the domain space.

Definition at line 68 of file itkMINCTransformAdapter.h.

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
bool itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Initialized
protected

Definition at line 323 of file itkMINCTransformAdapter.h.

Referenced by itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::cleanup(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::Invert(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OpenXfm(), and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformPoint().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
bool itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Initialized_invert
protected

Definition at line 324 of file itkMINCTransformAdapter.h.

Referenced by itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::cleanup(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::Invert(), and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformPoint().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
bool itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Invert
protected

Definition at line 322 of file itkMINCTransformAdapter.h.

Referenced by itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::estimate_local_jacobian(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::Invert(), and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformPoint().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
ParametersType itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Parameters
protected

Definition at line 317 of file itkMINCTransformAdapter.h.

Referenced by itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::GetParameters().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
VIO_General_transform itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm
mutableprotected

Definition at line 319 of file itkMINCTransformAdapter.h.

Referenced by itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::cleanup(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::estimate_local_jacobian(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::Invert(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OpenXfm(), and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformPoint().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
VIO_General_transform itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::m_Xfm_inv
mutableprotected

Definition at line 320 of file itkMINCTransformAdapter.h.

Referenced by itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::cleanup(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::estimate_local_jacobian(), itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::Invert(), and itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::TransformPoint().

template<typename TParametersValueType = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const unsigned int itk::MINCTransformAdapter< TParametersValueType, NInputDimensions, NOutputDimensions >::OutputSpaceDimension = NOutputDimensions
static

Dimension of the domain space.

Definition at line 69 of file itkMINCTransformAdapter.h.

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