ITK  4.6.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Types | Protected Member Functions | Private Member Functions | Private Attributes | List of all members
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage > Class Template Reference

#include <itkLesionSegmentationImageFilter8.h>

+ Inheritance diagram for itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >:
+ Collaboration diagram for itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >

Definition at line 45 of file itkLesionSegmentationImageFilter8.h.

Public Types

typedef
CannyEdgesFeatureGenerator
< ImageDimension
CannyEdgesFeatureGeneratorType
 
typedef SmartPointer< const SelfConstPointer
 
typedef TInputImage::IndexType IndexType
 
typedef TInputImage::PixelType InputImagePixelType
 
typedef TInputImage InputImageType
 
typedef TOutputImage::PixelType OutputImagePixelType
 
typedef TOutputImage::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef
SeedSpatialObjectType::PointListType 
PointListType
 
typedef TOutputImage::RegionType RegionType
 
typedef
itk::LandmarkSpatialObject
< ImageDimension
SeedSpatialObjectType
 
typedef
LesionSegmentationImageFilter8 
Self
 
typedef
CannyEdgesFeatureGeneratorType::SigmaArrayType 
SigmaArrayType
 
typedef InputImageType::SpacingType SpacingType
 
typedef ImageToImageFilter
< TInputImage, TOutputImage > 
Superclass
 
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource< TOutputImage > Superclass
 
- Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual void GenerateInputRequestedRegion () throw (InvalidRequestedRegionError)
 
virtual const char * GetNameOfClass () const
 
PointListType GetSeeds ()
 
const char * GetStatusMessage () const
 
void ProgressUpdate (Object *caller, const EventObject &event)
 
virtual void SetAbortGenerateData (const bool)
 
void SetSeeds (PointListType p)
 
virtual void SetSigma (SigmaArrayType sigmas)
 
 typedef (Concept::HasNumericTraits< InputImagePixelType >) InputHasNumericTraitsCheck
 
 typedef (Concept::HasNumericTraits< OutputImagePixelType >) OutputHasNumericTraitsCheck
 
 typedef (Concept::SameDimension< ImageDimension, OutputImageDimension >) SameDimensionCheck
 
 typedef (Concept::IsFloatingPoint< OutputImagePixelType >) OutputIsFloatingPointCheck
 
virtual void SetRegionOfInterest (RegionType _arg)
 
virtual RegionType GetRegionOfInterest ()
 
virtual void SetSigmoidBeta (double _arg)
 
virtual double GetSigmoidBeta ()
 
virtual void SetResampleThickSliceData (bool _arg)
 
virtual bool GetResampleThickSliceData ()
 
virtual void ResampleThickSliceDataOn ()
 
virtual void ResampleThickSliceDataOff ()
 
virtual void SetAnisotropyThreshold (double _arg)
 
virtual double GetAnisotropyThreshold ()
 
virtual void SetUseVesselEnhancingDiffusion (bool)
 
virtual void UseVesselEnhancingDiffusionOn ()
 
virtual void UseVesselEnhancingDiffusionOff ()
 
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageTypeGetInput (void) const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TInputImage *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput (void)
 
const OutputImageTypeGetOutput (void) const
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) ITK_OVERRIDE
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
NameArray GetInputNames () const
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArray GetOutputs ()
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const ITK_OVERRIDE
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) ITK_OVERRIDE
 
virtual void UnRegister () const ITK_OVERRIDE
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static const unsigned int ImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 

Protected Types

typedef MemberCommand< SelfCommandType
 
typedef
RegionOfInterestImageFilter
< InputImageType,
InputImageType
CropFilterType
 
typedef
MinimumFeatureAggregator
< ImageDimension
FeatureAggregatorType
 
typedef ImageSpatialObject
< ImageDimension,
InputImagePixelType
InputImageSpatialObjectType
 
typedef
IsotropicResamplerImageFilter
< InputImageType,
InputImageType
IsotropicResamplerType
 
typedef
LesionSegmentationMethod
< ImageDimension
LesionSegmentationMethodType
 
typedef
LungWallFeatureGenerator
< ImageDimension
LungWallGeneratorType
 
typedef
SegmentationModuleType::OutputSpatialObjectType 
OutputSpatialObjectType
 
typedef
FastMarchingAndGeodesicActiveContourLevelSetSegmentationModule
< ImageDimension
SegmentationModuleType
 
typedef
SigmoidFeatureGenerator
< ImageDimension
SigmoidFeatureGeneratorType
 
typedef RegionType::SizeType SizeType
 
typedef SizeType::SizeValueType SizeValueType
 
typedef
SegmentationModuleType::SpatialObjectType 
SpatialObjectType
 
typedef
SatoVesselnessSigmoidFeatureGenerator
< ImageDimension
VesselnessGeneratorType
 
- Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Protected Types inherited from itk::LightObject
typedef int InternalReferenceCountType
 

Protected Member Functions

void GenerateData ()
 
virtual void GenerateOutputInformation ()
 
 LesionSegmentationImageFilter8 ()
 
 LesionSegmentationImageFilter8 (const Self &)
 
void PrintSelf (std::ostream &os, Indent indent) const
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation ()
 
 ~ImageToImageFilter ()
 
void PushBackInput (const DataObject *input)
 
void PushFrontInput (const DataObject *input)
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void BeforeThreadedGenerateData ()
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter (void) const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
void SetRequiredInputNames (const NameArray &)
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

virtual ~LesionSegmentationImageFilter8 ()
 

Private Attributes

double m_AnisotropyThreshold
 
CannyEdgesFeatureGeneratorType::Pointer m_CannyEdgesFeatureGenerator
 
CommandType::Pointer m_CommandObserver
 
CropFilterType::Pointer m_CropFilter
 
double m_FastMarchingDistanceFromSeeds
 
double m_FastMarchingStoppingTime
 
FeatureAggregatorType::Pointer m_FeatureAggregator
 
InputImageSpatialObjectType::Pointer m_InputSpatialObject
 
IsotropicResamplerType::Pointer m_IsotropicResampler
 
LesionSegmentationMethodType::Pointer m_LesionSegmentationMethod
 
LungWallGeneratorType::Pointer m_LungWallFeatureGenerator
 
RegionType m_RegionOfInterest
 
bool m_ResampleThickSliceData
 
SeedSpatialObjectType::PointListType m_Seeds
 
SegmentationModuleType::Pointer m_SegmentationModule
 
double m_SigmoidBeta
 
SigmoidFeatureGeneratorType::Pointer m_SigmoidFeatureGenerator
 
std::string m_StatusMessage
 
bool m_UserSpecifiedSigmas
 
VesselnessGeneratorType::Pointer m_VesselnessFeatureGenerator
 

Additional Inherited Members

- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 

Member Typedef Documentation

template<class TInputImage , class TOutputImage >
typedef CannyEdgesFeatureGenerator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CannyEdgesFeatureGeneratorType

Definition at line 84 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef MemberCommand< Self > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CommandType
protected

Definition at line 181 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef SmartPointer<const Self> itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ConstPointer

Definition at line 59 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef RegionOfInterestImageFilter< InputImageType, InputImageType > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CropFilterType
protected

Definition at line 174 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef MinimumFeatureAggregator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::FeatureAggregatorType
protected

Definition at line 172 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef TInputImage::IndexType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::IndexType

Definition at line 64 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef TInputImage::PixelType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImagePixelType

Define pixel types.

Definition at line 62 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef ImageSpatialObject< ImageDimension, InputImagePixelType > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImageSpatialObjectType
protected

Definition at line 177 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef TInputImage itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImageType

Image typedef support

Definition at line 54 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef IsotropicResamplerImageFilter< InputImageType, InputImageType > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::IsotropicResamplerType
protected

Definition at line 178 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef LesionSegmentationMethod< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationMethodType
protected

Definition at line 168 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef LungWallFeatureGenerator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LungWallGeneratorType
protected

Definition at line 170 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef TOutputImage::PixelType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImagePixelType

Definition at line 63 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef TOutputImage::RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageRegionType

Typedef to describe the output image region type.

Definition at line 68 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef TOutputImage itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageType

Definition at line 55 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef SegmentationModuleType::OutputSpatialObjectType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputSpatialObjectType
protected

Definition at line 176 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef SmartPointer<Self> itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Pointer

SmartPointer typedef support

Definition at line 58 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef SeedSpatialObjectType::PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::PointListType

Definition at line 138 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef TOutputImage::RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::RegionType

Definition at line 72 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef itk::LandmarkSpatialObject< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SeedSpatialObjectType

Definition at line 134 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef FastMarchingAndGeodesicActiveContourLevelSetSegmentationModule< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SegmentationModuleType
protected

Definition at line 173 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef LesionSegmentationImageFilter8 itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Self

Standard "Self" & Superclass typedef.

Definition at line 50 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef CannyEdgesFeatureGeneratorType::SigmaArrayType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SigmaArrayType

Definition at line 85 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef SigmoidFeatureGenerator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SigmoidFeatureGeneratorType
protected

Definition at line 171 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef RegionType::SizeType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SizeType
protected

Definition at line 179 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef SizeType::SizeValueType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SizeValueType
protected

Definition at line 180 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef InputImageType::SpacingType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SpacingType

Definition at line 65 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef SegmentationModuleType::SpatialObjectType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SpatialObjectType
protected

Definition at line 175 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef ImageToImageFilter<TInputImage, TOutputImage> itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Superclass

Definition at line 51 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
typedef SatoVesselnessSigmoidFeatureGenerator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::VesselnessGeneratorType
protected

Definition at line 169 of file itkLesionSegmentationImageFilter8.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationImageFilter8 ( )
protected
template<class TInputImage , class TOutputImage >
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationImageFilter8 ( const Self )
inlineprotected

Definition at line 161 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
virtual itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::~LesionSegmentationImageFilter8 ( )
inlineprivatevirtual

Definition at line 185 of file itkLesionSegmentationImageFilter8.h.

Member Function Documentation

template<class TInputImage , class TOutputImage >
virtual::itk::LightObject::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TInputImage , class TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateData ( )
protectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See Also
ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateInputRequestedRegion ( )
throw (InvalidRequestedRegionError
)
virtual

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See Also
ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateOutputInformation ( )
protectedvirtual

Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented from itk::ProcessObject.

template<class TInputImage , class TOutputImage >
virtual double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetAnisotropyThreshold ( )
virtual

If ResampleThickSliceData is ON, set the maximum anisotropy. Defauls to twice the minimum spacing of the data. That will mean that 0.7 x 0.7 x 1.25 mm CT data will not be resampled. However 0.7 x 0.7 x 2.5 mm CT data will be resampled to 0.7 x 0.7 x 1.25 mm thick slices. Values less than 1.0 result in supersampling of the data. A value of 1 results in Isotropic resampling of the data.

template<class TInputImage , class TOutputImage >
virtual const char* itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >
virtual RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetRegionOfInterest ( )
virtual

End concept checking Set the ROI

template<class TInputImage , class TOutputImage >
virtual bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetResampleThickSliceData ( )
virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<class TInputImage , class TOutputImage >
PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSeeds ( )
inline
template<class TInputImage , class TOutputImage >
virtual double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSigmoidBeta ( )
virtual

Set the beta for the sigmoid intensity feature

template<class TInputImage , class TOutputImage >
const char* itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetStatusMessage ( ) const
inline
template<class TInputImage , class TOutputImage >
static Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::New ( )
static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ProgressUpdate ( Object caller,
const EventObject event 
)

Report progress

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ResampleThickSliceDataOff ( )
virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ResampleThickSliceDataOn ( )
virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetAbortGenerateData ( const bool  )
virtual

Override the superclass implementation so as to set the flag on all the filters within our lesion segmentation pipeline

Reimplemented from itk::ProcessObject.

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetAnisotropyThreshold ( double  _arg)
virtual

If ResampleThickSliceData is ON, set the maximum anisotropy. Defauls to twice the minimum spacing of the data. That will mean that 0.7 x 0.7 x 1.25 mm CT data will not be resampled. However 0.7 x 0.7 x 2.5 mm CT data will be resampled to 0.7 x 0.7 x 1.25 mm thick slices. Values less than 1.0 result in supersampling of the data. A value of 1 results in Isotropic resampling of the data.

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetRegionOfInterest ( RegionType  _arg)
virtual

End concept checking Set the ROI

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetResampleThickSliceData ( bool  _arg)
virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<class TInputImage , class TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSeeds ( PointListType  p)
inline
template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSigma ( SigmaArrayType  sigmas)
virtual
template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSigmoidBeta ( double  _arg)
virtual

Set the beta for the sigmoid intensity feature

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetUseVesselEnhancingDiffusion ( bool  )
virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

template<class TInputImage , class TOutputImage >
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::typedef ( Concept::HasNumericTraits< InputImagePixelType )

Begin concept checking This class requires InputHasNumericTraitsCheck in the form of (Concept::HasNumericTraits<InputImagePixelType>)

template<class TInputImage , class TOutputImage >
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::typedef ( Concept::HasNumericTraits< OutputImagePixelType )

This class requires OutputHasNumericTraitsCheck in the form of (Concept::HasNumericTraits<OutputImagePixelType>)

template<class TInputImage , class TOutputImage >
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::typedef ( Concept::SameDimension< ImageDimension, OutputImageDimension )

This class requires SameDimensionCheck in the form of (Concept::SameDimension<ImageDimension, OutputImageDimension>)

template<class TInputImage , class TOutputImage >
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::typedef ( Concept::IsFloatingPoint< OutputImagePixelType )

This class requires OutputIsFloatingPointCheck in the form of (Concept::IsFloatingPoint<OutputImagePixelType>)

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::UseVesselEnhancingDiffusionOff ( )
virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

template<class TInputImage , class TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::UseVesselEnhancingDiffusionOn ( )
virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

Member Data Documentation

template<class TInputImage , class TOutputImage >
const unsigned int itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ImageDimension = TInputImage::ImageDimension
static

ImageDimension constant

Definition at line 79 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_AnisotropyThreshold
private

Definition at line 206 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
CannyEdgesFeatureGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CannyEdgesFeatureGenerator
private

Definition at line 195 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
CommandType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CommandObserver
private

Definition at line 200 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
CropFilterType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CropFilter
private

Definition at line 198 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FastMarchingDistanceFromSeeds
private

Definition at line 189 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FastMarchingStoppingTime
private

Definition at line 188 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
FeatureAggregatorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FeatureAggregator
private

Definition at line 196 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
InputImageSpatialObjectType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_InputSpatialObject
private

Definition at line 204 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
IsotropicResamplerType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_IsotropicResampler
private

Definition at line 199 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
LesionSegmentationMethodType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_LesionSegmentationMethod
private

Definition at line 191 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
LungWallGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_LungWallFeatureGenerator
private

Definition at line 192 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_RegionOfInterest
private

Definition at line 201 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_ResampleThickSliceData
private

Definition at line 205 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
SeedSpatialObjectType::PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_Seeds
private
template<class TInputImage , class TOutputImage >
SegmentationModuleType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SegmentationModule
private

Definition at line 197 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SigmoidBeta
private

Definition at line 185 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
SigmoidFeatureGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SigmoidFeatureGenerator
private

Definition at line 194 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
std::string itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_StatusMessage
private
template<class TInputImage , class TOutputImage >
bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_UserSpecifiedSigmas
private

Definition at line 207 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
VesselnessGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_VesselnessFeatureGenerator
private

Definition at line 193 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >
const unsigned int itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension
static

Definition at line 82 of file itkLesionSegmentationImageFilter8.h.


The documentation for this class was generated from the following file: