ITK  4.6.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Protected Attributes | Private Member Functions | Private Attributes | List of all members
itk::TIFFImageIO Class Reference

#include <itkTIFFImageIO.h>

+ Inheritance diagram for itk::TIFFImageIO:
+ Collaboration diagram for itk::TIFFImageIO:

Detailed Description

ImageIO object for reading and writing TIFF images.

Wiki Examples:

Definition at line 43 of file itkTIFFImageIO.h.

Public Types

enum  {
  NOFORMAT,
  RGB_,
  GRAYSCALE,
  PALETTE_RGB,
  PALETTE_GRAYSCALE,
  OTHER
}
 
enum  {
  NoCompression,
  PackBits,
  JPEG,
  Deflate,
  LZW
}
 
typedef SmartPointer< SelfPointer
 
typedef TIFFImageIO Self
 
typedef ImageIOBase Superclass
 
- Public Types inherited from itk::ImageIOBase
typedef std::vector< std::string > ArrayOfExtensionsType
 
typedef ::itk::OffsetValueType BufferSizeType
 
enum  ByteOrder {
  BigEndian,
  LittleEndian,
  OrderNotApplicable
}
 
enum  FileType {
  ASCII,
  Binary,
  TypeNotApplicable
}
 
typedef ::itk::IndexValueType IndexValueType
 
enum  IOComponentType {
  UNKNOWNCOMPONENTTYPE,
  UCHAR,
  CHAR,
  USHORT,
  SHORT,
  UINT,
  INT,
  ULONG,
  LONG,
  FLOAT,
  DOUBLE
}
 
enum  IOPixelType {
  UNKNOWNPIXELTYPE,
  SCALAR,
  RGB,
  RGBA,
  OFFSET,
  VECTOR,
  POINT,
  COVARIANTVECTOR,
  SYMMETRICSECONDRANKTENSOR,
  DIFFUSIONTENSOR3D,
  COMPLEX,
  FIXEDARRAY,
  MATRIX
}
 
typedef SmartPointer< SelfPointer
 
typedef ImageIOBase Self
 
typedef ::itk::intmax_t SizeType
 
typedef ::itk::SizeValueType SizeValueType
 
typedef LightProcessObject Superclass
 
- Public Types inherited from itk::LightProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual bool CanReadFile (const char *) ITK_OVERRIDE
 
virtual bool CanWriteFile (const char *) ITK_OVERRIDE
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const char * GetNameOfClass () const
 
virtual void Read (void *buffer) ITK_OVERRIDE
 
virtual void ReadImageInformation () ITK_OVERRIDE
 
virtual void ReadTiles (void *buffer)
 
virtual void ReadVolume (void *buffer)
 
void SetCompression (int compression)
 
void SetCompressionToDeflate ()
 
void SetCompressionToJPEG ()
 
void SetCompressionToLZW ()
 
void SetCompressionToNoCompression ()
 
void SetCompressionToPackBits ()
 
virtual void Write (const void *buffer) ITK_OVERRIDE
 
virtual void WriteImageInformation () ITK_OVERRIDE
 
virtual void SetJPEGQuality (int _arg)
 
virtual int GetJPEGQuality () const
 
- Public Member Functions inherited from itk::ImageIOBase
virtual bool CanStreamRead ()
 
virtual bool CanStreamWrite ()
 
virtual ImageIORegion GenerateStreamableReadRegionFromRequestedRegion (const ImageIORegion &requested) const
 
virtual unsigned int GetActualNumberOfSplitsForWriting (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)
 
std::string GetByteOrderAsString (ByteOrder) const
 
virtual unsigned int GetComponentSize () const
 
virtual IOComponentType GetComponentType () const
 
virtual const std::type_info & GetComponentTypeInfo () const
 
virtual std::vector< double > GetDefaultDirection (unsigned int i) const
 
virtual itk::SizeValueType GetDimensions (unsigned int i) const
 
virtual std::vector< double > GetDirection (unsigned int i) const
 
std::string GetFileTypeAsString (FileType) const
 
SizeType GetImageSizeInBytes () const
 
SizeType GetImageSizeInComponents () const
 
SizeType GetImageSizeInPixels () const
 
virtual unsigned int GetNumberOfDimensions () const
 
virtual double GetOrigin (unsigned int i) const
 
virtual SizeType GetPixelStride () const
 
virtual double GetSpacing (unsigned int i) const
 
virtual ImageIORegion GetSplitRegionForWriting (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)
 
const ArrayOfExtensionsTypeGetSupportedReadExtensions () const
 
const ArrayOfExtensionsTypeGetSupportedWriteExtensions () const
 
void SetByteOrderToLittleEndian ()
 
virtual void SetComponentType (const IOComponentType _arg)
 
virtual void SetDirection (unsigned int i, const std::vector< double > &direction)
 
virtual void SetDirection (unsigned int i, const vnl_vector< double > &direction)
 
void SetFileTypeToBinary ()
 
void SetNumberOfDimensions (unsigned int)
 
virtual void SetOrigin (unsigned int i, double origin)
 
template<typename TPixel , unsigned VLength>
void SetPixelTypeInfo (const SymmetricSecondRankTensor< TPixel, VLength > *)
 
template<typename TPixel >
void SetPixelTypeInfo (const DiffusionTensor3D< TPixel > *)
 
template<typename TPixel , unsigned VLength>
void SetPixelTypeInfo (const Matrix< TPixel, VLength, VLength > *)
 
template<typename TPixel >
void SetPixelTypeInfo (const std::complex< TPixel > *)
 
template<unsigned VLength>
void SetPixelTypeInfo (const Offset< VLength > *)
 
virtual void SetSpacing (unsigned int i, double spacing)
 
template<typename TPixel >
void SetTypeInfo (const TPixel *)
 
virtual bool SupportsDimension (unsigned long dim)
 
virtual void SetFileName (const char *_arg)
 
virtual const char * GetFileName () const
 
virtual void SetDimensions (unsigned int i, unsigned int dim)
 
virtual void SetIORegion (ImageIORegion _arg)
 
virtual const ImageIORegionGetIORegion () const
 
virtual void SetPixelType (const IOPixelType _arg)
 
virtual IOPixelType GetPixelType () const
 
virtual void SetNumberOfComponents (unsigned int _arg)
 
virtual const unsigned int & GetNumberOfComponents () const
 
virtual void SetUseCompression (bool _arg)
 
virtual bool GetUseCompression () const
 
virtual void UseCompressionOn ()
 
virtual void UseCompressionOff ()
 
virtual void SetUseStreamedReading (bool _arg)
 
virtual bool GetUseStreamedReading () const
 
virtual void UseStreamedReadingOn ()
 
virtual void UseStreamedReadingOff ()
 
virtual void SetUseStreamedWriting (bool _arg)
 
virtual bool GetUseStreamedWriting () const
 
virtual void UseStreamedWritingOn ()
 
virtual void UseStreamedWritingOff ()
 
virtual void SetFileType (const FileType _arg)
 
virtual FileType GetFileType () const
 
void SetFileTypeToASCII ()
 
virtual void SetByteOrder (const ByteOrder _arg)
 
virtual ByteOrder GetByteOrder () const
 
void SetByteOrderToBigEndian ()
 
template<typename TPixel >
void SetPixelTypeInfo (const TPixel *)
 
template<typename TPixel >
void SetPixelTypeInfo (const RGBPixel< TPixel > *)
 
template<typename TPixel >
void SetPixelTypeInfo (const RGBAPixel< TPixel > *)
 
template<typename TPixel , unsigned VLength>
void SetPixelTypeInfo (const Vector< TPixel, VLength > *)
 
template<typename TPixel >
void SetPixelTypeInfo (const VariableLengthVector< TPixel > *)
 
template<typename TPixel , unsigned VLength>
void SetPixelTypeInfo (const CovariantVector< TPixel, VLength > *)
 
template<typename TPixel , unsigned VLength>
void SetPixelTypeInfo (const FixedArray< TPixel, VLength > *)
 
- Public Member Functions inherited from itk::LightProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual const bool & GetAbortGenerateData () const
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void UpdateOutputData ()
 
void UpdateProgress (float amount)
 
virtual void SetProgress (float _arg)
 
virtual const float & GetProgress () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const ITK_OVERRIDE
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) ITK_OVERRIDE
 
virtual void UnRegister () const ITK_OVERRIDE
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::ImageIOBase
static std::string GetComponentTypeAsString (IOComponentType)
 
static IOComponentType GetComponentTypeFromString (const std::string &typeString)
 
static std::string GetPixelTypeAsString (IOPixelType)
 
static IOPixelType GetPixelTypeFromString (const std::string &pixelString)
 
- Static Public Member Functions inherited from itk::LightProcessObject
static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Protected Member Functions

bool CanFindTIFFTag (unsigned int t)
 
int EvaluateImageAt (void *out, void *in)
 
void GetColor (int index, unsigned short *red, unsigned short *green, unsigned short *blue)
 
unsigned int GetFormat ()
 
void InitializeColors ()
 
void InternalWrite (const void *buffer)
 
virtual void PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
 
void ReadGenericImage (void *out, unsigned int, unsigned int height)
 
void * ReadRawByteFromTag (unsigned int t, unsigned int &value_count)
 
void ReadTwoSamplesPerPixelImage (void *out, unsigned int, unsigned int height)
 
 TIFFImageIO ()
 
 ~TIFFImageIO ()
 
- Protected Member Functions inherited from itk::ImageIOBase
void AddSupportedReadExtension (const char *extension)
 
void AddSupportedWriteExtension (const char *extension)
 
void ComputeStrides ()
 
virtual unsigned int GetActualNumberOfSplitsForWritingCanStreamWrite (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion) const
 
SizeType GetComponentStride () const
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter (void) const
 
virtual unsigned int GetPixelSize () const
 
SizeType GetRowStride () const
 
SizeType GetSliceStride () const
 
virtual ImageIORegion GetSplitRegionForWritingCanStreamWrite (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion) const
 
 ImageIOBase ()
 
virtual void OpenFileForReading (std::ifstream &inputStream, const std::string &filename, bool ascii=false)
 
virtual void OpenFileForWriting (std::ofstream &outputStream, const std::string &filename, bool truncate=true, bool ascii=false)
 
virtual void ReadBufferAsASCII (std::istream &os, void *buffer, IOComponentType ctype, SizeType numberOfBytesToBeRead)
 
bool ReadBufferAsBinary (std::istream &os, void *buffer, SizeType numberOfBytesToBeRead)
 
virtual void Reset (const bool freeDynamic=true)
 
void Resize (const unsigned int numDimensions, const unsigned int *dimensions)
 
virtual void WriteBufferAsASCII (std::ostream &os, const void *buffer, IOComponentType ctype, SizeType numberOfBytesToWrite)
 
 ~ImageIOBase ()
 
- Protected Member Functions inherited from itk::LightProcessObject
virtual void GenerateData ()
 
 LightProcessObject ()
 
 ~LightProcessObject ()
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Protected Attributes

int m_Compression
 
TIFFReaderInternal * m_InternalImage
 
int m_JPEGQuality
 
- Protected Attributes inherited from itk::ImageIOBase
ByteOrder m_ByteOrder
 
IOComponentType m_ComponentType
 
std::vector< SizeValueTypem_Dimensions
 
std::vector< std::vector
< double > > 
m_Direction
 
std::string m_FileName
 
FileType m_FileType
 
bool m_Initialized
 
ImageIORegion m_IORegion
 
unsigned int m_NumberOfComponents
 
unsigned int m_NumberOfDimensions
 
std::vector< double > m_Origin
 
IOPixelType m_PixelType
 
std::vector< double > m_Spacing
 
std::vector< SizeTypem_Strides
 
bool m_UseCompression
 
bool m_UseStreamedReading
 
bool m_UseStreamedWriting
 
- Protected Attributes inherited from itk::LightObject
InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 

Private Member Functions

void operator= (const Self &)
 
 TIFFImageIO (const Self &)
 

Private Attributes

unsigned short * m_ColorBlue
 
unsigned short * m_ColorGreen
 
unsigned short * m_ColorRed
 
unsigned int m_ImageFormat
 
int m_TotalColors
 

Additional Inherited Members

- Protected Types inherited from itk::LightObject
typedef int InternalReferenceCountType
 

Member Typedef Documentation

Definition at line 49 of file itkTIFFImageIO.h.

Standard class typedefs.

Definition at line 47 of file itkTIFFImageIO.h.

Definition at line 48 of file itkTIFFImageIO.h.

Member Enumeration Documentation

anonymous enum
Enumerator
NOFORMAT 
RGB_ 
GRAYSCALE 
PALETTE_RGB 
PALETTE_GRAYSCALE 
OTHER 

Definition at line 89 of file itkTIFFImageIO.h.

anonymous enum
Enumerator
NoCompression 
PackBits 
JPEG 
Deflate 
LZW 

Definition at line 92 of file itkTIFFImageIO.h.

Constructor & Destructor Documentation

itk::TIFFImageIO::TIFFImageIO ( )
protected
itk::TIFFImageIO::~TIFFImageIO ( )
protected
itk::TIFFImageIO::TIFFImageIO ( const Self )
private

Member Function Documentation

bool itk::TIFFImageIO::CanFindTIFFTag ( unsigned int  t)
protected
virtual bool itk::TIFFImageIO::CanReadFile ( const char *  )
virtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

virtual bool itk::TIFFImageIO::CanWriteFile ( const char *  )
virtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

virtual::itk::LightObject::Pointer itk::TIFFImageIO::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::LSMImageIO.

int itk::TIFFImageIO::EvaluateImageAt ( void *  out,
void *  in 
)
protected
void itk::TIFFImageIO::GetColor ( int  index,
unsigned short *  red,
unsigned short *  green,
unsigned short *  blue 
)
protected
unsigned int itk::TIFFImageIO::GetFormat ( )
protected
virtual int itk::TIFFImageIO::GetJPEGQuality ( ) const
virtual

Set/Get the level of quality for the output images if Compression is JPEG. Settings vary from 1 to 100. 100 is the highest quality. Default is 75

virtual const char* itk::TIFFImageIO::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

void itk::TIFFImageIO::InitializeColors ( )
protected
void itk::TIFFImageIO::InternalWrite ( const void *  buffer)
protected
static Pointer itk::TIFFImageIO::New ( )
static

Method for creation through the object factory.

void itk::TIFFImageIO::operator= ( const Self )
private
virtual void itk::TIFFImageIO::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

virtual void itk::TIFFImageIO::Read ( void *  buffer)
virtual

Reads the data from disk into the memory buffer provided.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

void itk::TIFFImageIO::ReadGenericImage ( void *  out,
unsigned  int,
unsigned int  height 
)
protected
virtual void itk::TIFFImageIO::ReadImageInformation ( )
virtual

Set the spacing and dimension information for the set filename.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

void* itk::TIFFImageIO::ReadRawByteFromTag ( unsigned int  t,
unsigned int &  value_count 
)
protected
virtual void itk::TIFFImageIO::ReadTiles ( void *  buffer)
virtual

Reads 3D data from tiled tiff.

void itk::TIFFImageIO::ReadTwoSamplesPerPixelImage ( void *  out,
unsigned  int,
unsigned int  height 
)
protected
virtual void itk::TIFFImageIO::ReadVolume ( void *  buffer)
virtual

Reads 3D data from multi-pages tiff.

void itk::TIFFImageIO::SetCompression ( int  compression)
inline

Definition at line 110 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToDeflate ( )
inline

Definition at line 107 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToJPEG ( )
inline

Definition at line 106 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToLZW ( )
inline

Definition at line 108 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToNoCompression ( )
inline

Definition at line 104 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToPackBits ( )
inline

Definition at line 105 of file itkTIFFImageIO.h.

virtual void itk::TIFFImageIO::SetJPEGQuality ( int  _arg)
virtual

Set/Get the level of quality for the output images if Compression is JPEG. Settings vary from 1 to 100. 100 is the highest quality. Default is 75

virtual void itk::TIFFImageIO::Write ( const void *  buffer)
virtual

Writes the data to disk from the memory buffer provided. Make sure that the IORegion has been set properly.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

virtual void itk::TIFFImageIO::WriteImageInformation ( )
virtual

Writes the spacing and dimensions of the image. Assumes SetFileName has been called with a valid file name.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

Member Data Documentation

unsigned short* itk::TIFFImageIO::m_ColorBlue
private

Definition at line 177 of file itkTIFFImageIO.h.

unsigned short* itk::TIFFImageIO::m_ColorGreen
private

Definition at line 176 of file itkTIFFImageIO.h.

unsigned short* itk::TIFFImageIO::m_ColorRed
private

Definition at line 175 of file itkTIFFImageIO.h.

int itk::TIFFImageIO::m_Compression
protected

Definition at line 168 of file itkTIFFImageIO.h.

unsigned int itk::TIFFImageIO::m_ImageFormat
private

Definition at line 179 of file itkTIFFImageIO.h.

TIFFReaderInternal* itk::TIFFImageIO::m_InternalImage
protected

Definition at line 166 of file itkTIFFImageIO.h.

int itk::TIFFImageIO::m_JPEGQuality
protected

Definition at line 169 of file itkTIFFImageIO.h.

int itk::TIFFImageIO::m_TotalColors
private

Definition at line 178 of file itkTIFFImageIO.h.


The documentation for this class was generated from the following file: