ITK  4.6.0
Insight Segmentation and Registration Toolkit
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itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField > Class Template Reference

#include <itkTimeVaryingVelocityFieldIntegrationImageFilter.h>

+ Inheritance diagram for itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >:
+ Collaboration diagram for itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >:

Detailed Description

template<typename TTimeVaryingVelocityField, typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
class itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >

Integrate a time-varying velocity field using 4th order Runge-Kutta.

Diffeomorphisms are topology-preserving mappings that are useful for describing biologically plausible deformations. Mathematically, a diffeomorphism, $ \phi $, is generated from a time-varying velocity field, v, as described by the integral equation:

\[ \phi(t_b) = \phi(t_a) + \int_{t_a}^{t_b} v(\phi(t),t) dt \]

In this class, the input is the time-varying velocity field and an initial diffeomorophism. The output diffeomorphism is produced using fourth order Runge-Kutta.

Warning
The output deformation field needs to have dimensionality of 1 less than the input time-varying velocity field.
Author
Nick Tustison
Brian Avants

Definition at line 55 of file itkTimeVaryingVelocityFieldIntegrationImageFilter.h.

Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef
DisplacementFieldInterpolatorType::Pointer 
DisplacementFieldInterpolatorPointer
 
typedef
VectorInterpolateImageFunction
< DisplacementFieldType,
ScalarType
DisplacementFieldInterpolatorType
 
typedef
DisplacementFieldType::Pointer 
DisplacementFieldPointer
 
typedef TDisplacementField DisplacementFieldType
 
typedef
DisplacementFieldType::RegionType 
OutputRegionType
 
typedef SmartPointer< SelfPointer
 
typedef
DisplacementFieldType::PointType 
PointType
 
typedef VectorType::RealValueType RealType
 
typedef VectorType::ValueType ScalarType
 
typedef
TimeVaryingVelocityFieldIntegrationImageFilter 
Self
 
typedef ImageToImageFilter
< TTimeVaryingVelocityField,
TDisplacementField > 
Superclass
 
typedef TTimeVaryingVelocityField TimeVaryingVelocityFieldType
 
typedef
DisplacementFieldType::PixelType 
VectorType
 
typedef
VelocityFieldInterpolatorType::Pointer 
VelocityFieldInterpolatorPointer
 
typedef
VectorInterpolateImageFunction
< TimeVaryingVelocityFieldType,
ScalarType
VelocityFieldInterpolatorType
 
- Public Types inherited from itk::ImageToImageFilter< TTimeVaryingVelocityField, TDisplacementField >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TTimeVaryingVelocityField InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource
< TDisplacementField > 
Superclass
 
- Public Types inherited from itk::ImageSource< TDisplacementField >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TDisplacementField OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual RealType GetLowerTimeBound () const
 
virtual const char * GetNameOfClass () const
 
virtual unsigned int GetNumberOfIntegrationSteps () const
 
virtual RealType GetUpperTimeBound () const
 
virtual void SetLowerTimeBound (RealType _arg)
 
virtual void SetNumberOfIntegrationSteps (unsigned int _arg)
 
virtual void SetUpperTimeBound (RealType _arg)
 
virtual void SetVelocityFieldInterpolator (VelocityFieldInterpolatorType *_arg)
 
virtual
VelocityFieldInterpolatorType
GetModifiableVelocityFieldInterpolator ()
 
virtual const
VelocityFieldInterpolatorType
GetVelocityFieldInterpolator () const
 
virtual void SetDisplacementFieldInterpolator (DisplacementFieldInterpolatorType *_arg)
 
virtual
DisplacementFieldInterpolatorType
GetModifiableDisplacementFieldInterpolator ()
 
virtual const
DisplacementFieldInterpolatorType
GetDisplacementFieldInterpolator () const
 
virtual void SetInitialDiffeomorphism (DisplacementFieldType *_arg)
 
virtual DisplacementFieldTypeGetModifiableInitialDiffeomorphism ()
 
virtual const
DisplacementFieldType
GetInitialDiffeomorphism () const
 
- Public Member Functions inherited from itk::ImageToImageFilter< TTimeVaryingVelocityField, TDisplacementField >
const InputImageTypeGetInput (void) const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TTimeVaryingVelocityField *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TDisplacementField >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput (void)
 
const OutputImageTypeGetOutput (void) const
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) ITK_OVERRIDE
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
NameArray GetInputNames () const
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArray GetOutputs ()
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const ITK_OVERRIDE
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) ITK_OVERRIDE
 
virtual void UnRegister () const ITK_OVERRIDE
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static const unsigned int InputImageDimension = TTimeVaryingVelocityField::ImageDimension
 
static const unsigned int OutputImageDimension = TDisplacementField::ImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TTimeVaryingVelocityField, TDisplacementField >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TDisplacementField >
static const unsigned int OutputImageDimension
 

Protected Member Functions

virtual void BeforeThreadedGenerateData ()
 
virtual void GenerateOutputInformation ()
 
VectorType IntegrateVelocityAtPoint (const PointType &initialSpatialPoint, const TimeVaryingVelocityFieldType *inputField)
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void ThreadedGenerateData (const OutputRegionType &, ThreadIdType)
 
 TimeVaryingVelocityFieldIntegrationImageFilter ()
 
 ~TimeVaryingVelocityFieldIntegrationImageFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TTimeVaryingVelocityField, TDisplacementField >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
virtual void GenerateInputRequestedRegion ()
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation ()
 
 ~ImageToImageFilter ()
 
void PushBackInput (const DataObject *input)
 
void PushFrontInput (const DataObject *input)
 
- Protected Member Functions inherited from itk::ImageSource< TDisplacementField >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void GenerateData () ITK_OVERRIDE
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter (void) const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
void SetRequiredInputNames (const NameArray &)
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Protected Attributes

DisplacementFieldInterpolatorPointer m_DisplacementFieldInterpolator
 
DisplacementFieldPointer m_InitialDiffeomorphism
 
RealType m_LowerTimeBound
 
unsigned int m_NumberOfIntegrationSteps
 
unsigned int m_NumberOfTimePoints
 
RealType m_UpperTimeBound
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 

Private Member Functions

void operator= (const Self &)
 
 TimeVaryingVelocityFieldIntegrationImageFilter (const Self &)
 

Private Attributes

VelocityFieldInterpolatorPointer m_VelocityFieldInterpolator
 

Additional Inherited Members

- Protected Types inherited from itk::ImageToImageFilter< TTimeVaryingVelocityField, TDisplacementField >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Protected Types inherited from itk::LightObject
typedef int InternalReferenceCountType
 
- Static Protected Member Functions inherited from itk::ImageSource< TDisplacementField >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 

Member Typedef Documentation

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef SmartPointer<const Self> itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::ConstPointer
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef DisplacementFieldInterpolatorType::Pointer itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::DisplacementFieldInterpolatorPointer
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef VectorInterpolateImageFunction<DisplacementFieldType, ScalarType> itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::DisplacementFieldInterpolatorType
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef DisplacementFieldType::Pointer itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::DisplacementFieldPointer
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef TDisplacementField itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::DisplacementFieldType
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef DisplacementFieldType::RegionType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::OutputRegionType
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef SmartPointer<Self> itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::Pointer
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef DisplacementFieldType::PointType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::PointType
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef VectorType::RealValueType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::RealType
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef VectorType::ValueType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::ScalarType
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef TimeVaryingVelocityFieldIntegrationImageFilter itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::Self
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef ImageToImageFilter<TTimeVaryingVelocityField, TDisplacementField> itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::Superclass
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef TTimeVaryingVelocityField itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::TimeVaryingVelocityFieldType
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef DisplacementFieldType::PixelType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::VectorType
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef VelocityFieldInterpolatorType::Pointer itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::VelocityFieldInterpolatorPointer
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
typedef VectorInterpolateImageFunction<TimeVaryingVelocityFieldType, ScalarType> itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::VelocityFieldInterpolatorType

Constructor & Destructor Documentation

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::TimeVaryingVelocityFieldIntegrationImageFilter ( )
protected
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::~TimeVaryingVelocityFieldIntegrationImageFilter ( )
protected
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::TimeVaryingVelocityFieldIntegrationImageFilter ( const Self )
private

Member Function Documentation

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::BeforeThreadedGenerateData ( void  )
protectedvirtual

If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::ImageSource< TDisplacementField >.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual::itk::LightObject::Pointer itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GenerateOutputInformation ( )
protectedvirtual

Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented from itk::ProcessObject.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual const DisplacementFieldInterpolatorType* itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetDisplacementFieldInterpolator ( ) const
virtual

Get/Set the deformation field interpolator for the initial diffeomorphism (if set). Default = linear.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual const DisplacementFieldType* itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetInitialDiffeomorphism ( ) const
virtual

Get/Set the initial diffeomorphism

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual RealType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetLowerTimeBound ( ) const
virtual

Get the lower time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1].

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual DisplacementFieldInterpolatorType* itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetModifiableDisplacementFieldInterpolator ( )
virtual

Get/Set the deformation field interpolator for the initial diffeomorphism (if set). Default = linear.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual DisplacementFieldType* itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetModifiableInitialDiffeomorphism ( )
virtual

Get/Set the initial diffeomorphism

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual VelocityFieldInterpolatorType* itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetModifiableVelocityFieldInterpolator ( )
virtual

Get/Set the time-varying velocity field interpolator. Default = linear.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual const char* itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetNameOfClass ( ) const
virtual

Run-time type information ( and related methods )

Reimplemented from itk::ImageToImageFilter< TTimeVaryingVelocityField, TDisplacementField >.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual unsigned int itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetNumberOfIntegrationSteps ( ) const
virtual

Get the number of integration steps used in the Runge-Kutta solution of the initial value problem. Default = 10.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual RealType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetUpperTimeBound ( ) const
virtual

Get the upper time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1].

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual const VelocityFieldInterpolatorType* itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::GetVelocityFieldInterpolator ( ) const
virtual

Get/Set the time-varying velocity field interpolator. Default = linear.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
VectorType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::IntegrateVelocityAtPoint ( const PointType initialSpatialPoint,
const TimeVaryingVelocityFieldType inputField 
)
protected
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
static Pointer itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::New ( )
static

Method for creation through the object factory.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::operator= ( const Self )
private
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TTimeVaryingVelocityField, TDisplacementField >.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::SetDisplacementFieldInterpolator ( DisplacementFieldInterpolatorType _arg)
virtual

Get/Set the deformation field interpolator for the initial diffeomorphism (if set). Default = linear.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::SetInitialDiffeomorphism ( DisplacementFieldType _arg)
virtual

Get/Set the initial diffeomorphism

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::SetLowerTimeBound ( RealType  _arg)
virtual

Set the lower time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1].

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::SetNumberOfIntegrationSteps ( unsigned int  _arg)
virtual

Set the number of integration steps used in the Runge-Kutta solution of the initial value problem. Default = 10.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::SetUpperTimeBound ( RealType  _arg)
virtual

Set the upper time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1].

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::SetVelocityFieldInterpolator ( VelocityFieldInterpolatorType _arg)
virtual

Get/Set the time-varying velocity field interpolator. Default = linear.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
virtual void itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::ThreadedGenerateData ( const OutputRegionType ,
ThreadIdType   
)
protectedvirtual

Member Data Documentation

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
const unsigned int itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::InputImageDimension = TTimeVaryingVelocityField::ImageDimension
static

Dimensionality of input data is assumed to be one more than the output data the same.

Definition at line 75 of file itkTimeVaryingVelocityFieldIntegrationImageFilter.h.

template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
DisplacementFieldInterpolatorPointer itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::m_DisplacementFieldInterpolator
protected
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
DisplacementFieldPointer itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::m_InitialDiffeomorphism
protected
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
RealType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::m_LowerTimeBound
protected
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
unsigned int itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::m_NumberOfIntegrationSteps
protected
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
unsigned int itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::m_NumberOfTimePoints
protected
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
RealType itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::m_UpperTimeBound
protected
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
VelocityFieldInterpolatorPointer itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::m_VelocityFieldInterpolator
private
template<typename TTimeVaryingVelocityField , typename TDisplacementField = Image<typename TTimeVaryingVelocityField::PixelType, TTimeVaryingVelocityField::ImageDimension - 1>>
const unsigned int itk::TimeVaryingVelocityFieldIntegrationImageFilter< TTimeVaryingVelocityField, TDisplacementField >::OutputImageDimension = TDisplacementField::ImageDimension
static

The documentation for this class was generated from the following file: