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itk::NarrowBandImageFilterBase< TInputImage, TOutputImage > Class Template Reference

#include <itkNarrowBandImageFilterBase.h>

+ Inheritance diagram for itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >:
+ Collaboration diagram for itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >:

Detailed Description

template<typename TInputImage, typename TOutputImage>
class itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >

This class implements a multi-threaded finite difference image to image solver that can be applied to an arbitrary list of pixels.

This class is intended as a common base class for classical narrowband solvers and manifold solvers. This base class implements a common memory management and multi-threaded architecture for applying a finite difference function to a list of pixels in an image. The specifics of narrowband solvers such as re-initialization and the use of land-mines are not implemented.
INPUTS
This filter takes an itk::Image as input. The appropriate type of input image is entirely determined by the application. As a rule, however, the input type is immediately converted to the output type before processing. This is because the input is not assumed to be a real value type and must be converted to signed, real values for the calculations.
OUTPUTS
The output is an itk::Image and is the solution of the pde. The embedding of the interface may vary with the application, but the usual ITK convention is that it is the zero level set in the output image.
IMPORTANT!
Read the documentation for FiniteDifferenceImageFilter before attempting to use this filter. The solver requires that you specify a FiniteDifferenceFunction to use for calculations. This is set using the method SetDifferenceFunction in the parent class.
REFERENCES
Sethian, J.A. Level Set Methods. Cambridge University Press. 1996.

Definition at line 68 of file itkNarrowBandImageFilterBase.h.

Classes

struct  NarrowBandImageFilterBaseThreadStruct
 
struct  ThreadRegionType
 

Public Types

typedef BandNode< IndexType,
PixelType
BandNodeType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::FiniteDifferenceFunctionType 
FiniteDifferenceFunctionType
 
typedef OutputImageType::IndexType IndexType
 
typedef Superclass::InputImageType InputImageType
 
typedef NarrowBandType::Iterator NarrowBandIterator
 
typedef NarrowBandType::Pointer NarrowBandPointer
 
typedef NarrowBand< BandNodeTypeNarrowBandType
 
typedef Superclass::OutputImageType OutputImageType
 
typedef Superclass::PixelType PixelType
 
typedef SmartPointer< SelfPointer
 
typedef NarrowBandType::RegionType RegionType
 
typedef NarrowBandImageFilterBase Self
 
typedef
FiniteDifferenceImageFilter
< TInputImage, TOutputImage > 
Superclass
 
typedef Superclass::TimeStepType TimeStepType
 
typedef OutputImageType::ValueType ValueType
 
- Public Types inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
FiniteDifferenceFunction
< TOutputImage > 
FiniteDifferenceFunctionType
 
typedef TInputImage InputImageType
 
typedef TInputImage::PixelType InputPixelType
 
typedef NumericTraits
< InputPixelType >::ValueType 
InputPixelValueType
 
typedef
FiniteDifferenceFunctionType::NeighborhoodScalesType 
NeighborhoodScalesType
 
typedef TOutputImage OutputImageType
 
typedef TOutputImage::PixelType OutputPixelType
 
typedef NumericTraits
< OutputPixelType >::ValueType 
OutputPixelValueType
 
typedef OutputPixelType PixelType
 
typedef SmartPointer< SelfPointer
 
typedef
FiniteDifferenceFunctionType::RadiusType 
RadiusType
 
typedef FiniteDifferenceImageFilter Self
 
typedef InPlaceImageFilter
< TInputImage, TOutputImage > 
Superclass
 
typedef
FiniteDifferenceFunctionType::TimeStepType 
TimeStepType
 
- Public Types inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImagePointer 
OutputImagePointer
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef Superclass::OutputImageType OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef InPlaceImageFilter Self
 
typedef ImageToImageFilter
< TInputImage, TOutputImage > 
Superclass
 
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource< TOutputImage > Superclass
 
- Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual void CopyInputToOutput ()
 
virtual void CreateNarrowBand ()
 
virtual const char * GetNameOfClass () const
 
float GetNarrowBandInnerRadius () const
 
float GetNarrowBandTotalRadius () const
 
void InsertNarrowBandNode (const IndexType &index)
 
void InsertNarrowBandNode (const IndexType &index, const PixelType &value, const signed char &nodestate)
 
virtual void SetNarrowBand (NarrowBandType *ptr)
 
virtual void SetIsoSurfaceValue (ValueType _arg)
 
virtual ValueType GetIsoSurfaceValue () const
 
void InsertNarrowBandNode (const BandNodeType &node)
 
void SetNarrowBandTotalRadius (const float &val)
 
void SetNarrowBandInnerRadius (const float &val)
 
- Public Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
virtual const
FiniteDifferenceFunctionType::Pointer
GetDifferenceFunction () const
 
virtual const IdentifierTypeGetElapsedIterations () const
 
virtual bool GetIsInitialized ()
 
virtual void SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)
 
virtual void SetIsInitialized (bool _arg)
 
void SetStateToInitialized ()
 
void SetStateToUninitialized ()
 
virtual void SetNumberOfIterations (IdentifierType _arg)
 
virtual const IdentifierTypeGetNumberOfIterations () const
 
virtual void SetUseImageSpacing (bool _arg)
 
virtual void UseImageSpacingOn ()
 
virtual void UseImageSpacingOff ()
 
virtual const bool & GetUseImageSpacing () const
 
virtual void SetMaximumRMSError (double _arg)
 
virtual const double & GetMaximumRMSError () const
 
virtual void SetRMSChange (double _arg)
 
virtual const double & GetRMSChange () const
 
virtual void SetManualReinitialization (bool _arg)
 
virtual const bool & GetManualReinitialization () const
 
virtual void ManualReinitializationOn ()
 
virtual void ManualReinitializationOff ()
 
- Public Member Functions inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
virtual bool CanRunInPlace () const
 
virtual void SetInPlace (bool _arg)
 
virtual bool GetInPlace () const
 
virtual void InPlaceOn ()
 
virtual void InPlaceOff ()
 
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageTypeGetInput (void) const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TInputImage *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput (void)
 
const OutputImageTypeGetOutput (void) const
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) ITK_OVERRIDE
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
NameArray GetInputNames () const
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArray GetOutputs ()
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual LightObject::Pointer CreateAnother () const ITK_OVERRIDE
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const ITK_OVERRIDE
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) ITK_OVERRIDE
 
virtual void UnRegister () const ITK_OVERRIDE
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Attributes

static const unsigned int ImageDimension = Superclass::ImageDimension
 
- Static Public Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
static const unsigned int ImageDimension = OutputImageType::ImageDimension
 
- Static Public Attributes inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 

Protected Member Functions

void ClearNarrowBand ()
 
virtual void GenerateData ()
 
void GetSplitRegion (const vcl_size_t &i, ThreadRegionType &splitRegion)
 
virtual void Initialize ()
 
virtual void InitializeIteration ()
 
 NarrowBandImageFilterBase ()
 
virtual void PostProcessOutput ()
 
void PrintSelf (std::ostream &os, Indent indent) const
 
void WaitForAll ()
 
virtual ~NarrowBandImageFilterBase ()
 
- Protected Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
 FiniteDifferenceImageFilter ()
 
virtual void GenerateInputRequestedRegion ()
 
virtual bool Halt ()
 
virtual TimeStepType ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const
 
virtual void SetElapsedIterations (IdentifierType _arg)
 
virtual bool ThreadedHalt (void *)
 
virtual ~FiniteDifferenceImageFilter ()
 
- Protected Member Functions inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
virtual void AllocateOutputs ()
 
virtual bool GetRunningInPlace () const
 
 InPlaceImageFilter ()
 
virtual void ReleaseInputs ()
 
 ~InPlaceImageFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation ()
 
 ~ImageToImageFilter ()
 
void PushBackInput (const DataObject *input)
 
void PushFrontInput (const DataObject *input)
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
 
virtual void BeforeThreadedGenerateData ()
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter (void) const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
void SetRequiredInputNames (const NameArray &)
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Protected Attributes

Barrier::Pointer m_Barrier
 
ValueType m_IsoSurfaceValue
 
NarrowBandPointer m_NarrowBand
 
std::vector< RegionTypem_RegionList
 
IdentifierType m_ReinitializationFrequency
 
IdentifierType m_Step
 
bool m_Touched
 
std::vector< bool > m_TouchedForThread
 
- Protected Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
IdentifierType m_ElapsedIterations
 
bool m_IsInitialized
 
bool m_ManualReinitialization
 
double m_MaximumRMSError
 
IdentifierType m_NumberOfIterations
 
double m_RMSChange
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 

Private Member Functions

virtual void AllocateUpdateBuffer ()
 
virtual void ApplyUpdate (const TimeStepType &)
 
virtual TimeStepType CalculateChange ()
 
 NarrowBandImageFilterBase (const Self &)
 
void operator= (const Self &)
 
virtual void ThreadedApplyUpdate (const TimeStepType &dt, const ThreadRegionType &regionToProcess, ThreadIdType threadId)
 
virtual TimeStepType ThreadedCalculateChange (const ThreadRegionType &regionToProcess, ThreadIdType threadId)
 
virtual void ThreadedIterate (void *arg, ThreadIdType threadId)
 

Static Private Member Functions

static ITK_THREAD_RETURN_TYPE IterateThreaderCallback (void *arg)
 

Additional Inherited Members

- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 
- Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Protected Types inherited from itk::LightObject
typedef int InternalReferenceCountType
 
- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 

Member Typedef Documentation

template<typename TInputImage, typename TOutputImage>
typedef BandNode< IndexType, PixelType > itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::BandNodeType

This is the storage type for the nodes on the narrow band.

Definition at line 106 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef SmartPointer< const Self > itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ConstPointer

Definition at line 77 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef Superclass::FiniteDifferenceFunctionType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::FiniteDifferenceFunctionType

Definition at line 85 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef OutputImageType::IndexType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::IndexType

The index type for the output image.

Definition at line 99 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef Superclass::InputImageType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InputImageType

Typedefs from the superclass

Definition at line 80 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef NarrowBandType::Iterator itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::NarrowBandIterator

Definition at line 112 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef NarrowBandType::Pointer itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::NarrowBandPointer

Definition at line 110 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef NarrowBand< BandNodeType > itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::NarrowBandType

The list type for storing the narrow band.

Definition at line 109 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef Superclass::OutputImageType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::OutputImageType

Definition at line 84 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef Superclass::PixelType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::PixelType

The pixel type of the output image will be used in computations. Inherited from the superclass.

Definition at line 93 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef SmartPointer< Self > itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::Pointer

Definition at line 76 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef NarrowBandType::RegionType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::RegionType

Definition at line 111 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef NarrowBandImageFilterBase itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::Self

Standard class typedefs

Definition at line 74 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef FiniteDifferenceImageFilter< TInputImage, TOutputImage > itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::Superclass

Definition at line 75 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef Superclass::TimeStepType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::TimeStepType

The value type of a time step. Inherited from the superclass.

Definition at line 96 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
typedef OutputImageType::ValueType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ValueType

The data type used in numerical computations. Derived from the output image type.

Definition at line 103 of file itkNarrowBandImageFilterBase.h.

Constructor & Destructor Documentation

template<typename TInputImage, typename TOutputImage>
itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::NarrowBandImageFilterBase ( )
inlineprotected

Definition at line 212 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
virtual itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::~NarrowBandImageFilterBase ( )
inlineprotectedvirtual

Definition at line 224 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::NarrowBandImageFilterBase ( const Self )
private

Member Function Documentation

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::AllocateUpdateBuffer ( )
inlineprivatevirtual

This method allocates a temporary update container in the subclass.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Definition at line 306 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ApplyUpdate ( const TimeStepType dt)
inlineprivatevirtual

This method is defined by a subclass to apply changes to the output from an update buffer and a time step value "dt".

Parameters
dtTime step value.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Definition at line 323 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
virtual TimeStepType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::CalculateChange ( )
inlineprivatevirtual

This method is defined by a subclass to populate an update buffer with changes for the pixels in the output. It returns a time step value to be used for the update.

Returns
A time step to use in updating the output with the changes calculated from this method.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Definition at line 331 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ClearNarrowBand ( )
protected
template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::CopyInputToOutput ( )
virtual

This method can be defined in subclasses as needed to copy the input to the output. See DenseFiniteDifferenceImageFilter for an implementation.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::CreateNarrowBand ( )
inlinevirtual

This is the virtual method called by Initialize to set the band of operation. It is left to the subclasses to define this functionality. This function can make use of above InsertNarrowBandNode function to create a band.

Reimplemented in itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, TOutputImage >, and itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType, TInputImage::ImageDimension > >.

Definition at line 198 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GenerateData ( )
protectedvirtual
template<typename TInputImage, typename TOutputImage>
virtual ValueType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetIsoSurfaceValue ( ) const
virtual

Set/Get IsoSurfaceValue to use in the input image

template<typename TInputImage, typename TOutputImage>
virtual const char* itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetNameOfClass ( ) const
virtual
template<typename TInputImage, typename TOutputImage>
float itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetNarrowBandInnerRadius ( ) const
inline

Get the narrow band inner radius.

Definition at line 188 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
float itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetNarrowBandTotalRadius ( ) const
inline

Get the narrow band total radius.

Definition at line 170 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetSplitRegion ( const vcl_size_t &  i,
ThreadRegionType splitRegion 
)
protected

This function returns a single region (of the narrow band list) for use in multi-threading

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::Initialize ( )
protectedvirtual

This function clears the existing narrow band, calls CreateNarrowBand to create a band, and calls the SplitRegions function of NarrowBand to pre-partition the band for multi-threading.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InitializeIteration ( )
protectedvirtual
template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InsertNarrowBandNode ( const BandNodeType node)
inline

Root Mean Square Change between successive iterations This function is used to insert a pixel index into the narrow band The entire narrow band can be constructed using this method. Usually, however, the narrow band is initialized and reinitialized automatically by the subclass.

Definition at line 126 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InsertNarrowBandNode ( const IndexType index)
inline

Definition at line 133 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InsertNarrowBandNode ( const IndexType index,
const PixelType value,
const signed char &  nodestate 
)
inline

Definition at line 142 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
static ITK_THREAD_RETURN_TYPE itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::IterateThreaderCallback ( void *  arg)
staticprivate

This method gives support for a multithread iterative scheme.

template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::operator= ( const Self )
private
template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::PostProcessOutput ( )
protectedvirtual

This method allows deallocation of data and further post processing

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, TOutputImage >, and itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType, TInputImage::ImageDimension > >.

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetIsoSurfaceValue ( ValueType  _arg)
virtual

Set/Get IsoSurfaceValue to use in the input image

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetNarrowBand ( NarrowBandType ptr)
inlinevirtual

Definition at line 200 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetNarrowBandInnerRadius ( const float &  val)
inline

Set the narrow band inner radius. The inner radius is the safe are where the level set can be computed. The default value is 1.

Definition at line 177 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetNarrowBandTotalRadius ( const float &  val)
inline

Set the narrow band total radius. The narrow band width will be twice this value (positive and negative distance to the zero level set). The default value is 3.

Definition at line 159 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ThreadedApplyUpdate ( const TimeStepType dt,
const ThreadRegionType regionToProcess,
ThreadIdType  threadId 
)
privatevirtual

This method applies changes from the m_NarrowBand to the output using the ThreadedApplyUpdate() method and a multithreading mechanism. "dt" is the time step to use for the update of each pixel.

template<typename TInputImage, typename TOutputImage>
virtual TimeStepType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ThreadedCalculateChange ( const ThreadRegionType regionToProcess,
ThreadIdType  threadId 
)
privatevirtual

This method populates m_NarrowBand with changes for each pixel in the output using the ThreadedCalculateChange() method and a multithreading mechanism. Returns value is a time step to be used for the update.

template<typename TInputImage, typename TOutputImage>
virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ThreadedIterate ( void *  arg,
ThreadIdType  threadId 
)
privatevirtual

This method is a thread implementation of the iterative scheme implemented in itkFiniteDifferenceImageFilter::GenerateData. It relies on ThreadedApplyUpdate and ThreadedCalculateChange to update the solution at every iteration.

template<typename TInputImage, typename TOutputImage>
void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::WaitForAll ( )
protected

Thread synchronization methods.

Member Data Documentation

template<typename TInputImage, typename TOutputImage>
const unsigned int itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ImageDimension = Superclass::ImageDimension
static

Dimensionality of input and output data is assumed to be the same. It is inherited from the superclass.

Definition at line 89 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
Barrier::Pointer itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_Barrier
protected
template<typename TInputImage, typename TOutputImage>
ValueType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_IsoSurfaceValue
protected
template<typename TInputImage, typename TOutputImage>
NarrowBandPointer itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_NarrowBand
protected
template<typename TInputImage, typename TOutputImage>
std::vector< RegionType > itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_RegionList
protected

A list of subregions of the narrowband which are passed to each thread for parallel processing.

Definition at line 243 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>
IdentifierType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_ReinitializationFrequency
protected
template<typename TInputImage, typename TOutputImage>
IdentifierType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_Step
protected
template<typename TInputImage, typename TOutputImage>
bool itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_Touched
protected
template<typename TInputImage, typename TOutputImage>
std::vector< bool > itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_TouchedForThread
protected

Definition at line 282 of file itkNarrowBandImageFilterBase.h.


The documentation for this class was generated from the following file: