ITK  4.9.0
Insight Segmentation and Registration Toolkit
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itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer > Class Template Reference

#include <itkScalarImageToRunLengthMatrixFilter.h>

+ Inheritance diagram for itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >:
+ Collaboration diagram for itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >:

Detailed Description

template<typename TImageType, typename THistogramFrequencyContainer = DenseFrequencyContainer2>
class itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >

This class computes a run length matrix (histogram) from a given image and a mask image if provided. Run length matrces are used for image texture description.

This filters creates a grey-level run length matrix from a N-D scalar image. This is another possible texture description. See the following references. M. M. Galloway. Texture analysis using gray level run lengths. Computer Graphics and Image Processing, 4:172-179, 1975.

A. Chu, C. M. Sehgal, and J. F. Greenleaf. Use of gray value distribution of run lengths for texture analysis. Pattern Recognition Letters, 11:415-420, 1990.

B. R. Dasarathy and E. B. Holder. Image characterizations based on joint gray-level run-length distributions. Pattern Recognition Letters, 12:490-502, 1991.

The basic idea is as follows: Given an image and an offset (e.g. (1, -1) for a 2-d image), each element in the joint histogram describes the frequency for a particular distance/ intensity pair within a given image. This distance/intensity pair can be described as follows: we start at a given voxel which has some intensity. We then "jump" to neighboring pixels in increments provided by the offset(s) as long as the pixel to which we are jumping is within the same intensity bin as the original voxel. The distance component is given by the distance from the original to the final voxel satisfying our jumping criteria.

The offset (or offsets) along which the co-occurences are calculated can be set by the user. Traditionally, only one offset is used per histogram, and offset components in the range [-1, 1] are used. For rotation-invariant features averages of features computed over several histograms with different offsets are generally used, instead of computing features from one histogram create with several offsets. Additionally, instead of using offsets of two or more pixels in any direction, multi-resolution techniques (e.g. image pyramids) are generally used to deal with texture at different spatial resolutions.

This class calculates a 2-d histogram of all the intensity/distance pairs in the given image's requested region, for a given set of offsets. That is, if a given offset falls outside of the requested region (or outside the mask) at a particular point, that distance/intensity pair will not be added to the matrix.

The number of histogram bins on each axis can be set (defaults to 256). Also, by default the histogram min and max corresponds to the largest and smallest possible pixel value of that pixel type. To customize the histogram bounds for a given image, the max and min pixel values that will be placed in the histogram can be set manually. NB: The min and max are INCLUSIVE.

Further, the type of histogram frequency container used is an optional template parameter. By default, a dense container is used, but for images with little texture or in cases where the user wants more histogram bins, a sparse container can be used for the histogram instead.

WARNING: This probably won't work for pixels of double or long-double type unless you set the histogram min and max manually. This is because the largest histogram bin by default has max value of the largest possible pixel value plus 1. For double and long-double types, whose "RealType" as defined by the NumericTraits class is the same, and thus cannot hold any larger values, this would cause a float overflow.

IJ article: http://hdl.handle.net/1926/1374

See Also
ScalarImageToRunLengthFeaturesFilter
ScalarImageToRunLengthMatrixFilter
HistogramToRunLengthFeaturesFilter
Author
: Nick Tustison

Definition at line 106 of file itkScalarImageToRunLengthMatrixFilter.h.

Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef HistogramType::ConstPointer HistogramConstPointer
 
typedef HistogramType::Pointer HistogramPointer
 
typedef Histogram
< MeasurementType,
THistogramFrequencyContainer > 
HistogramType
 
typedef ImageType::ConstPointer ImageConstPointer
 
typedef ImageType::Pointer ImagePointer
 
typedef TImageType ImageType
 
typedef ImageType::IndexType IndexType
 
typedef NumericTraits
< PixelType >::RealType 
MeasurementType
 
typedef
HistogramType::MeasurementVectorType 
MeasurementVectorType
 
typedef ImageType::OffsetType OffsetType
 
typedef VectorContainer
< unsigned char, OffsetType
OffsetVector
 
typedef OffsetVector::Pointer OffsetVectorPointer
 
typedef ImageType::PixelType PixelType
 
typedef SmartPointer< SelfPointer
 
typedef ImageType::PointType PointType
 
typedef ImageType::SizeType RadiusType
 
typedef NumericTraits
< PixelType >::RealType 
RealType
 
typedef ImageType::RegionType RegionType
 
typedef
ScalarImageToRunLengthMatrixFilter 
Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
const ImageTypeGetInput () const
 
const ImageTypeGetMaskImage () const
 
virtual PixelType GetMax () const
 
virtual RealType GetMaxDistance () const
 
virtual PixelType GetMin () const
 
virtual RealType GetMinDistance () const
 
virtual OffsetVectorGetModifiableOffsets ()
 
virtual const char * GetNameOfClass () const
 
virtual unsigned int GetNumberOfBinsPerAxis () const
 
virtual const OffsetVectorGetOffsets () const
 
const HistogramTypeGetOutput () const
 
void SetDistanceValueMinMax (RealType min, RealType max)
 
void SetInput (const ImageType *image)
 
void SetMaskImage (const ImageType *image)
 
virtual void SetNumberOfBinsPerAxis (unsigned int _arg)
 
void SetOffset (const OffsetType offset)
 
virtual void SetOffsets (OffsetVector *_arg)
 
void SetPixelValueMinMax (PixelType min, PixelType max)
 
virtual void SetInsidePixelValue (PixelType _arg)
 
virtual PixelType GetInsidePixelValue () const
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) override
 
virtual void UnRegister () const noexceptoverride
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static const unsigned int DefaultBinsPerAxis = 256
 
static const unsigned int ImageDimension = TImageType::ImageDimension
 

Protected Types

typedef DataObject::Pointer DataObjectPointer
 
typedef
ProcessObject::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 

Protected Member Functions

virtual void GenerateData () override
 
virtual DataObjectPointer MakeOutput (DataObjectPointerArraySizeType idx) override
 
void NormalizeOffsetDirection (OffsetType &offset)
 
virtual void PrintSelf (std::ostream &os, Indent indent) const override
 
 ScalarImageToRunLengthMatrixFilter ()
 
virtual ~ScalarImageToRunLengthMatrixFilter ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateInputRequestedRegion ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PushFrontInput (const DataObject *input)
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyInputInformation ()
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Attributes

PixelType m_InsidePixelValue
 
MeasurementVectorType m_LowerBound
 
PixelType m_Max
 
RealType m_MaxDistance
 
PixelType m_Min
 
RealType m_MinDistance
 
unsigned int m_NumberOfBinsPerAxis
 
OffsetVectorPointer m_Offsets
 
MeasurementVectorType m_UpperBound
 

Additional Inherited Members

- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
AtomicInt< int > m_ReferenceCount
 

Member Typedef Documentation

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef SmartPointer<const Self> itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::ConstPointer

Definition at line 113 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef DataObject::Pointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::DataObjectPointer
protected

Standard itk::ProcessObject subclass method.

Definition at line 240 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ProcessObject::DataObjectPointerArraySizeType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::DataObjectPointerArraySizeType
protected

Definition at line 242 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef HistogramType::ConstPointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::HistogramConstPointer

Definition at line 139 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef HistogramType::Pointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::HistogramPointer

Definition at line 138 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef Histogram<MeasurementType, THistogramFrequencyContainer> itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::HistogramType

Definition at line 137 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ImageType::ConstPointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::ImageConstPointer

Definition at line 123 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ImageType::Pointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::ImagePointer

Definition at line 122 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef TImageType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::ImageType

Definition at line 119 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ImageType::IndexType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::IndexType

Definition at line 125 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef NumericTraits<PixelType>::RealType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::MeasurementType

Definition at line 133 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef HistogramType::MeasurementVectorType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::MeasurementVectorType

Definition at line 140 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ImageType::OffsetType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::OffsetType

Definition at line 128 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef VectorContainer<unsigned char, OffsetType> itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::OffsetVector

Definition at line 129 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef OffsetVector::Pointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::OffsetVectorPointer

Definition at line 130 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ImageType::PixelType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::PixelType

Definition at line 124 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef SmartPointer<Self> itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::Pointer

Definition at line 112 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ImageType::PointType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::PointType

Definition at line 131 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ImageType::SizeType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::RadiusType

Definition at line 127 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef NumericTraits<PixelType>::RealType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::RealType

Definition at line 134 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ImageType::RegionType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::RegionType

Definition at line 126 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ScalarImageToRunLengthMatrixFilter itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::Self

Standard typedefs

Definition at line 110 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
typedef ProcessObject itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::Superclass

Definition at line 111 of file itkScalarImageToRunLengthMatrixFilter.h.

Constructor & Destructor Documentation

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::ScalarImageToRunLengthMatrixFilter ( )
protected
template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::~ScalarImageToRunLengthMatrixFilter ( )
inlineprotectedvirtual

Definition at line 236 of file itkScalarImageToRunLengthMatrixFilter.h.

Member Function Documentation

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual::itk::LightObject::Pointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GenerateData ( )
overrideprotectedvirtual

This method causes the filter to generate its output.

Reimplemented from itk::ProcessObject.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
const ImageType* itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetInput ( ) const

Method to get the input image

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual PixelType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetInsidePixelValue ( ) const
virtual

Set the pixel value of the mask that should be considered "inside" the object. Defaults to 1.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
const ImageType* itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetMaskImage ( ) const

Method to get the mask image

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual PixelType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetMax ( ) const
virtual

Get the max pixel value defining one dimension of the joint histogram.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual RealType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetMaxDistance ( ) const
virtual

Get the max distance value defining one dimension of the joint histogram.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual PixelType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetMin ( ) const
virtual

Get the min pixel value defining one dimension of the joint histogram.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual RealType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetMinDistance ( ) const
virtual

Get the min distance value defining one dimension of the joint histogram.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual OffsetVector* itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetModifiableOffsets ( )
virtual

Get the current offset(s).

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual const char* itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ProcessObject.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual unsigned int itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetNumberOfBinsPerAxis ( ) const
virtual

Get number of histogram bins along each axis

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual const OffsetVector* itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetOffsets ( ) const
virtual
template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
const HistogramType* itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::GetOutput ( ) const

method to get the Histogram

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual DataObjectPointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::MakeOutput ( DataObjectPointerArraySizeType  idx)
overrideprotectedvirtual

Make a DataObject of the correct type to used as the specified output.

Every ProcessObject subclass must be able to create a DataObject that can be used as a specified output. This method is automatically called when DataObject::DisconnectPipeline() is called. DataObject::DisconnectPipeline, disconnects a data object from being an output of its current source. When the data object is disconnected, the ProcessObject needs to construct a replacement output data object so that the ProcessObject is in a valid state. So DataObject::DisconnectPipeline eventually calls ProcessObject::MakeOutput. Note that MakeOutput always returns a itkSmartPointer to a DataObject. ImageSource and MeshSource override this method to create the correct type of image and mesh respectively. If a filter has multiple outputs of different types, then that filter must provide an implementation of MakeOutput().

Reimplemented from itk::ProcessObject.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
static Pointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::New ( )
static

standard New() method support

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::NormalizeOffsetDirection ( OffsetType offset)
protected

Normalize the direction of the offset before it is applied. The last non-zero dimension of the offest has to be positive in order to match to scanning order of the iterator. Only the sign is changed. For example, the input offset (-1, 0) will be normalized as (1, 0).

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ProcessObject.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::SetDistanceValueMinMax ( RealType  min,
RealType  max 
)

Set the min and max (inclusive) pixel value that will be used in generating the histogram.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::SetInput ( const ImageType image)
template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::SetInsidePixelValue ( PixelType  _arg)
virtual

Set the pixel value of the mask that should be considered "inside" the object. Defaults to 1.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::SetMaskImage ( const ImageType image)

Method to set the mask image

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::SetNumberOfBinsPerAxis ( unsigned int  _arg)
virtual

Set number of histogram bins along each axis

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::SetOffset ( const OffsetType  offset)

Set offset over which the intensity/distance pairs will be computed. Invoking this function clears the previous offset(s). Note: for each individual offset, the rightmost non-zero offset element must be positive. For example, in the offset list of a 2D image, (1, 0) means the offset along x-axis. (1, 0) has to be set instead of (-1, 0). This is required from the iterating order of pixel iterator.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
virtual void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::SetOffsets ( OffsetVector _arg)
virtual

Set the offsets over which the intensity/distance pairs will be computed. Invoking this function clears the previous offsets. Note: for each individual offset in the OffsetVector, the rightmost non-zero offset element must be positive. For example, in the offset list of a 2D image, (1, 0) means the offset along x-axis. (1, 0) has to be set instead of (-1, 0). This is required from the iterating order of pixel iterator.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
void itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::SetPixelValueMinMax ( PixelType  min,
PixelType  max 
)

Set the min and max (inclusive) pixel value that will be used in generating the histogram.

Member Data Documentation

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
const unsigned int itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::DefaultBinsPerAxis = 256
static

Specify the default number of bins per axis

Definition at line 147 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
const unsigned int itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::ImageDimension = TImageType::ImageDimension
static

ImageDimension constants

Definition at line 144 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
PixelType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::m_InsidePixelValue
private

Definition at line 265 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
MeasurementVectorType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::m_LowerBound
private

Definition at line 267 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
PixelType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::m_Max
private

Definition at line 262 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
RealType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::m_MaxDistance
private

Definition at line 264 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
PixelType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::m_Min
private

Definition at line 261 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
RealType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::m_MinDistance
private

Definition at line 263 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
unsigned int itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::m_NumberOfBinsPerAxis
private

Definition at line 260 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
OffsetVectorPointer itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::m_Offsets
private

Definition at line 269 of file itkScalarImageToRunLengthMatrixFilter.h.

template<typename TImageType , typename THistogramFrequencyContainer = DenseFrequencyContainer2>
MeasurementVectorType itk::Statistics::ScalarImageToRunLengthMatrixFilter< TImageType, THistogramFrequencyContainer >::m_UpperBound
private

Definition at line 268 of file itkScalarImageToRunLengthMatrixFilter.h.


The documentation for this class was generated from the following file: