ITK  4.9.0
Insight Segmentation and Registration Toolkit
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itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType > Class Template Reference

#include <itkDiffusionTensor3DReconstructionImageFilter.h>

+ Inheritance diagram for itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >:
+ Collaboration diagram for itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >:

Detailed Description

template<typename TReferenceImagePixelType, typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
class itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >

This class takes as input one or more reference image (acquired in the absence of diffusion sensitizing gradients) and 'n' diffusion weighted images and their gradient directions and computes an image of tensors. (with DiffusionTensor3D as the pixel type). Once that is done, you can apply filters on this tensor image to compute FA, ADC, RGB weighted maps etc.

Inputs and Usage
There are two ways to use this class. When you have one reference image and n gradient images, you would use the class as
* filter->SetReferenceImage( image0 );
* filter->AddGradientImage( direction1, image1 );
* filter->AddGradientImage( direction2, image2 );
* ...
*
When you have the 'n' gradient and one or more reference images in a single multi-component image (VectorImage), you can specify the images simply as
* filter->SetGradientImage( directionsContainer, vectorImage );
*
Note that this method is used to specify both the reference and gradient images. This is convenient when the DWI images are read in using the NRRD format. Like the Nrrd format, the reference images are those components of the vectorImage whose gradient direction is (0,0,0). If more than one reference image is present, they are averaged prior to applying the Stejskal-Tanner equations.
Outputs
The output image is an image of Tensors:
* Image< DiffusionTensor3D< TTensorPixelType >, 3 >
*
Parameters
  • Threshold - Threshold on the reference image data. The output tensor will be a null tensor for pixels in the reference image that have a value less than this.
  • BValue - See the documentation of SetBValue().
  • At least 6 gradient images must be specified for the filter to be able to run.
Template parameters
The class is templated over the pixel type of the reference and gradient images (expected to be scalar data types) and the internal representation of the DiffusionTensor3D pixel (double, float etc).
References:
  • [1] C.F.Westin, S.E.Maier, H.Mamata, A.Nabavi, F.A.Jolesz, R.Kikinis, "Processing and visualization for Diffusion tensor MRI", Medical image Analysis, 2002, pp 93-108.
  • [2] A Dual Tensor Basis Solution to the Stejskal-Tanner Equations for DT-MRI
Warning
Although this filter has been written to support multiple threads, please set the number of threads to 1.
* filter->SetNumberOfThreads(1);
*
This is due to buggy code in netlib/dsvdc, that is called by vnl_svd. (used to compute the pseudo-inverse to find the dual tensor basis).
Author
Xiaodong Tao, GE, for contributing parts of this class.
Casey Goodlet, UNC for patches to support multiple baseline images and other improvements.
Note
This work is part of the National Alliance for Medical image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
Examples and Datasets
Sample DTI datasets may be obtained from
*   \li ftp://public.kitware.com/pub/namic/DTI/Data/dwi.nhdr
*   \li ftp://public.kitware.com/pub/namic/DTI/Data/dwi.img.gz ( gunzip this )
* 
See Also
DiffusionTensor3D SymmetricSecondRankTensor
Examples:
Examples/Filtering/DiffusionTensor3DReconstructionImageFilter.cxx.

Definition at line 126 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Public Types

typedef vnl_matrix< double > CoefficientMatrixType
 
typedef SmartPointer< const SelfConstPointer
 
typedef VectorContainer
< unsigned int,
GradientDirectionType
GradientDirectionContainerType
 
typedef vnl_vector_fixed
< double, 3 > 
GradientDirectionType
 
typedef VectorImage
< GradientPixelType, 3 > 
GradientImagesType
 
typedef Image
< GradientPixelType, 3 > 
GradientImageType
 
typedef TGradientImagePixelType GradientPixelType
 
typedef TMaskImageType MaskImageType
 
typedef SpatialObject< 3 > MaskSpatialObjectType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef TensorImageType OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::InputImageType ReferenceImageType
 
typedef TReferenceImagePixelType ReferencePixelType
 
typedef
DiffusionTensor3DReconstructionImageFilter 
Self
 
typedef ImageToImageFilter
< Image
< TReferenceImagePixelType, 3 >
, Image< DiffusionTensor3D
< TTensorPixelType >, 3 > > 
Superclass
 
typedef vnl_matrix_fixed
< double, 6, 6 > 
TensorBasisMatrixType
 
typedef Image< TensorPixelType, 3 > TensorImageType
 
typedef DiffusionTensor3D
< TTensorPixelType > 
TensorPixelType
 
- Public Types inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef Image
< TReferenceImagePixelType, 3 > 
InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource< Image
< DiffusionTensor3D
< TTensorPixelType >, 3 > > 
Superclass
 
- Public Types inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef Image
< DiffusionTensor3D
< TTensorPixelType >, 3 > 
OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
virtual const char * GetNameOfClass () const
 
virtual ReferenceImageTypeGetReferenceImage ()
 
void SetGradientImage (GradientDirectionContainerType *, const GradientImagesType *image)
 
void SetMaskImage (MaskImageType *maskImage)
 
void SetMaskSpatialObject (MaskSpatialObjectType *maskSpatialObject)
 
void SetReferenceImage (ReferenceImageType *referenceImage)
 
 typedef (Concept::EqualityComparable< ReferencePixelType >) ReferenceEqualityComparableCheck
 
 typedef (Concept::EqualityComparable< TensorPixelType >) TensorEqualityComparableCheck
 
 typedef (Concept::Convertible< GradientPixelType, double >) GradientConvertibleToDoubleCheck
 
 typedef (Concept::Convertible< double, TensorPixelType >) DoubleConvertibleToTensorCheck
 
 typedef (Concept::AdditiveOperators< GradientPixelType, GradientPixelType, ReferencePixelType >) GradientReferenceAdditiveOperatorsCheck
 
 typedef (Concept::AdditiveAndAssignOperators< GradientPixelType, ReferencePixelType >) GradientReferenceAdditiveAndAssignOperatorsCheck
 
 typedef (Concept::OStreamWritable< ReferencePixelType >) ReferenceOStreamWritableCheck
 
 typedef (Concept::OStreamWritable< TensorPixelType >) TensorOStreamWritableCheck
 
void AddGradientImage (const GradientDirectionType &, const GradientImageType *image)
 
const GradientImageTypeGetGradientImage (unsigned index) const
 
virtual GradientDirectionType GetGradientDirection (unsigned int idx) const
 
virtual void SetThreshold (ReferencePixelType _arg)
 
virtual ReferencePixelType GetThreshold () const
 
virtual void SetBValue (TTensorPixelType _arg)
 
virtual const TTensorPixelType & GetBValue () const
 
- Public Member Functions inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
const InputImageTypeGetInput () const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput () override
 
virtual void PopFrontInput () override
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const Image< TReferenceImagePixelType, 3 > *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *output)
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) override
 
virtual void UnRegister () const noexceptoverride
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Protected Types

enum  GradientImageTypeEnumeration {
  GradientIsInASingleImage = 1,
  GradientIsInManyImages,
  Else
}
 
- Protected Types inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 

Protected Member Functions

void BeforeThreadedGenerateData () override
 
void ComputeTensorBasis ()
 
 DiffusionTensor3DReconstructionImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType) override
 
void VerifyPreconditions () override
 
 ~DiffusionTensor3DReconstructionImageFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
virtual void GenerateInputRequestedRegion () override
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation () override
 
 ~ImageToImageFilter ()
 
void PushBackInput (const DataObject *input) override
 
void PushFrontInput (const DataObject *input) override
 
- Protected Member Functions inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void GenerateData () override
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
 ~ProcessObject ()
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Attributes

CoefficientMatrixType m_BMatrix
 
TTensorPixelType m_BValue
 
GradientDirectionContainerType::Pointer m_GradientDirectionContainer
 
GradientImageTypeEnumeration m_GradientImageTypeEnumeration
 
bool m_MaskImagePresent
 
unsigned int m_NumberOfBaselineImages
 
unsigned int m_NumberOfGradientDirections
 
TensorBasisMatrixType m_TensorBasis
 
ReferencePixelType m_Threshold
 

Additional Inherited Members

- Static Public Attributes inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
static const unsigned int OutputImageDimension
 
- Static Protected Member Functions inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
AtomicInt< int > m_ReferenceCount
 

Member Typedef Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef vnl_matrix< double > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::CoefficientMatrixType
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef SmartPointer< const Self > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ConstPointer
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef VectorContainer< unsigned int, GradientDirectionType > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientDirectionContainerType

Container to hold gradient directions of the 'n' DW measurements

Definition at line 188 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef vnl_vector_fixed< double, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientDirectionType

Holds each magnetic field gradient used to acquire one DWImage

Definition at line 184 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef VectorImage< GradientPixelType, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientImagesType

An alternative typedef defining one (of the many) gradient images. It will be assumed that the vectorImage has the same dimension as the Reference image and a vector length parameter of n (number of gradient directions)

Definition at line 170 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef Image< GradientPixelType, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientImageType

Typedef defining one (of the many) gradient images.

Definition at line 164 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef TGradientImagePixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientPixelType
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef TMaskImageType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::MaskImageType

The type for the optional mask image

Definition at line 176 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef SpatialObject<3> itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::MaskSpatialObjectType

The type for the optional SpatialObject for masking

Definition at line 173 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef Superclass::OutputImageRegionType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::OutputImageRegionType
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef TensorImageType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::OutputImageType
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef SmartPointer< Self > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::Pointer
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef Superclass::InputImageType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ReferenceImageType

Reference image data, This image is acquired in the absence of a diffusion sensitizing field gradient

Definition at line 154 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef TReferenceImagePixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ReferencePixelType
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef DiffusionTensor3DReconstructionImageFilter itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::Self
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::Superclass
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef vnl_matrix_fixed< double, 6, 6 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::TensorBasisMatrixType

Holds the tensor basis coefficients G_k

Definition at line 179 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef Image< TensorPixelType, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::TensorImageType
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
typedef DiffusionTensor3D< TTensorPixelType > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::TensorPixelType

Member Enumeration Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
enum itk::DiffusionTensor3DReconstructionImageFilter::GradientImageTypeEnumeration
protected

enum to indicate if the gradient image is specified as a single multi- component image or as several separate images

Enumerator
GradientIsInASingleImage 
GradientIsInManyImages 
Else 

Definition at line 300 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Constructor & Destructor Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::DiffusionTensor3DReconstructionImageFilter ( )
protected
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::~DiffusionTensor3DReconstructionImageFilter ( )
inlineprotected

Member Function Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::AddGradientImage ( const GradientDirectionType ,
const GradientImageType image 
)

Set method to add a gradient direction and its corresponding image.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::BeforeThreadedGenerateData ( void  )
overrideprotectedvirtual

If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ComputeTensorBasis ( )
protected
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
virtual::itk::LightObject::Pointer itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
virtual const TTensorPixelType& itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetBValue ( ) const
virtual

The BValue $ (s/mm^2) $ value used in normalizing the tensors to physically meaningful units. See equation (24) of the first reference for a description of how this is applied to the tensor estimation. Equation (1) of the same reference describes the physical significance.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
virtual GradientDirectionType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetGradientDirection ( unsigned int  idx) const
inlinevirtual
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
const GradientImageType* itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetGradientImage ( unsigned  index) const

Set method to add a gradient direction and its corresponding image.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
virtual const char* itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetNameOfClass ( ) const
virtual
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
virtual ReferenceImageType* itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetReferenceImage ( )
inlinevirtual

Get reference image

Definition at line 219 of file itkDiffusionTensor3DReconstructionImageFilter.h.

References itk::ProcessObject::GetInput().

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
virtual ReferencePixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetThreshold ( ) const
virtual

Threshold on the reference image data. The output tensor will be a null tensor for pixels in the reference image that have a value less than this threshold.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
static Pointer itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::New ( )
static

Method for creation through the object factory.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
virtual void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetBValue ( TTensorPixelType  _arg)
virtual

The BValue $ (s/mm^2) $ value used in normalizing the tensors to physically meaningful units. See equation (24) of the first reference for a description of how this is applied to the tensor estimation. Equation (1) of the same reference describes the physical significance.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetGradientImage ( GradientDirectionContainerType ,
const GradientImagesType image 
)

Another set method to add a gradient directions and its corresponding image. The image here is a VectorImage. The user is expected to pass the gradient directions in a container. The ith element of the container corresponds to the gradient direction of the ith component image the VectorImage. For the baseline image, a vector of all zeros should be set.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetMaskImage ( MaskImageType maskImage)

set an image mask

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetMaskSpatialObject ( MaskSpatialObjectType maskSpatialObject)

set a spatial object mask

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetReferenceImage ( ReferenceImageType referenceImage)
inline
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
virtual void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetThreshold ( ReferencePixelType  _arg)
virtual

Threshold on the reference image data. The output tensor will be a null tensor for pixels in the reference image that have a value less than this threshold.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ThreadedGenerateData ( const OutputImageRegionType outputRegionForThread,
ThreadIdType   
)
overrideprotected
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef ( Concept::EqualityComparable< ReferencePixelType )

This class requires ReferenceEqualityComparableCheck in the form of ( Concept::EqualityComparable< ReferencePixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef ( Concept::EqualityComparable< TensorPixelType )

This class requires TensorEqualityComparableCheck in the form of ( Concept::EqualityComparable< TensorPixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef ( Concept::Convertible< GradientPixelType, double >  )

This class requires GradientConvertibleToDoubleCheck in the form of ( Concept::Convertible< GradientPixelType, double > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef ( Concept::Convertible< double, TensorPixelType )

This class requires DoubleConvertibleToTensorCheck in the form of ( Concept::Convertible< double, TensorPixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef ( Concept::AdditiveOperators< GradientPixelType, GradientPixelType, ReferencePixelType )

This class requires GradientReferenceAdditiveOperatorsCheck in the form of ( Concept::AdditiveOperators< GradientPixelType, GradientPixelType, ReferencePixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef ( Concept::AdditiveAndAssignOperators< GradientPixelType, ReferencePixelType )

This class requires GradientReferenceAdditiveAndAssignOperatorsCheck in the form of ( Concept::AdditiveAndAssignOperators< GradientPixelType, ReferencePixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef ( Concept::OStreamWritable< ReferencePixelType )

This class requires ReferenceOStreamWritableCheck in the form of ( Concept::OStreamWritable< ReferencePixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef ( Concept::OStreamWritable< TensorPixelType )

This class requires TensorOStreamWritableCheck in the form of ( Concept::OStreamWritable< TensorPixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::VerifyPreconditions ( )
overrideprotectedvirtual

Verifies that the process object has been configured correctly, that all required inputs are set, and needed parameters are set appropriately. If not valid an exceptions will be thrown.

This method is called before UpdateOutputInformation is propagated to the inputs.

The ProcessObject's implementation verifies that the NumberOfRequiredInputs are set and not null.

Reimplemented from itk::ProcessObject.

Member Data Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
CoefficientMatrixType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_BMatrix
private
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
TTensorPixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_BValue
private

LeBihan's b-value for normalizing tensors

Definition at line 326 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
GradientDirectionContainerType::Pointer itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_GradientDirectionContainer
private
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
GradientImageTypeEnumeration itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_GradientImageTypeEnumeration
private
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
bool itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_MaskImagePresent
private

Mask Image Present

Definition at line 332 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
unsigned int itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_NumberOfBaselineImages
private

Number of baseline images

Definition at line 320 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
unsigned int itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_NumberOfGradientDirections
private
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
TensorBasisMatrixType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_TensorBasis
private
template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
ReferencePixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_Threshold
private

Threshold on the reference image data

Definition at line 323 of file itkDiffusionTensor3DReconstructionImageFilter.h.


The documentation for this class was generated from the following file: