ITK  4.9.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Private Member Functions | Private Attributes | List of all members
itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage > Class Template Reference

#include <itkLabelMapOverlayImageFilter.h>

+ Inheritance diagram for itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >:
+ Collaboration diagram for itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >:

Detailed Description

template<typename TLabelMap, typename TFeatureImage, typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
class itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >

Apply a colormap to a label map and superimpose it on an image.

Apply a colormap to a label map and put it on top of the feature image. The feature image is typically the image from which the labeling was produced. Use the SetInput function to set the LabelMap, and the SetFeatureImage function to set the feature image.

The set of colors is a good selection of distinct colors. The opacity of the label map can be defined by the user. A background label produce a gray pixel with the same intensity than the input one.

Author
Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: http://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176

See Also
LabelMapToBinaryImageFilter, LabelMapToLabelImageFilter
Examples:
SphinxExamples/src/Filtering/ImageFusion/OverlayLabelMapOnTopOfAnImage/Code.cxx, and WikiExamples/ImageProcessing/LabelMapOverlayImageFilter.cxx.

Definition at line 52 of file itkLabelMapOverlayImageFilter.h.

Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef
FeatureImageType::ConstPointer 
FeatureImageConstPointer
 
typedef FeatureImageType::PixelType FeatureImagePixelType
 
typedef FeatureImageType::Pointer FeatureImagePointer
 
typedef
FeatureImageType::RegionType 
FeatureImageRegionType
 
typedef TFeatureImage FeatureImageType
 
typedef
Functor::LabelOverlayFunctor
< FeatureImagePixelType,
LabelMapPixelType,
OutputImagePixelType
FunctorType
 
typedef OutputImageType::IndexType IndexType
 
typedef LabelMapType::ConstPointer LabelMapConstPointer
 
typedef LabelMapType::PixelType LabelMapPixelType
 
typedef LabelMapType::Pointer LabelMapPointer
 
typedef LabelMapType::RegionType LabelMapRegionType
 
typedef TLabelMap LabelMapType
 
typedef
LabelMapType::LabelObjectType 
LabelObjectType
 
typedef LabelObjectType::LabelType LabelType
 
typedef LabelObjectType::LengthType LengthType
 
typedef
OutputImageType::ConstPointer 
OutputImageConstPointer
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef OutputImageType::RegionType RegionType
 
typedef LabelMapOverlayImageFilter Self
 
typedef OutputImageType::SizeType SizeType
 
typedef LabelMapFilter
< TLabelMap, TOutputImage > 
Superclass
 
- Public Types inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::InputImageConstPointer 
InputImageConstPointer
 
typedef
Superclass::InputImagePixelType 
InputImagePixelType
 
typedef
Superclass::InputImagePointer 
InputImagePointer
 
typedef
Superclass::InputImageRegionType 
InputImageRegionType
 
typedef Superclass::InputImageType InputImageType
 
typedef
InputImageType::LabelObjectType 
LabelObjectType
 
typedef
OutputImageType::ConstPointer 
OutputImageConstPointer
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef LabelMapFilter Self
 
typedef ImageToImageFilter
< TLabelMap, TOutputImage > 
Superclass
 
- Public Types inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TLabelMap InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource< TOutputImage > Superclass
 
- Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
const FeatureImageTypeGetFeatureImage ()
 
virtual const char * GetNameOfClass () const
 
void SetFeatureImage (const TFeatureImage *input)
 
void SetInput1 (const TLabelMap *input)
 
void SetInput2 (const TFeatureImage *input)
 
virtual void SetOpacity (double _arg)
 
virtual const double & GetOpacity () const
 
virtual void SetFunctor (const FunctorType &functor)
 
FunctorTypeGetFunctor ()
 
const FunctorTypeGetFunctor () const
 
- Public Member Functions inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
virtual ::itk::LightObject::Pointer CreateAnother () const
 
void EnlargeOutputRequestedRegion (DataObject *) override
 
void GenerateInputRequestedRegion () override
 
- Public Member Functions inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
const InputImageTypeGetInput () const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput () override
 
virtual void PopFrontInput () override
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TLabelMap *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *output)
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) override
 
virtual void UnRegister () const noexceptoverride
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static const unsigned int InputImageDimension = TLabelMap::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
static const unsigned int ImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 

Protected Member Functions

virtual void BeforeThreadedGenerateData () override
 
void EnlargeOutputRequestedRegion (DataObject *) override
 
void GenerateInputRequestedRegion () override
 
virtual void GenerateOutputInformation () override
 
 LabelMapOverlayImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) override
 
virtual void ThreadedProcessLabelObject (LabelObjectType *labelObject) override
 
 ~LabelMapOverlayImageFilter ()
 
- Protected Member Functions inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
virtual void AfterThreadedGenerateData () override
 
virtual InputImageTypeGetLabelMap ()
 
 LabelMapFilter ()
 
virtual void ThreadedProcessLabelObject (LabelObjectType *labelObject)
 
 ~LabelMapFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation () override
 
 ~ImageToImageFilter ()
 
void PushBackInput (const DataObject *input) override
 
void PushFrontInput (const DataObject *input) override
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AllocateOutputs ()
 
virtual void GenerateData () override
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

 LabelMapOverlayImageFilter (const Self &) ITK_DELETE_FUNCTION
 
void operator= (const Self &) ITK_DELETE_FUNCTION
 

Private Attributes

Barrier::Pointer m_Barrier
 
FunctorType m_Functor
 
double m_Opacity
 

Additional Inherited Members

- Protected Types inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
FastMutexLock::Pointer m_LabelObjectContainerLock
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
AtomicInt< int > m_ReferenceCount
 

Member Typedef Documentation

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef SmartPointer<const Self> itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::ConstPointer

Definition at line 60 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef FeatureImageType::ConstPointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImageConstPointer

Definition at line 74 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef FeatureImageType::PixelType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImagePixelType

Definition at line 76 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef FeatureImageType::Pointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImagePointer

Definition at line 73 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef FeatureImageType::RegionType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImageRegionType

Definition at line 75 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef TFeatureImage itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImageType

Definition at line 72 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef Functor::LabelOverlayFunctor<FeatureImagePixelType, LabelMapPixelType, OutputImagePixelType> itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FunctorType

Definition at line 87 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef OutputImageType::IndexType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::IndexType

Definition at line 83 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef LabelMapType::ConstPointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapConstPointer

Definition at line 65 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef LabelMapType::PixelType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapPixelType

Definition at line 67 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef LabelMapType::Pointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapPointer

Definition at line 64 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef LabelMapType::RegionType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapRegionType

Definition at line 66 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef TLabelMap itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapType

Some convenient typedefs.

Definition at line 63 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef LabelMapType::LabelObjectType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelObjectType

Definition at line 68 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef LabelObjectType::LabelType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelType

Definition at line 69 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef LabelObjectType::LengthType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LengthType

Definition at line 70 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef OutputImageType::ConstPointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageConstPointer

Definition at line 80 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef OutputImageType::PixelType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImagePixelType

Definition at line 82 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef OutputImageType::Pointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImagePointer

Definition at line 79 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef OutputImageType::RegionType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageRegionType

Definition at line 81 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef TOutputImage itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageType

Definition at line 78 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef SmartPointer<Self> itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::Pointer

Definition at line 59 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef OutputImageType::RegionType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::RegionType

Definition at line 85 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef LabelMapOverlayImageFilter itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 57 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef OutputImageType::SizeType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SizeType

Definition at line 84 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
typedef LabelMapFilter<TLabelMap, TOutputImage> itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::Superclass

Definition at line 58 of file itkLabelMapOverlayImageFilter.h.

Constructor & Destructor Documentation

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapOverlayImageFilter ( )
protected
template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::~LabelMapOverlayImageFilter ( )
inlineprotected

Definition at line 154 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapOverlayImageFilter ( const Self )
private

Member Function Documentation

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
virtual void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::BeforeThreadedGenerateData ( void  )
overrideprotectedvirtual

If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::LabelMapFilter< TLabelMap, TOutputImage >.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
virtual::itk::LightObject::Pointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::EnlargeOutputRequestedRegion ( DataObject )
overrideprotectedvirtual

LabelMapOverlayImageFilter will produce the entire output.

Reimplemented from itk::ProcessObject.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GenerateInputRequestedRegion ( )
overrideprotectedvirtual

LabelMapOverlayImageFilter needs the entire input be available. Thus, it needs to provide an implementation of GenerateInputRequestedRegion().

Reimplemented from itk::ImageToImageFilter< TLabelMap, TOutputImage >.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
virtual void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GenerateOutputInformation ( )
overrideprotectedvirtual

Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented from itk::ProcessObject.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
const FeatureImageType* itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetFeatureImage ( )
inline

Get the feature image

Definition at line 113 of file itkLabelMapOverlayImageFilter.h.

References itk::ProcessObject::GetInput().

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
FunctorType& itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetFunctor ( void  )
inline

Set/Get the overlay functor - defaults to a reasonable set of colors. This can be used to apply a different colormap.

Definition at line 148 of file itkLabelMapOverlayImageFilter.h.

References itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::m_Functor.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
const FunctorType& itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetFunctor ( void  ) const
inline

Set/Get the overlay functor - defaults to a reasonable set of colors. This can be used to apply a different colormap.

Definition at line 149 of file itkLabelMapOverlayImageFilter.h.

References itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::m_Functor.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
virtual const char* itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetNameOfClass ( ) const
virtual

Runtime information support.

Reimplemented from itk::LabelMapFilter< TLabelMap, TOutputImage >.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
virtual const double& itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetOpacity ( ) const
virtual

Set/Get the opacity of the colored label image. The value must be between 0 and 1

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
static Pointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::New ( )
static

Standard New method.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::operator= ( const Self )
private
template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TLabelMap, TOutputImage >.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetFeatureImage ( const TFeatureImage *  input)
inline
template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
virtual void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetFunctor ( const FunctorType functor)
inlinevirtual

Set/Get the overlay functor - defaults to a reasonable set of colors. This can be used to apply a different colormap.

Definition at line 140 of file itkLabelMapOverlayImageFilter.h.

References itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::m_Functor, and itk::Object::Modified().

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetInput1 ( const TLabelMap *  input)
inline

Set the input image

Definition at line 119 of file itkLabelMapOverlayImageFilter.h.

References itk::ImageToImageFilter< TLabelMap, TOutputImage >::SetInput().

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetInput2 ( const TFeatureImage *  input)
inline
template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
virtual void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetOpacity ( double  _arg)
virtual

Set/Get the opacity of the colored label image. The value must be between 0 and 1

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
virtual void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::ThreadedGenerateData ( const OutputImageRegionType outputRegionForThread,
ThreadIdType  threadId 
)
overrideprotectedvirtual

If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). This superclass will automatically split the output image into a number of pieces, spawn multiple threads, and call ThreadedGenerateData() in each thread. Prior to spawning threads, the BeforeThreadedGenerateData() method is called. After all the threads have completed, the AfterThreadedGenerateData() method is called. If an image processing filter cannot support threading, that filter should provide an implementation of the GenerateData() method instead of providing an implementation of ThreadedGenerateData(). If a filter provides a GenerateData() method as its implementation, then the filter is responsible for allocating the output data. If a filter provides a ThreadedGenerateData() method as its implementation, then the output memory will allocated automatically by this superclass. The ThreadedGenerateData() method should only produce the output specified by "outputThreadRegion" parameter. ThreadedGenerateData() cannot write to any other portion of the output image (as this is responsibility of a different thread).

See Also
GenerateData(), SplitRequestedRegion()

Reimplemented from itk::LabelMapFilter< TLabelMap, TOutputImage >.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
virtual void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::ThreadedProcessLabelObject ( LabelObjectType labelObject)
overrideprotectedvirtual

Member Data Documentation

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
const unsigned int itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::ImageDimension = TOutputImage::ImageDimension
static

ImageDimension constants

Definition at line 95 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
const unsigned int itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::InputImageDimension = TLabelMap::ImageDimension
static

ImageDimension constants

Definition at line 91 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
Barrier::Pointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::m_Barrier
private

Definition at line 179 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
FunctorType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::m_Functor
private
template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
double itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::m_Opacity
private

Definition at line 178 of file itkLabelMapOverlayImageFilter.h.

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image< RGBPixel< typename TFeatureImage::PixelType >, TFeatureImage::ImageDimension >>
const unsigned int itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension
static

ImageDimension constants

Definition at line 93 of file itkLabelMapOverlayImageFilter.h.


The documentation for this class was generated from the following file: