[Insight-users] compilation problem itkN3MRIBiasFieldCorrectionImageFilter(taken from insight journal)
Luis Ibanez
luis.ibanez at kitware.com
Sat Oct 24 16:03:13 EDT 2009
Samuele,
I agree with Nick,
If you are using the binary installed versions of ITK-SNAP, then you
don't even need to have ITK in your computer.
You will only need ITK if you are planning to build ITK-SNAP from its
source code.
Note however
that the most recent version of SNAP is distributed under
a GPL license:
http://www.itksnap.org/pmwiki/pmwiki.php
and not the BSD license that ITK uses for the toolkits and for
InsightApplications.
That said,
Of course we encourage you to use ITK directly :-)
Regards,
Luis
-------------------------------------------------------------------------------------------
On Fri, Oct 23, 2009 at 9:27 AM, Nick Tustison <ntustison at wustl.edu> wrote:
> I don't know where you got that information but, unless I'm missing
> something, you shouldn't need a particular version of ITK to run the itksnap
> binary. It appears that those two remaining compilation errors are due to
> the fact that you're using an old version of ITK. You should update to the
> latest stable version of itk to use N3.
>
>
> On Fri, Oct 23, 2009 at 8:19 AM, Samuele Dietler <samuele_82 at hotmail.com>
> wrote:
>>
>> I use itk 3.8...because when i was looking to Itk-Snap the correct version
>> for working with it was itk 3.8
>> ________________________________
>> CC: insight-users at itk.org
>> From: ntustison at gmail.com
>> Subject: Re: [Insight-users] compilation problem
>> itkN3MRIBiasFieldCorrectionImageFilter(taken from insight journal)
>> Date: Fri, 23 Oct 2009 08:12:31 -0400
>> To: samuele_82 at hotmail.com
>>
>> It looks like there might be something else wrong besides the N3 code.
>> What version of ITK are you using?
>>
>>
>> On Oct 23, 2009, at 7:40 AM, Samuele Dietler wrote:
>>
>> Hello,
>> thank you, i was looking at your code and try some experiment for make it
>> working...The line is :
>>
>>
>> itkDebugMacro( "Iteration " << iteration << ": "
>> << " convergence criterion = " << cv );
>>
>>
>>
>> But there i have still some errors...This is the list :
>> 1>------ Rebuild All started: Project: ZERO_CHECK, Configuration: Debug
>> Win32 ------
>> 1>Deleting intermediate and output files for project 'ZERO_CHECK',
>> configuration 'Debug|Win32'
>> 1>Checking Build System
>> 1>CMake does not need to re-run because CMakeFiles/generate.stamp is
>> up-to-date.
>> 1>Build log was saved at
>> "file://c:\tk\N3CorrectionBin\ZERO_CHECK.dir\Debug\BuildLog.htm"
>> 1>ZERO_CHECK - 0 error(s), 0 warning(s)
>> 2>------ Rebuild All started: Project:
>> itkN3MRIBiasFieldCorrectionImageFilterTest, Configuration: Debug Win32
>> ------
>> 3>------ Rebuild All started: Project: ImageCompare, Configuration: Debug
>> Win32 ------
>> 3>Deleting intermediate and output files for project 'ImageCompare',
>> configuration 'Debug|Win32'
>> 2>Deleting intermediate and output files for project
>> 'itkN3MRIBiasFieldCorrectionImageFilterTest', configuration 'Debug|Win32'
>> 2>Building Custom Rule C:/tk/N3Correction/CMakeLists.txt
>> 3>Building Custom Rule C:/tk/N3Correction/CMakeLists.txt
>> 2>CMake does not need to re-run because CMakeFiles/generate.stamp is
>> up-to-date.
>> 2>Compiling...
>> 3>CMake is re-running because build system is out-of-date.
>> 3>-- Configuring done
>> 2>itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
>> 3>-- Generating done
>> 3>-- Build files have been written to: C:/tk/N3CorrectionBin
>> 3>Compiling...
>> 3>ImageCompare.cxx
>> 3>Compiling manifest to resources...
>> 3>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
>> 3>Copyright (C) Microsoft Corporation. All rights reserved.
>> 3>Linking...
>> 3>LINK : fatal error LNK1104: cannot open file 'ITKReview.lib'
>> 3>Build log was saved at
>> "file://c:\tk\N3CorrectionBin\ImageCompare.dir\Debug\BuildLog.htm"
>> 3>ImageCompare - 1 error(s), 0 warning(s)
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(211) :
>> error C3861: 'vnl_math_floor': identifier not found
>> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(166) :
>> while compiling class template member function
>> 'itk::SmartPointer<TObjectType>
>> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::SharpenImage(itk::SmartPointer<TObjectType>)'
>> 2> with
>> 2> [
>> 2> TObjectType=itk::Image<RealType,2>,
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(38) :
>> while compiling class template member function
>> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::N3MRIBiasFieldCorrectionImageFilter(void)'
>> 2> with
>> 2> [
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(109) :
>> see reference to class template instantiation
>> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>'
>> being compiled
>> 2> with
>> 2> [
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(217) :
>> see reference to function template instantiation 'int
>> itkN3MRIBiasFieldCorrectionImageFilterTest<2>(int,char *[])' being compiled
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(367) :
>> error C3861: 'vnl_math_floor': identifier not found
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(445) :
>> error C2039: 'SetDirection' : is not a member of
>> 'itk::BSplineScatteredDataPointSetToImageFilter<TInputPointSet,TOutputImage>'
>> 2> with
>> 2> [
>> 2>
>> TInputPointSet=itk::PointSet<itk::N3MRIBiasFieldCorrectionImageFilter<ImageType,MaskImageType,ImageType>::ScalarType,2>,
>> 2>
>> TOutputImage=itk::Image<itk::N3MRIBiasFieldCorrectionImageFilter<ImageType,MaskImageType,ImageType>::ScalarType,2>
>> 2> ]
>> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(391) :
>> while compiling class template member function
>> 'itk::SmartPointer<TObjectType>
>> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::SmoothField(itk::SmartPointer<TObjectType>)'
>> 2> with
>> 2> [
>> 2> TObjectType=itk::Image<RealType,2>,
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(211) :
>> error C3861: 'vnl_math_floor': identifier not found
>> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(166) :
>> while compiling class template member function
>> 'itk::SmartPointer<TObjectType>
>> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::SharpenImage(itk::SmartPointer<TObjectType>)'
>> 2> with
>> 2> [
>> 2> TObjectType=itk::Image<RealType,3>,
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(38) :
>> while compiling class template member function
>> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::N3MRIBiasFieldCorrectionImageFilter(void)'
>> 2> with
>> 2> [
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(109) :
>> see reference to class template instantiation
>> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>'
>> being compiled
>> 2> with
>> 2> [
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(220) :
>> see reference to function template instantiation 'int
>> itkN3MRIBiasFieldCorrectionImageFilterTest<3>(int,char *[])' being compiled
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(367) :
>> error C3861: 'vnl_math_floor': identifier not found
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(445) :
>> error C2039: 'SetDirection' : is not a member of
>> 'itk::BSplineScatteredDataPointSetToImageFilter<TInputPointSet,TOutputImage>'
>> 2> with
>> 2> [
>> 2>
>> TInputPointSet=itk::PointSet<itk::N3MRIBiasFieldCorrectionImageFilter<ImageType,MaskImageType,ImageType>::ScalarType,3>,
>> 2>
>> TOutputImage=itk::Image<itk::N3MRIBiasFieldCorrectionImageFilter<ImageType,MaskImageType,ImageType>::ScalarType,3>
>> 2> ]
>> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(391) :
>> while compiling class template member function
>> 'itk::SmartPointer<TObjectType>
>> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::SmoothField(itk::SmartPointer<TObjectType>)'
>> 2> with
>> 2> [
>> 2> TObjectType=itk::Image<RealType,3>,
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 4>------ Skipped Rebuild All: Project: NightlyMemoryCheck, Configuration:
>> Debug Win32 ------
>> 4>Project not selected to build for this solution configuration
>> 5>------ Skipped Rebuild All: Project: Nightly, Configuration: Debug Win32
>> ------
>> 5>Project not selected to build for this solution configuration
>> 6>------ Skipped Rebuild All: Project: RUN_TESTS, Configuration: Debug
>> Win32 ------
>> 6>Project not selected to build for this solution configuration
>> 7>------ Skipped Rebuild All: Project: Experimental, Configuration: Debug
>> Win32 ------
>> 7>Project not selected to build for this solution configuration
>> 8>------ Skipped Rebuild All: Project: Continuous, Configuration: Debug
>> Win32 ------
>> 8>Project not selected to build for this solution configuration
>> 2>Build log was saved at
>> "file://c:\tk\N3CorrectionBin\itkN3MRIBiasFieldCorrectionImageFilterTest.dir\Debug\BuildLog.htm"
>> 2>itkN3MRIBiasFieldCorrectionImageFilterTest - 6 error(s), 0 warning(s)
>> 9>------ Skipped Rebuild All: Project: ALL_BUILD, Configuration: Debug
>> Win32 ------
>> 9>Project not selected to build for this solution configuration
>> ========== Rebuild All: 1 succeeded, 2 failed, 6 skipped ==========
>>
>>
>>
>>
>>
>> Maybe i will wait until today late so that you can correct...because for
>> the moment i'm not an expert and i can correct only my simple code and not
>> codes so complex...
>> Thank you
>> Samuele
>>
>>
>> ________________________________
>> CC: insight-users at itk.org
>> From: ntustison at gmail.com
>> Subject: Re: [Insight-users] compilation problem
>> itkN3MRIBiasFieldCorrectionImageFilter(taken from insight journal)
>> Date: Fri, 23 Oct 2009 07:26:25 -0400
>> To: samuele_82 at hotmail.com
>>
>> Hi Samuele,
>> I need to fix the recent code revision---I made some changes such as
>> adding a progress reporter and I didn't realize until recently that there's
>> a bug. Anyway, you can wait until later today when I upload a corrected
>> version or you can find the line in the .txx file, in the function
>> GenerateData(), that reads something like
>> itkDebugMacro( "Iteration: " << iteration << ": Convergence threshold =
>> " << convergence )
>> and just delete it. That should correct the problem.
>> Nick
>>
>> On Oct 23, 2009, at 5:42 AM, Samuele Dietler wrote:
>>
>> Hello itk users,
>> i have a problem with the following library :
>> itkN3MRIBiasFieldCorrectionImageFilter(taken by insight journal). I compile
>> it in visual studio 9 with itk3.8. The first time that i compiled it i had a
>> problem with review option of itk, so i turned on review and i recompiled
>> itk. After i have recompiled itkN3MRIBiasFieldCorrectionImageFilter but this
>> time the following list of errors appear :
>>
>>
>> 1>------ Build started: Project: ImageCompare, Configuration: Debug Win32
>> ------
>> 2>------ Build started: Project:
>> itkN3MRIBiasFieldCorrectionImageFilterTest, Configuration: Debug Win32
>> ------
>> 2>Compiling...
>> 1>Compiling...
>> 1>ImageCompare.cxx
>> 2>itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(136) :
>> error C2065: 'iteration' : undeclared identifier
>> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(59) :
>> while compiling class template member function 'void
>> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::GenerateData(void)'
>> 2> with
>> 2> [
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(109) :
>> see reference to class template instantiation
>> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>'
>> being compiled
>> 2> with
>> 2> [
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(217) :
>> see reference to function template instantiation 'int
>> itkN3MRIBiasFieldCorrectionImageFilterTest<2>(int,char *[])' being compiled
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(136) :
>> error C2065: 'cv' : undeclared identifier
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(136) :
>> error C2065: 'iteration' : undeclared identifier
>> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(59) :
>> while compiling class template member function 'void
>> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::GenerateData(void)'
>> 2> with
>> 2> [
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(109) :
>> see reference to class template instantiation
>> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>'
>> being compiled
>> 2> with
>> 2> [
>> 2> TInputImage=ImageType,
>> 2> TMaskImage=MaskImageType,
>> 2> TOutputImage=ImageType
>> 2> ]
>> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(220) :
>> see reference to function template instantiation 'int
>> itkN3MRIBiasFieldCorrectionImageFilterTest<3>(int,char *[])' being compiled
>> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(136) :
>> error C2065: 'cv' : undeclared identifier
>> 2>Build log was saved at
>> "file://c:\tk\N3CorrectionBin\itkN3MRIBiasFieldCorrectionImageFilterTest.dir\Debug\BuildLog.htm"
>> 2>itkN3MRIBiasFieldCorrectionImageFilterTest - 4 error(s), 0 warning(s)
>> 1>Compiling manifest to resources...
>> 1>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
>> 1>Copyright (C) Microsoft Corporation. All rights reserved.
>> 1>Linking...
>> 1>LINK : fatal error LNK1104: cannot open file 'ITKReview.lib'
>> 1>Build log was saved at
>> "file://c:\tk\N3CorrectionBin\ImageCompare.dir\Debug\BuildLog.htm"
>> 1>ImageCompare - 1 error(s), 0 warning(s)
>> ========== Build: 0 succeeded, 2 failed, 2 up-to-date, 0 skipped
>> ==========
>>
>>
>> Does anyone know hot to solve the problem??
>>
>>
>> Thank you, bests
>> Samuele
>>
>>
>>
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>
>
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>
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