ITK  4.9.0
Insight Segmentation and Registration Toolkit
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itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField > Class Template Reference

#include <itkPhysicsBasedNonRigidRegistrationMethod.h>

+ Inheritance diagram for itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >:
+ Collaboration diagram for itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >:

Detailed Description

template<typename TFixedImage, typename TMovingImage, typename TMaskImage, typename TMesh, typename TDeformationField>
class itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >

Perform a non-rigid registration of two 3D images using a set of feature points, block matching and linear elastic model.

PhysicsBasedNonRigidRegistrationMethod takes a fixed image, a moving image with an optional mask and a mesh as inputs and generates a dense deformation field image as an output.

This filter is intended to be used for driving the process of Physics- Based Non-Rigid Registration. It computes feature points from the moving image, then computes displacements of the feature points in the fixed image via block-matching, then computes deformation field of a whole image using linear elastic model[ M. Bierling, Displacement estimation by hierarchical block matching, Proc. SPIE Vis. Comm. and Image Proc., vol. 1001, pp. 942-951, 1988. ].

The filter is templated over fixed image, moving image, mask, mesh and deformation field image.

Author
Andriy Kot, Center for Real-Time Computing, Old Dominion University, Norfolk, VA

Definition at line 61 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

Public Types

typedef
BlockMatchingImageFilter
< FixedImageType,
MovingImageType
BlockMatchingFilterType
 
typedef SmartPointer< const SelfConstPointer
 
typedef TDeformationField DeformationFieldType
 
typedef
MaskFeaturePointSelectionFilter
< MovingImageType,
MaskImageType
FeatureSelectionFilterType
 
typedef
FEMScatteredDataPointSetToImageFilter
< typename
BlockMatchingFilterType::DisplacementsType,
MeshType, DeformationFieldType,
typename
BlockMatchingFilterType::SimilaritiesType,
typename
FeatureSelectionFilterType::FeaturePointsType
FEMFilterType
 
typedef TFixedImage FixedImageType
 
typedef Index< ImageDimensionImageIndexType
 
typedef ImageRegion
< ImageDimension
ImageRegionType
 
typedef Size< ImageDimensionImageSizeType
 
typedef TMaskImage MaskImageType
 
typedef TMesh MeshType
 
typedef TMovingImage MovingImageType
 
typedef SmartPointer< SelfPointer
 
typedef
PhysicsBasedNonRigidRegistrationMethod 
Self
 
typedef ImageToImageFilter
< TMovingImage,
TDeformationField > 
Superclass
 
- Public Types inherited from itk::ImageToImageFilter< TMovingImage, TDeformationField >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TMovingImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource
< TDeformationField > 
Superclass
 
- Public Types inherited from itk::ImageSource< TDeformationField >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TDeformationField OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
virtual const FEMFilterTypeGetFEMFilter () const
 
virtual const char * GetNameOfClass () const
 
 typedef (Concept::SameDimension< TFixedImage::ImageDimension, 3u >) FixedImageDimensionShouldBe3
 
 typedef (Concept::SameDimension< TMovingImage::ImageDimension, 3u >) MovingImageDimensionShouldBe3
 
 typedef (Concept::SameDimension< TMaskImage::ImageDimension, 3u >) MaskImageDimensionShouldBe3
 
 typedef (Concept::SameDimension< TMesh::PointType::PointDimension, 3u >) MeshDimensionShouldBe3
 
 typedef (Concept::SameDimension< TDeformationField::ImageDimension, 3u >) DeformationFieldImageDimensionShouldBe3
 
virtual void SetSelectFraction (double _arg)
 
virtual double GetSelectFraction () const
 
virtual void SetNonConnectivity (unsigned int _arg)
 
virtual unsigned int GetNonConnectivity () const
 
virtual void SetBlockRadius (ImageSizeType _arg)
 
virtual const ImageSizeTypeGetBlockRadius () const
 
virtual void SetSearchRadius (ImageSizeType _arg)
 
virtual const ImageSizeTypeGetSearchRadius () const
 
virtual void SetApproximationSteps (unsigned int _arg)
 
virtual unsigned int GetApproximationSteps ()
 
virtual void SetOutlierRejectionSteps (unsigned int _arg)
 
virtual unsigned int GetOutlierRejectionSteps ()
 
virtual void SetFixedImage (const FixedImageType *input)
 
virtual const FixedImageTypeGetFixedImage () const
 
virtual void SetMovingImage (const MovingImageType *input)
 
virtual const MovingImageTypeGetMovingImage () const
 
virtual void SetMaskImage (const MaskImageType *input)
 
virtual const MaskImageTypeGetMaskImage () const
 
virtual void SetMesh (const MeshType *input)
 
virtual const MeshTypeGetMesh () const
 
- Public Member Functions inherited from itk::ImageToImageFilter< TMovingImage, TDeformationField >
const InputImageTypeGetInput () const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput () override
 
virtual void PopFrontInput () override
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TMovingImage *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TDeformationField >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *output)
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) override
 
virtual void UnRegister () const noexceptoverride
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static const unsigned int ImageDimension = FixedImageType::ImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TMovingImage, TDeformationField >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TDeformationField >
static const unsigned int OutputImageDimension
 

Protected Member Functions

virtual void GenerateData () override
 
 PhysicsBasedNonRigidRegistrationMethod ()
 
virtual void PrintSelf (std::ostream &os, Indent indent) const override
 
virtual ~PhysicsBasedNonRigidRegistrationMethod ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TMovingImage, TDeformationField >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
virtual void GenerateInputRequestedRegion () override
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation () override
 
 ~ImageToImageFilter ()
 
void PushBackInput (const DataObject *input) override
 
void PushFrontInput (const DataObject *input) override
 
- Protected Member Functions inherited from itk::ImageSource< TDeformationField >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void BeforeThreadedGenerateData ()
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

void operator= (const PhysicsBasedNonRigidRegistrationMethod &) ITK_DELETE_FUNCTION
 
 PhysicsBasedNonRigidRegistrationMethod (const PhysicsBasedNonRigidRegistrationMethod &) ITK_DELETE_FUNCTION
 

Private Attributes

unsigned int m_ApproximationSteps
 
BlockMatchingFilterType::Pointer m_BlockMatchingFilter
 
ImageSizeType m_BlockRadius
 
FeatureSelectionFilterType::Pointer m_FeatureSelectionFilter
 
FEMFilterType::Pointer m_FEMFilter
 
unsigned int m_NonConnectivity
 
unsigned int m_OutlierRejectionSteps
 
ImageSizeType m_SearchRadius
 
double m_SelectFraction
 

Additional Inherited Members

- Protected Types inherited from itk::ImageToImageFilter< TMovingImage, TDeformationField >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Static Protected Member Functions inherited from itk::ImageSource< TDeformationField >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
AtomicInt< int > m_ReferenceCount
 

Member Typedef Documentation

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef BlockMatchingImageFilter< FixedImageType, MovingImageType > itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::BlockMatchingFilterType

Definition at line 90 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef SmartPointer<const Self> itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::ConstPointer

Definition at line 67 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef TDeformationField itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::DeformationFieldType

Definition at line 79 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef MaskFeaturePointSelectionFilter< MovingImageType, MaskImageType > itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::FeatureSelectionFilterType

Typedefs for the components filters.

Definition at line 89 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef FEMScatteredDataPointSetToImageFilter< typename BlockMatchingFilterType::DisplacementsType, MeshType, DeformationFieldType, typename BlockMatchingFilterType::SimilaritiesType, typename FeatureSelectionFilterType::FeaturePointsType > itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::FEMFilterType

Definition at line 97 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef TFixedImage itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::FixedImageType

Definition at line 76 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef Index< ImageDimension > itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::ImageIndexType

Definition at line 86 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef ImageRegion< ImageDimension > itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::ImageRegionType

Not input specific typedefs

Definition at line 84 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef Size< ImageDimension > itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::ImageSizeType

Definition at line 85 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef TMaskImage itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::MaskImageType

Definition at line 77 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef TMesh itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::MeshType

Definition at line 78 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef TMovingImage itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::MovingImageType

Definition at line 73 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef SmartPointer<Self> itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::Pointer

Definition at line 66 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef PhysicsBasedNonRigidRegistrationMethod itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::Self

Definition at line 64 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
typedef ImageToImageFilter<TMovingImage, TDeformationField> itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::Superclass

Definition at line 65 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

Constructor & Destructor Documentation

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::PhysicsBasedNonRigidRegistrationMethod ( )
protected
template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::~PhysicsBasedNonRigidRegistrationMethod ( )
protectedvirtual
template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::PhysicsBasedNonRigidRegistrationMethod ( const PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField > &  )
private

Member Function Documentation

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual::itk::LightObject::Pointer itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GenerateData ( void  )
overrideprotectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See Also
ThreadedGenerateData()

Reimplemented from itk::ImageSource< TDeformationField >.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual unsigned int itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetApproximationSteps ( )
virtual

set/get number of approximation steps

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual const ImageSizeType& itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetBlockRadius ( ) const
virtual

set/get half size

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual const FEMFilterType* itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetFEMFilter ( ) const
virtual

get FEMFilter

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual const FixedImageType* itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetFixedImage ( ) const
virtual

set/get fixed image

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual const MaskImageType* itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetMaskImage ( ) const
virtual

set/get moving image

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual const MeshType* itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetMesh ( ) const
virtual

set/get moving image

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual const MovingImageType* itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetMovingImage ( ) const
virtual

set/get moving image

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual const char* itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods)

Reimplemented from itk::ImageToImageFilter< TMovingImage, TDeformationField >.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual unsigned int itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetNonConnectivity ( ) const
virtual

set/get non-connectivity

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual unsigned int itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetOutlierRejectionSteps ( )
virtual

set/get number of outlier rejection steps

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual const ImageSizeType& itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetSearchRadius ( ) const
virtual

set/get half window

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual double itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::GetSelectFraction ( ) const
virtual

set fraction of eligible points to select

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
static Pointer itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::New ( )
static

Method for creation through the object factory.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::operator= ( const PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField > &  )
private
template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TMovingImage, TDeformationField >.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetApproximationSteps ( unsigned int  _arg)
virtual

set/get number of approximation steps

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetBlockRadius ( ImageSizeType  _arg)
virtual

set/get half size

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetFixedImage ( const FixedImageType input)
virtual

set/get fixed image

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetMaskImage ( const MaskImageType input)
virtual

set/get moving image

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetMesh ( const MeshType input)
virtual

set/get moving image

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetMovingImage ( const MovingImageType input)
virtual

set/get moving image

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetNonConnectivity ( unsigned int  _arg)
virtual

set/get non-connectivity

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetOutlierRejectionSteps ( unsigned int  _arg)
virtual

set/get number of outlier rejection steps

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetSearchRadius ( ImageSizeType  _arg)
virtual

set/get half window

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
virtual void itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::SetSelectFraction ( double  _arg)
virtual

set fraction of eligible points to select

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::typedef ( Concept::SameDimension< TFixedImage::ImageDimension, 3u >  )

This class requires FixedImageDimensionShouldBe3 in the form of ( Concept::SameDimension< TFixedImage::ImageDimension, 3u > )

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::typedef ( Concept::SameDimension< TMovingImage::ImageDimension, 3u >  )

This class requires MovingImageDimensionShouldBe3 in the form of ( Concept::SameDimension< TMovingImage::ImageDimension, 3u > )

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::typedef ( Concept::SameDimension< TMaskImage::ImageDimension, 3u >  )

This class requires MaskImageDimensionShouldBe3 in the form of ( Concept::SameDimension< TMaskImage::ImageDimension, 3u > )

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::typedef ( Concept::SameDimension< TMesh::PointType::PointDimension, 3u >  )

This class requires MeshDimensionShouldBe3 in the form of ( Concept::SameDimension< TMesh::PointType::PointDimension, 3u > )

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::typedef ( Concept::SameDimension< TDeformationField::ImageDimension, 3u >  )

This class requires DeformationFieldImageDimensionShouldBe3 in the form of ( Concept::SameDimension< TDeformationField::ImageDimension, 3u > )

Member Data Documentation

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
const unsigned int itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::ImageDimension = FixedImageType::ImageDimension
static

Definition at line 81 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
unsigned int itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::m_ApproximationSteps
private

Definition at line 185 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
BlockMatchingFilterType::Pointer itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::m_BlockMatchingFilter
private

Definition at line 189 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
ImageSizeType itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::m_BlockRadius
private

Definition at line 183 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
FeatureSelectionFilterType::Pointer itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::m_FeatureSelectionFilter
private

Definition at line 188 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
FEMFilterType::Pointer itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::m_FEMFilter
private

Definition at line 190 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
unsigned int itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::m_NonConnectivity
private

Definition at line 182 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
unsigned int itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::m_OutlierRejectionSteps
private

Definition at line 186 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
ImageSizeType itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::m_SearchRadius
private

Definition at line 184 of file itkPhysicsBasedNonRigidRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TMaskImage , typename TMesh , typename TDeformationField >
double itk::fem::PhysicsBasedNonRigidRegistrationMethod< TFixedImage, TMovingImage, TMaskImage, TMesh, TDeformationField >::m_SelectFraction
private

Definition at line 181 of file itkPhysicsBasedNonRigidRegistrationMethod.h.


The documentation for this class was generated from the following file: