ITK  4.10.0
Insight Segmentation and Registration Toolkit
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itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter > Class Template Reference
Group Core » Module ITKGPUFiniteDifference

#include <itkGPUDenseFiniteDifferenceImageFilter.h>

+ Inheritance diagram for itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >:
+ Collaboration diagram for itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >:

Detailed Description

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
class itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >

This is the GPU version of DenseFiniteDifferenceImageFilter class. Currently only single-threaded, single GPU version is implemented. See documentation for FiniteDifferenceImageFilter for an overview of the iterative finite difference algorithm:

$u_{\mathbf{i}}^{n+1}=u^n_{\mathbf{i}}+\Delta u^n_{\mathbf{i}}\Delta t$
This class defines an update buffer for $ \Delta $ and the methods GPUCalculateChange() and GPUApplyUpdate(), which are GPU version of CalculateChange() and ApplyUpdate().

Use m_UpdateBuffer defined in CPU superclass (DenseFiniteDifferenceImageFilter).

How to use this class
This filter can be used as a base class for GPU implementation of DenseFiniteDifferenceImageFilter.

Definition at line 54 of file itkGPUDenseFiniteDifferenceImageFilter.h.

Public Types

typedef SmartPointer< const Self > ConstPointer
 
typedef TParentImageFilter CPUSuperclass
 
typedef GPUSuperclass::FiniteDifferenceFunctionType FiniteDifferenceFunctionType
 
typedef GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter > GPUSuperclass
 
typedef GPUSuperclass::InputImageType InputImageType
 
typedef GPUSuperclass::OutputImageType OutputImageType
 
typedef GPUSuperclass::PixelType PixelType
 
typedef SmartPointer< Self > Pointer
 
typedef GPUDenseFiniteDifferenceImageFilter Self
 
typedef GPUSuperclass::TimeStepType TimeStepType
 
typedef OutputImageType UpdateBufferType
 
- Public Types inherited from itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
typedef SmartPointer< const Self > ConstPointer
 
typedef TParentImageFilter CPUSuperclass
 
enum  FilterStateType {
  UNINITIALIZED = 0,
  INITIALIZED = 1
}
 
typedef GPUFiniteDifferenceFunction< TOutputImage >::DifferenceFunctionType FiniteDifferenceFunctionType
 
typedef GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter > GPUSuperclass
 
typedef TInputImage InputImageType
 
typedef TInputImage::PixelType InputPixelType
 
typedef NumericTraits< InputPixelType >::ValueType InputPixelValueType
 
typedef FiniteDifferenceFunctionType::NeighborhoodScalesType NeighborhoodScalesType
 
typedef TOutputImage OutputImageType
 
typedef TOutputImage::PixelType OutputPixelType
 
typedef NumericTraits< OutputPixelType >::ValueType OutputPixelValueType
 
typedef OutputPixelType PixelType
 
typedef SmartPointer< Self > Pointer
 
typedef FiniteDifferenceFunctionType::RadiusType RadiusType
 
typedef GPUFiniteDifferenceImageFilter Self
 
typedef FiniteDifferenceFunctionType::TimeStepType TimeStepType
 
- Public Types inherited from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
typedef SmartPointer< const Self > ConstPointer
 
typedef TParentImageFilter CPUSuperclass
 
typedef GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter > GPUSuperclass
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef GPUSuperclass::OutputImagePixelType OutputImagePixelType
 
typedef GPUSuperclass::OutputImagePointer OutputImagePointer
 
typedef GPUSuperclass::OutputImageRegionType OutputImageRegionType
 
typedef GPUSuperclass::OutputImageType OutputImageType
 
typedef SmartPointer< Self > Pointer
 
typedef GPUInPlaceImageFilter Self
 
- Public Types inherited from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >
typedef SmartPointer< const Self > ConstPointer
 
typedef Superclass::DataObjectIdentifierType DataObjectIdentifierType
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef Superclass::OutputImagePixelType OutputImagePixelType
 
typedef Superclass::OutputImageRegionType OutputImageRegionType
 
typedef SmartPointer< Self > Pointer
 
typedef GPUImageToImageFilter Self
 
typedef TParentImageFilter Superclass
 

Public Member Functions

virtual const char * GetNameOfClass () const
 
 itkGetOpenCLSourceFromKernelMacro (GPUDenseFiniteDifferenceImageFilterKernel)
 
- Public Member Functions inherited from itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
virtual const FiniteDifferenceFunctionType::Pointer & GetDifferenceFunction () const override
 
void SetStateToInitialized ()
 
void SetStateToUninitialized ()
 
virtual void SetDifferenceFunction (FiniteDifferenceFunctionType *differenceFunction) override
 
virtual void SetState (FilterStateType _arg)
 
virtual const FilterStateType & GetState () const
 
virtual const TimeProbe & GetInitTime () const
 
virtual const TimeProbe & GetComputeUpdateTime () const
 
virtual const TimeProbe & GetApplyUpdateTime () const
 
virtual const TimeProbe & GetSmoothFieldTime () const
 
- Public Member Functions inherited from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >
virtual ::itk::LightObject::Pointer CreateAnother () const
 
void GenerateData () override
 
virtual bool GetGPUEnabled () const
 
virtual void GPUEnabledOff ()
 
virtual void GPUEnabledOn ()
 
virtual void GraftOutput (DataObject *output) override
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output) override
 
virtual void SetGPUEnabled (bool _arg)
 

Static Public Attributes

static const unsigned int ImageDimension = GPUSuperclass::ImageDimension
 
- Static Public Attributes inherited from itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
static const unsigned int ImageDimension = OutputImageType::ImageDimension
 
- Static Public Attributes inherited from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 

Protected Member Functions

virtual void AllocateUpdateBuffer () override
 
virtual void ApplyUpdate (const TimeStepType &dt) override
 
virtual void CopyInputToOutput () override
 
virtual UpdateBufferType * GetUpdateBuffer () override
 
virtual void GPUApplyUpdate (const TimeStepType &dt) override
 
virtual TimeStepType GPUCalculateChange () override
 
 GPUDenseFiniteDifferenceImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
 ~GPUDenseFiniteDifferenceImageFilter ()
 
- Protected Member Functions inherited from itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
virtual void GenerateInputRequestedRegion () override
 
virtual void GPUApplyUpdate (const TimeStepType &dt)=0
 
 GPUFiniteDifferenceImageFilter ()
 
virtual void GPUGenerateData () override
 
virtual bool Halt () override
 
virtual void Initialize () override
 
virtual void InitializeIteration () override
 
virtual void PostProcessOutput () override
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
virtual TimeStepType ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const override
 
virtual bool ThreadedHalt (void *) override
 
 ~GPUFiniteDifferenceImageFilter ()
 
- Protected Member Functions inherited from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
virtual void AllocateOutputs () override
 
 GPUInPlaceImageFilter ()
 
virtual void ReleaseInputs () override
 
 ~GPUInPlaceImageFilter ()
 
- Protected Member Functions inherited from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >
 GPUImageToImageFilter ()
 
 ~GPUImageToImageFilter ()
 

Protected Attributes

int m_ApplyUpdateGPUKernelHandle
 
- Protected Attributes inherited from itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
TimeProbe m_ApplyUpdateTime
 
TimeProbe m_ComputeUpdateTime
 
TimeProbe m_InitTime
 
bool m_ManualReinitialization
 
double m_MaximumRMSError
 
double m_RMSChange
 
TimeProbe m_SmoothFieldTime
 
- Protected Attributes inherited from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >
GPUKernelManager::Pointer m_GPUKernelManager
 

Private Member Functions

 GPUDenseFiniteDifferenceImageFilter (const Self &) ITK_DELETE_FUNCTION
 
void operator= (const Self &) ITK_DELETE_FUNCTION
 

Additional Inherited Members

- Static Public Member Functions inherited from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >
static Pointer New ()
 

Member Typedef Documentation

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef SmartPointer< const Self > itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::ConstPointer

Definition at line 64 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef TParentImageFilter itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::CPUSuperclass

Definition at line 62 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUSuperclass::FiniteDifferenceFunctionType itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::FiniteDifferenceFunctionType

Definition at line 72 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter > itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUSuperclass

Definition at line 61 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUSuperclass::InputImageType itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::InputImageType

Convenient typedefs

Definition at line 67 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUSuperclass::OutputImageType itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::OutputImageType

Definition at line 71 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUSuperclass::PixelType itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::PixelType

The pixel type of the output image will be used in computations. Inherited from the superclass.

Definition at line 80 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef SmartPointer< Self > itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::Pointer

Definition at line 63 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUDenseFiniteDifferenceImageFilter itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::Self

Standard class typedefs

Definition at line 60 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUSuperclass::TimeStepType itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::TimeStepType

The value type of a time step. Inherited from the superclass.

Definition at line 83 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef OutputImageType itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::UpdateBufferType

The container type for the update buffer.

Definition at line 86 of file itkGPUDenseFiniteDifferenceImageFilter.h.

Constructor & Destructor Documentation

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUDenseFiniteDifferenceImageFilter ( )
protected
template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::~GPUDenseFiniteDifferenceImageFilter ( )
inlineprotected

Definition at line 104 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUDenseFiniteDifferenceImageFilter ( const Self &  )
private

Member Function Documentation

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::AllocateUpdateBuffer ( )
overrideprotectedvirtual

This method allocates storage in m_UpdateBuffer. It is called from Superclass::GenerateData().

Implements itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Referenced by itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, TParentImageFilter >::GetUpdateBuffer().

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::ApplyUpdate ( const TimeStepType &  dt)
overrideprotectedvirtual

This method applies changes from the m_UpdateBuffer to the output using the GPU. "dt" is the time step to use for the update of each pixel.

Reimplemented in itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >.

Referenced by itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, TParentImageFilter >::~GPUDenseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::CopyInputToOutput ( )
overrideprotectedvirtual

A simple method to copy the data from the input to the output. ( Supports "read-only" image adaptors in the case where the input image type converts to a different output image type. )

Implements itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >.

Referenced by itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, TParentImageFilter >::~GPUDenseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const char* itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods)

Reimplemented from itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >, itk::GPUGradientAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual UpdateBufferType* itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetUpdateBuffer ( )
inlineoverrideprotectedvirtual

Method to allow subclasses to get direct access to the update buffer

Definition at line 125 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUApplyUpdate ( const TimeStepType &  dt)
overrideprotectedvirtual

Referenced by itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, TParentImageFilter >::~GPUDenseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual TimeStepType itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUCalculateChange ( )
overrideprotectedvirtual

This method populates an update buffer with changes for each pixel in the output using the GPU. Returns value is a time step to be used for the update.

Implements itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Referenced by itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, TParentImageFilter >::~GPUDenseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::itkGetOpenCLSourceFromKernelMacro ( GPUDenseFiniteDifferenceImageFilterKernel  )

Get OpenCL Kernel source as a string, creates a GetOpenCLSource method

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
void itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::operator= ( const Self &  )
private
template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
void itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Referenced by itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, TParentImageFilter >::~GPUDenseFiniteDifferenceImageFilter().

Member Data Documentation

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
const unsigned int itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::ImageDimension = GPUSuperclass::ImageDimension
static

Dimensionality of input and output data is assumed to be the same. It is inherited from the superclass.

Definition at line 76 of file itkGPUDenseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TOutputImage, typename TParentImageFilter = DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >>
int itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_ApplyUpdateGPUKernelHandle
protected

Definition at line 134 of file itkGPUDenseFiniteDifferenceImageFilter.h.

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