ITK  4.9.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Protected Member Functions | Private Attributes | List of all members
itk::HDF5TransformIOTemplate< TParametersValueType > Class Template Reference

#include <itkHDF5TransformIO.h>

+ Inheritance diagram for itk::HDF5TransformIOTemplate< TParametersValueType >:
+ Collaboration diagram for itk::HDF5TransformIOTemplate< TParametersValueType >:

Detailed Description

template<typename TParametersValueType>
class itk::HDF5TransformIOTemplate< TParametersValueType >

Read&Write transforms in HDF5 Format.

See hdfgroup.org/HDF5 – HDF5 is a physics/astrophysics format, but it is very general and can store pretty much any sort of data.

Definition at line 82 of file itkHDF5TransformIO.h.

Public Types

typedef
TransformIOBaseTemplate
< ParametersValueType >
::ConstTransformListType 
ConstTransformListType
 
typedef
TransformType::FixedParametersType 
FixedParametersType
 
typedef
TransformType::FixedParametersValueType 
FixedParametersValueType
 
typedef
TransformType::ParametersType 
ParametersType
 
typedef
TransformType::ParametersValueType 
ParametersValueType
 
typedef SmartPointer< SelfPointer
 
typedef HDF5TransformIOTemplate Self
 
typedef
TransformIOBaseTemplate
< TParametersValueType > 
Superclass
 
typedef
Superclass::TransformListType 
TransformListType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::TransformIOBaseTemplate< TParametersValueType >
typedef std::list
< ConstTransformPointer
ConstTransformListType
 
typedef TransformType::ConstPointer ConstTransformPointer
 
typedef double FixedParametersValueType
 
typedef TParametersValueType ParametersValueType
 
typedef SmartPointer< SelfPointer
 
typedef TParametersValueType ScalarType
 
typedef TransformIOBaseTemplate Self
 
typedef LightProcessObject Superclass
 
typedef std::list
< TransformPointer
TransformListType
 
typedef TransformType::Pointer TransformPointer
 
typedef TransformBaseTemplate
< ParametersValueType
TransformType
 
- Public Types inherited from itk::LightProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual bool CanReadFile (const char *) override
 
virtual bool CanWriteFile (const char *) override
 
virtual void Read () override
 
virtual void Write () override
 
- Public Member Functions inherited from itk::TransformIOBaseTemplate< TParametersValueType >
template<>
void CorrectTransformPrecisionType (std::string &inputTransformName)
 
template<>
void CorrectTransformPrecisionType (std::string &inputTransformName)
 
void SetTransformList (ConstTransformListType &transformList)
 
virtual void SetFileName (const char *_arg)
 
virtual const char * GetFileName () const
 
TransformListTypeGetTransformList ()
 
TransformListTypeGetReadTransformList ()
 
ConstTransformListTypeGetWriteTransformList ()
 
virtual void SetAppendMode (bool _arg)
 
virtual bool GetAppendMode () const
 
virtual void AppendModeOn ()
 
virtual void AppendModeOff ()
 
- Public Member Functions inherited from itk::LightProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual const bool & GetAbortGenerateData () const
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void UpdateOutputData ()
 
void UpdateProgress (float amount)
 
virtual void SetProgress (float _arg)
 
virtual const float & GetProgress () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) override
 
virtual void UnRegister () const noexceptoverride
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Protected Member Functions

 HDF5TransformIOTemplate ()
 
virtual ~HDF5TransformIOTemplate ()
 
- Protected Member Functions inherited from itk::TransformIOBaseTemplate< TParametersValueType >
void CreateTransform (TransformPointer &ptr, const std::string &ClassName)
 
template<>
const std::string GetTypeNameString ()
 
template<>
const std::string GetTypeNameString ()
 
void OpenStream (std::ofstream &outputStream, bool binary)
 
virtual void PrintSelf (std::ostream &os, Indent indent) const override
 
 TransformIOBaseTemplate ()
 
virtual ~TransformIOBaseTemplate ()
 
- Protected Member Functions inherited from itk::LightProcessObject
virtual void GenerateData ()
 
 LightProcessObject ()
 
 ~LightProcessObject ()
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

ParametersType ReadParameters (const std::string &DataSetName) const
 
FixedParametersType ReadFixedParameters (const std::string &DataSetName) const
 
void WriteParameters (const std::string &name, const ParametersType &parameters)
 
void WriteFixedParameters (const std::string &name, const FixedParametersType &parameters)
 
void WriteString (const std::string &path, const std::string &value)
 
void WriteString (const std::string &path, const char *value)
 
void WriteOneTransform (const int transformIndex, const TransformType *transform)
 

Private Attributes

AutoPointer< H5::H5File > m_H5File
 
virtual const char * GetNameOfClass () const
 
virtual ::itk::LightObject::Pointer CreateAnother () const
 
static Pointer New ()
 

Additional Inherited Members

- Static Public Member Functions inherited from itk::TransformIOBaseTemplate< TParametersValueType >
static void CorrectTransformPrecisionType (std::string &)
 
- Static Public Member Functions inherited from itk::LightProcessObject
static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 
- Static Protected Member Functions inherited from itk::TransformIOBaseTemplate< TParametersValueType >
static const std::string GetTypeNameString ()
 
- Protected Attributes inherited from itk::TransformIOBaseTemplate< TParametersValueType >
bool m_AppendMode
 
std::string m_FileName
 
TransformListType m_ReadTransformList
 
ConstTransformListType m_WriteTransformList
 
- Protected Attributes inherited from itk::LightObject
AtomicInt< int > m_ReferenceCount
 
- Static Private Attributes inherited from itk::HDF5CommonPathNames
static const std::string HDFVersion
 
static const std::string ItkVersion
 
static const std::string OSName
 
static const std::string OSVersion
 
static const std::string transformFixedName
 
static const std::string transformGroupName
 
static const std::string transformParamsName
 
static const std::string transformTypeName
 

Member Typedef Documentation

template<typename TParametersValueType >
typedef TransformIOBaseTemplate<ParametersValueType>::ConstTransformListType itk::HDF5TransformIOTemplate< TParametersValueType >::ConstTransformListType

Definition at line 99 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef TransformType::FixedParametersType itk::HDF5TransformIOTemplate< TParametersValueType >::FixedParametersType

Definition at line 94 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef TransformType::FixedParametersValueType itk::HDF5TransformIOTemplate< TParametersValueType >::FixedParametersValueType

Definition at line 95 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef TransformType::ParametersType itk::HDF5TransformIOTemplate< TParametersValueType >::ParametersType

Definition at line 92 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef TransformType::ParametersValueType itk::HDF5TransformIOTemplate< TParametersValueType >::ParametersValueType

Definition at line 93 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef SmartPointer<Self> itk::HDF5TransformIOTemplate< TParametersValueType >::Pointer

Definition at line 88 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef HDF5TransformIOTemplate itk::HDF5TransformIOTemplate< TParametersValueType >::Self

Definition at line 86 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef TransformIOBaseTemplate<TParametersValueType> itk::HDF5TransformIOTemplate< TParametersValueType >::Superclass

Definition at line 87 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef Superclass::TransformListType itk::HDF5TransformIOTemplate< TParametersValueType >::TransformListType

Definition at line 91 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef Superclass::TransformPointer itk::HDF5TransformIOTemplate< TParametersValueType >::TransformPointer

Definition at line 90 of file itkHDF5TransformIO.h.

template<typename TParametersValueType >
typedef Superclass::TransformType itk::HDF5TransformIOTemplate< TParametersValueType >::TransformType

Definition at line 89 of file itkHDF5TransformIO.h.

Constructor & Destructor Documentation

template<typename TParametersValueType >
itk::HDF5TransformIOTemplate< TParametersValueType >::HDF5TransformIOTemplate ( )
protected
template<typename TParametersValueType >
virtual itk::HDF5TransformIOTemplate< TParametersValueType >::~HDF5TransformIOTemplate ( )
protectedvirtual

Member Function Documentation

template<typename TParametersValueType >
virtual bool itk::HDF5TransformIOTemplate< TParametersValueType >::CanReadFile ( const char *  )
overridevirtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::TransformIOBaseTemplate< TParametersValueType >.

template<typename TParametersValueType >
virtual bool itk::HDF5TransformIOTemplate< TParametersValueType >::CanWriteFile ( const char *  )
overridevirtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::TransformIOBaseTemplate< TParametersValueType >.

template<typename TParametersValueType >
virtual::itk::LightObject::Pointer itk::HDF5TransformIOTemplate< TParametersValueType >::CreateAnother ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::LightProcessObject.

template<typename TParametersValueType >
virtual const char* itk::HDF5TransformIOTemplate< TParametersValueType >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::TransformIOBaseTemplate< TParametersValueType >.

template<typename TParametersValueType >
static Pointer itk::HDF5TransformIOTemplate< TParametersValueType >::New ( )
static

Run-time type information (and related methods).

template<typename TParametersValueType >
virtual void itk::HDF5TransformIOTemplate< TParametersValueType >::Read ( )
overridevirtual

Reads the data from disk into the memory buffer provided.

Implements itk::TransformIOBaseTemplate< TParametersValueType >.

template<typename TParametersValueType >
FixedParametersType itk::HDF5TransformIOTemplate< TParametersValueType >::ReadFixedParameters ( const std::string &  DataSetName) const
private

Read a parameter array from the file location name

template<typename TParametersValueType >
ParametersType itk::HDF5TransformIOTemplate< TParametersValueType >::ReadParameters ( const std::string &  DataSetName) const
private

Read a parameter array from the file location name

template<typename TParametersValueType >
virtual void itk::HDF5TransformIOTemplate< TParametersValueType >::Write ( )
overridevirtual

Writes the data to disk from the memory buffer provided. Make sure that the IORegions has been set properly. The buffer is cast to a pointer to the beginning of the image data.

Implements itk::TransformIOBaseTemplate< TParametersValueType >.

template<typename TParametersValueType >
void itk::HDF5TransformIOTemplate< TParametersValueType >::WriteFixedParameters ( const std::string &  name,
const FixedParametersType parameters 
)
private

Write a parameter array to the file location name

template<typename TParametersValueType >
void itk::HDF5TransformIOTemplate< TParametersValueType >::WriteOneTransform ( const int  transformIndex,
const TransformType transform 
)
private

write a string variable

template<typename TParametersValueType >
void itk::HDF5TransformIOTemplate< TParametersValueType >::WriteParameters ( const std::string &  name,
const ParametersType parameters 
)
private

Write a parameter array to the file location name

template<typename TParametersValueType >
void itk::HDF5TransformIOTemplate< TParametersValueType >::WriteString ( const std::string &  path,
const std::string &  value 
)
private

write a string variable

template<typename TParametersValueType >
void itk::HDF5TransformIOTemplate< TParametersValueType >::WriteString ( const std::string &  path,
const char *  value 
)
private

write a string variable

Member Data Documentation

template<typename TParametersValueType >
AutoPointer<H5::H5File> itk::HDF5TransformIOTemplate< TParametersValueType >::m_H5File
private

Definition at line 146 of file itkHDF5TransformIO.h.


The documentation for this class was generated from the following file: