#include <itkAttributeMorphologyBaseImageFilter.h>

Inheritance diagram for itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >:

Collaboration diagram for itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >:

Classes
class	ComparePixStruct
class	GreyAndPos

Public Types
typedef TAttribute	AttributeType
typedef SmartPointer< const Self >	ConstPointer
typedef TInputImage::IndexType	IndexType
typedef Superclass::InputImagePointer	InputImagePointer
typedef TInputImage	InputImageType
typedef TInputImage::InternalPixelType	InputInternalPixelType
typedef TInputImage::PixelType	InputPixelType
typedef std::list< IndexType >	ListType
typedef TInputImage::OffsetType	OffsetType
typedef TOutputImage	OutputImageType
typedef TOutputImage::InternalPixelType	OutputInternalPixelType
typedef TOutputImage::PixelType	OutputPixelType
typedef SmartPointer< Self >	Pointer
typedef TOutputImage::RegionType	RegionType
typedef AttributeMorphologyBaseImageFilter	Self
typedef TInputImage::SizeType	SizeType
typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::RegionType	InputImageRegionType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
Public Types inherited from itk::ImageSource< TOutputImage >
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
typedef OutputImageType::Pointer	OutputImagePointer
Public Types inherited from itk::ProcessObject
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef std::vector < DataObjectIdentifierType >	NameArray
Public Types inherited from itk::Object
Public Types inherited from itk::LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const

virtual void	SetFullyConnected (bool _arg)
virtual const bool &	GetFullyConnected ()
virtual void	FullyConnectedOn ()
virtual void	FullyConnectedOff ()
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput (void) const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const TInputImage *image)
Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput (void)
const OutputImageType *	GetOutput (void) const
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual const bool &	GetAbortGenerateData ()
NameArray	GetInputNames () const
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
virtual const float &	GetProgress ()
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	SetProgress (float _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
DataObjectPointerArray	GetInputs ()
DataObjectPointerArray	GetOutputs ()
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension = TInputImage::ImageDimension
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::ImageSource< TOutputImage >

Protected Member Functions
	AttributeMorphologyBaseImageFilter (const Self &)
void	EnlargeOutputRequestedRegion (DataObject *)
void	GenerateData ()
void	GenerateInputRequestedRegion ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual	~AttributeMorphologyBaseImageFilter ()
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
virtual void	VerifyInputInformation ()
	~ImageToImageFilter ()
void	PushBackInput (const DataObject *input)
void	PushFrontInput (const DataObject *input)
Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	BeforeThreadedGenerateData ()
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual	~ImageSource ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()
bool	IsIndexedName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType	MakeNameFromIndex (DataObjectPointerArraySizeType) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Protected Attributes
AttributeType	m_AttributeValuePerPixel

Private Types
typedef std::vector < OffsetValueType >	OffsetDirectVecType
typedef std::vector< OffsetType >	OffsetVecType

Private Member Functions
bool	Criterion (OffsetValueType x, OffsetValueType y)
OffsetValueType	FindRoot (OffsetValueType x)
void	MakeSet (OffsetValueType x)
void	SetupOffsetVec (OffsetDirectVecType &PosOffsets, OffsetVecType &Offsets)
void	Union (OffsetValueType n, OffsetValueType p)

Private Attributes
AttributeType *	m_AuxData
bool	m_FullyConnected
AttributeType	m_Lambda
OffsetValueType *	m_Parent
InputPixelType *	m_Raw
GreyAndPos *	m_SortPixels

Static Private Attributes
static const OffsetValueType	ACTIVE = -2
static const OffsetValueType	INACTIVE = -1
static const OffsetValueType	ROOT = -3
virtual void	SetLambda (AttributeType _arg)
virtual AttributeType	GetLambda () const
	AttributeMorphologyBaseImageFilter ()

Additional Inherited Members
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType

Detailed Description

template<class TInputImage, class TOutputImage, class TAttribute, class TFunction>
class itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >

Morphological opening by attributes.

This is the base class for morphology attribute operations. Attribute openings remove blobs according to criteria such as area. When applied to grayscale images it has the effect of trimming peaks based on area while leaving the rest of the image unchanged. It is possible to use attributes besides area, but no others are implemented yet. This filter uses some dodgy coding practices - most notably copying the image data to a linear buffer to allow direct implementation of the published algorithm. It should therefore be quite a good candidate to carry out tests of itk iterator performance with randomish access patterns.

This filter is implemented using the method of Wilkinson, "A comparison of algorithms for Connected set openings and Closings", A. Meijster and M. H. Wilkinson, PAMI, vol 24, no. 4, April 2002. Attempts at implementing the method from ISMM 2000 are also included, but operation appears incorrect. Check the ifdefs if you are interested.

This code was contributed in the Insight Journal paper

"Grayscale morphological attribute operations" by Beare R. http://hdl.handle.net/1926/1316 http://www.insight-journal.org/browse/publication/203

Author:: Richard Beare. Department of Medicine, Monash University, Melbourne, Australia.

Definition at line 63 of file itkAttributeMorphologyBaseImageFilter.h.