#include <itkNormalizedMutualInformationHistogramImageToImageMetric.h>
Inheritance diagram for itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >:
The type of Normalize Mutual Information implemented in this class is given by the equation
![\[ \frac{ H(A) + H(B) }{ H(A,B) } \]](form_62.png)
Where $ H(A) $ is the entropy of image $ A $, $ H(B) $ is the entropy of image $ B $, and $ H(A,B) $ is the joing entropy of images $ A $ and $ B $.
Details of this implementation can be found in the book
"Medical Image Registration" by Hajnal, Hill and Hawkes.
The book is available online at
http://www-ipg.umds.ac.uk/d.hill/hhh/
The implementation of this class corresponds to equation (30) in Chapter 3 of this book. Note that by slightly changing this class it will be trivial to compute the Normalized Mutual Information measures defined in equations (28) and (29) of the same book.
This class is templated over the type of the fixed and moving images to be compared.
Definition at line 56 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef SmartPointer<const Self> itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer |
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 64 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
typedef Superclass::ParametersValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType [inherited] |
Type used for representing point components
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 61 of file itkImageToImageMetric.h.
| typedef Superclass::DerivativeType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType |
Type of the derivative.
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 83 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef Superclass::FixedImageConstPointer itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 86 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
typedef Superclass::FixedImageConstPointer itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointerType [inherited] |
Definition at line 67 of file itkHistogramImageToImageMetric.h.
typedef FixedImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer [inherited] |
Definition at line 122 of file itkImageToImageMetric.h.
typedef SpatialObject< itkGetStaticConstMacro(FixedImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType [inherited] |
Type for the mask of the fixed image. Only pixels that are "inside" this mask will be considered for the computation of the metric
Definition at line 121 of file itkImageToImageMetric.h.
typedef Superclass::FixedImageType::PixelType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType [inherited] |
Definition at line 63 of file itkHistogramImageToImageMetric.h.
typedef FixedImageType::RegionType itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType [inherited] |
| typedef Superclass::FixedImageType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType |
Type of the fixed Image.
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 84 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
typedef GradientImageFilterType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer [inherited] |
Definition at line 110 of file itkImageToImageMetric.h.
typedef GradientRecursiveGaussianImageFilter< MovingImageType, GradientImageType > itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType [inherited] |
Definition at line 109 of file itkImageToImageMetric.h.
typedef SmartPointer<GradientImageType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer [inherited] |
Definition at line 106 of file itkImageToImageMetric.h.
typedef Image<GradientPixelType, itkGetStaticConstMacro(MovingImageDimension)> itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageType [inherited] |
Definition at line 105 of file itkImageToImageMetric.h.
| typedef Superclass::GradientPixelType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType |
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 80 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef HistogramType::FrequencyType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramFrequencyType |
Definition at line 91 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef HistogramType::Iterator itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramIteratorType |
Definition at line 92 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef HistogramType::MeasurementVectorType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramMeasurementVectorType |
Definition at line 94 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
typedef HistogramType::Pointer itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramPointer [inherited] |
Definition at line 77 of file itkHistogramImageToImageMetric.h.
typedef HistogramType::SizeType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramSizeType [inherited] |
Reimplemented in itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, and itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 76 of file itkHistogramImageToImageMetric.h.
| typedef Superclass::HistogramType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramType |
Typedefs for histogram. This should have been defined as Histogram<RealType,2> but a bug in VC++7 produced an internal compiler error with such declaration.
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 90 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
typedef Superclass::InputPointType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::InputPointType [inherited] |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 58 of file itkHistogramImageToImageMetric.h.
typedef InterpolatorType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer [inherited] |
Reimplemented in itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, and itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 114 of file itkImageToImageMetric.h.
typedef InterpolateImageFunction< MovingImageType, CoordinateRepresentationType > itk::ImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType [inherited] |
Type of the Interpolator Base class
Reimplemented in itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 97 of file itkImageToImageMetric.h.
typedef HistogramType::MeasurementVectorType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::MeasurementVectorType [inherited] |
Definition at line 75 of file itkHistogramImageToImageMetric.h.
| typedef Superclass::MeasureType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::MeasureType |
Type of the measure.
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 82 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef Superclass::MovingImageConstPointer itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 88 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
typedef Superclass::MovingImageConstPointer itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointerType [inherited] |
Definition at line 69 of file itkHistogramImageToImageMetric.h.
typedef MovingImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer [inherited] |
Definition at line 128 of file itkImageToImageMetric.h.
typedef SpatialObject< itkGetStaticConstMacro(MovingImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType [inherited] |
Type for the mask of the moving image. Only pixels that are "inside" this mask will be considered for the computation of the metric
Definition at line 127 of file itkImageToImageMetric.h.
typedef Superclass::MovingImageType::PixelType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType [inherited] |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 65 of file itkHistogramImageToImageMetric.h.
| typedef Superclass::MovingImageType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType |
Type of the moving Image.
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 85 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
typedef Superclass::OutputPointType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::OutputPointType [inherited] |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 59 of file itkHistogramImageToImageMetric.h.
typedef Superclass::ParametersType itk::ImageToImageMetric< TFixedImage, TMovingImage >::ParametersType [inherited] |
Type of the parameters.
Reimplemented from itk::SingleValuedCostFunction.
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 139 of file itkImageToImageMetric.h.
typedef double itk::CostFunction::ParametersValueType [inherited] |
ParametersType typedef. It defines a position in the optimization search space.
Definition at line 46 of file itkCostFunction.h.
| typedef SmartPointer<Self> itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::Pointer |
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 63 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef Superclass::RealType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::RealType |
Types transferred from the base class
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 71 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
typedef Array<double> itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ScalesType [inherited] |
The scales type.
Definition at line 121 of file itkHistogramImageToImageMetric.h.
| typedef NormalizedMutualInformationHistogramImageToImageMetric itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::Self |
Standard class typedefs.
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 61 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef HistogramImageToImageMetric<TFixedImage, TMovingImage> itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::Superclass |
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 62 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef Superclass::TransformJacobianType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType |
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 79 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef Superclass::TransformParametersType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType |
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 78 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef Superclass::TransformPointer itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer |
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 76 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| typedef Superclass::TransformType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformType |
Type of the Transform Base class
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 75 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::NormalizedMutualInformationHistogramImageToImageMetric | ( | ) | [inline, protected] |
Constructor is protected to ensure that New() function is used to create instances.
Definition at line 99 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| virtual itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::~NormalizedMutualInformationHistogramImageToImageMetric | ( | ) | [inline, protected, virtual] |
Constructor is protected to ensure that New() function is used to create instances.
Definition at line 100 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::NormalizedMutualInformationHistogramImageToImageMetric | ( | ) | [inline, protected] |
Constructor is protected to ensure that New() function is used to create instances.
Definition at line 99 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| virtual itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::~NormalizedMutualInformationHistogramImageToImageMetric | ( | ) | [inline, protected, virtual] |
Constructor is protected to ensure that New() function is used to create instances.
Definition at line 100 of file itkNormalizedMutualInformationHistogramImageToImageMetric.h.
| unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
| Command * | ||||
| ) | const [inherited] |
| unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
| Command * | ||||
| ) | [inherited] |
Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects
| static void itk::LightObject::BreakOnError | ( | ) | [static, inherited] |
This method is called when itkExceptionMacro executes. It allows the debugger to break on error.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradient | ( | ) | [virtual, inherited] |
Computes the gradient image and assigns it to m_GradientImage
Reimplemented in itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOff | ( | ) | [virtual, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOn | ( | ) | [virtual, inherited] |
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputeHistogram | ( | const TransformParametersType & | parameters, | |
| unsigned int | parameter, | |||
| double | step, | |||
| HistogramType & | histogram | |||
| ) | const [protected, inherited] |
Computes the joint histogram from the transformation parameters passed to the function.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputeHistogram | ( | const TransformParametersType & | parameters, | |
| HistogramType & | histogram | |||
| ) | const [protected, inherited] |
Computes the joint histogram from the transformation parameters passed to the function.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::CopyHistogram | ( | HistogramType & | target, | |
| HistogramType & | source | |||
| ) | const [protected, inherited] |
Copies a histogram.
| target | The target. | |
| source | The source. |
| virtual LightObject::Pointer itk::Object::CreateAnother | ( | ) | const [virtual, inherited] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LightObject.
| virtual void itk::Object::DebugOff | ( | ) | const [virtual, inherited] |
Turn debugging output off.
| virtual void itk::Object::DebugOn | ( | ) | const [virtual, inherited] |
Turn debugging output on.
| virtual void itk::LightObject::Delete | ( | ) | [virtual, inherited] |
Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.
| virtual MeasureType itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::EvaluateMeasure | ( | HistogramType & | histogram | ) | const [protected, virtual] |
Evaluates the normalized mutual information from the histogram.
Implements itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
| Command* itk::Object::GetCommand | ( | unsigned long | tag | ) | [inherited] |
Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.
| virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetComputeGradient | ( | ) | [virtual, inherited] |
| bool itk::Object::GetDebug | ( | ) | const [inherited] |
Get the value of the debug flag.
| virtual void itk::SingleValuedCostFunction::GetDerivative | ( | const ParametersType & | parameters, | |
| DerivativeType & | derivative | |||
| ) | const [pure virtual, inherited] |
This method returns the derivative of the cost function corresponding to the specified parameters.
Implemented in itk::Statistics::GoodnessOfFitMixtureModelCostFunction< TInputSample >.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative | ( | const TransformParametersType & | parameters, | |
| DerivativeType & | derivative | |||
| ) | const [inherited] |
Get the derivatives of the match measure.
| virtual double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivativeStepLength | ( | ) | [virtual, inherited] |
Returns the step length used to calculate the derivative.
| virtual const ScalesType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivativeStepLengthScales | ( | ) | [virtual, inherited] |
Returns the derivate step length scales.
| virtual const FixedImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImage | ( | ) | [virtual, inherited] |
Get the Fixed Image.
| virtual const FixedImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageMask | ( | ) | [virtual, inherited] |
| virtual const FixedImageRegionType& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageRegion | ( | ) | [virtual, inherited] |
Get the region over which the metric will be computed
| static bool itk::Object::GetGlobalWarningDisplay | ( | ) | [static, inherited] |
| virtual const GradientImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetGradientImage | ( | ) | [virtual, inherited] |
Get Gradient Image.
| virtual const HistogramPointer& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetHistogram | ( | ) | [virtual, inherited] |
Return the joint histogram. This is updated during every call to the GetValue() method. The histogram can for instance be used by itk::HistogramToImageFilter to plot the joint histogram.
| virtual const HistogramSizeType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetHistogramSize | ( | ) | [virtual, inherited] |
Gets the histogram size.
| virtual const InterpolatorType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetInterpolator | ( | ) | [virtual, inherited] |
Get a pointer to the Interpolator.
| const MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | const [inherited] |
| MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | [inherited] |
| virtual const MovingImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImage | ( | ) | [virtual, inherited] |
Get the Moving Image.
| virtual const MovingImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImageMask | ( | ) | [virtual, inherited] |
| virtual unsigned long itk::Object::GetMTime | ( | ) | const [virtual, inherited] |
Return this objects modified time.
Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.
Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().
| virtual const char* itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNameOfClass | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.
| unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfParameters | ( | void | ) | const [inline, virtual, inherited] |
Return the number of parameters required by the Transform
Implements itk::CostFunction.
Reimplemented in itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, and itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 200 of file itkImageToImageMetric.h.
| virtual const unsigned long& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfPixelsCounted | ( | ) | [virtual, inherited] |
Get the number of pixels considered in the computation.
| virtual const FixedImagePixelType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetPaddingValue | ( | ) | [virtual, inherited] |
Returns the padding value.
| virtual int itk::LightObject::GetReferenceCount | ( | ) | const [inline, virtual, inherited] |
Gets the reference count on this object.
Definition at line 98 of file itkLightObject.h.
| virtual const TransformType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetTransform | ( | ) | [virtual, inherited] |
Get a pointer to the Transform.
| virtual double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUpperBoundIncreaseFactor | ( | ) | [virtual, inherited] |
| virtual bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUsePaddingValue | ( | ) | [virtual, inherited] |
| virtual MeasureType itk::SingleValuedCostFunction::GetValue | ( | const ParametersType & | parameters | ) | const [pure virtual, inherited] |
This method returns the value of the cost function corresponding to the specified parameters.
Implemented in itk::Statistics::GoodnessOfFitMixtureModelCostFunction< TInputSample >.
| MeasureType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetValue | ( | const TransformParametersType & | parameters | ) | const [inherited] |
Get the value for single valued optimizers.
| virtual void itk::SingleValuedCostFunction::GetValueAndDerivative | ( | const ParametersType & | parameters, | |
| MeasureType & | value, | |||
| DerivativeType & | derivative | |||
| ) | const [inline, virtual, inherited] |
This method returns the value and derivative of the cost function corresponding to the specified parameters
Definition at line 71 of file itkSingleValuedCostFunction.h.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative | ( | const TransformParametersType & | parameters, | |
| MeasureType & | Value, | |||
| DerivativeType & | Derivative | |||
| ) | const [inherited] |
Get value and derivatives for multiple valued optimizers.
| static void itk::Object::GlobalWarningDisplayOff | ( | ) | [inline, static, inherited] |
| static void itk::Object::GlobalWarningDisplayOn | ( | ) | [inline, static, inherited] |
| bool itk::Object::HasObserver | ( | const EventObject & | event | ) | const [inherited] |
Return true if an observer is registered for this event.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::Initialize | ( | ) | throw (ExceptionObject) [virtual, inherited] |
Initializes the metric.
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Reimplemented in itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, and itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
| void itk::Object::InvokeEvent | ( | const EventObject & | ) | const [inherited] |
Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.
| void itk::Object::InvokeEvent | ( | const EventObject & | ) | [inherited] |
Call Execute on all the Commands observing this event id.
| itk::ImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro | ( | FixedImageDimension | , | |
| unsigned | int, | |||
| TFixedImage::ImageDimension | ||||
| ) | [inherited] |
Reimplemented in itk::GradientDifferenceImageToImageMetric< TFixedImage, TMovingImage >.
| itk::ImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro | ( | MovingImageDimension | , | |
| unsigned | int, | |||
| TMovingImage::ImageDimension | ||||
| ) | [inherited] |
Constants for the image dimensions
| virtual void itk::Object::Modified | ( | ) | const [virtual, inherited] |
Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.
Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, and itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >.
Referenced by itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::HistogramAlgorithmBase< TInputHistogram >::SetInputHistogram(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints1(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints2(), itk::NonUniformBSpline< TDimension >::SetSplineOrder(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().
| static Pointer itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::Object.
| void itk::LightObject::Print | ( | std::ostream & | os, | |
| Indent | indent = 0 | |||
| ) | const [inherited] |
Cause the object to print itself out.
Referenced by itk::WeakPointer< itk::ProcessObject >::Print().
| virtual void itk::LightObject::PrintHeader | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual, inherited] |
| bool itk::Object::PrintObservers | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, inherited] |
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual, inherited] |
PrintSelf funtion
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Reimplemented in itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, and itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
| virtual void itk::LightObject::PrintTrailer | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual, inherited] |
| virtual void itk::Object::Register | ( | ) | const [virtual, inherited] |
Increase the reference count (mark as used by another object).
Reimplemented from itk::LightObject.
| void itk::Object::RemoveAllObservers | ( | ) | [inherited] |
Remove all observers .
| void itk::Object::RemoveObserver | ( | unsigned long | tag | ) | [inherited] |
Remove the observer with this tag value.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetComputeGradient | ( | bool | _arg | ) | [virtual, inherited] |
Set/Get gradient computation.
| void itk::Object::SetDebug | ( | bool | debugFlag | ) | const [inherited] |
Set the value of the debug flag. A non-zero value turns debugging on.
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetDerivativeStepLength | ( | double | _arg | ) | [virtual, inherited] |
Sets the step length used to calculate the derivative.
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetDerivativeStepLengthScales | ( | ScalesType | _arg | ) | [virtual, inherited] |
Sets the derivative step length scales.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImage | ( | const FixedImageType * | _arg | ) | [virtual, inherited] |
Connect the Fixed Image.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageMask | ( | FixedImageMaskType * | _arg | ) | [virtual, inherited] |
Set/Get the fixed image mask.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageRegion | ( | FixedImageRegionType | _arg | ) | [virtual, inherited] |
Set the region over which the metric will be computed
| static void itk::Object::SetGlobalWarningDisplay | ( | bool | flag | ) | [static, inherited] |
This is a global flag that controls whether any debug, warning or error messages are displayed.
Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetHistogramSize | ( | HistogramSizeType | _arg | ) | [virtual, inherited] |
Sets the histogram size. Note this function must be called before Initialize().
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetInterpolator | ( | InterpolatorType * | _arg | ) | [virtual, inherited] |
Connect the Interpolator.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetLowerBound | ( | const MeasurementVectorType & | bound | ) | [inherited] |
Set the lower bounds of the intensities to be considered for computing the histogram. This option allows to focus the computation of the Metric in a particular range of intensities that correspond to features of interest.
| void itk::Object::SetMetaDataDictionary | ( | const MetaDataDictionary & | rhs | ) | [inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImage | ( | const MovingImageType * | _arg | ) | [virtual, inherited] |
Connect the Moving Image.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageMask | ( | MovingImageMaskType * | _arg | ) | [virtual, inherited] |
Set/Get the moving image mask.
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetPaddingValue | ( | FixedImagePixelType | _arg | ) | [virtual, inherited] |
The padding value.
| virtual void itk::Object::SetReferenceCount | ( | int | ) | [virtual, inherited] |
Sets the reference count (use with care)
Reimplemented from itk::LightObject.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetTransform | ( | TransformType * | _arg | ) | [virtual, inherited] |
Connect the Transform.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTransform | ( | TransformType * | transform | ) | [inherited] |
Define the transform and thereby the parameter space of the metric and the space of its derivatives
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetTransformParameters | ( | const ParametersType & | parameters | ) | const [inherited] |
Set the parameters defining the Transform.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUpperBound | ( | const MeasurementVectorType & | bound | ) | [inherited] |
Set the upper bounds of the intensities to be considered for computing the histogram. This option allows to focus the computation of the Metric in a particular range of intensities that correspond to features of interest.
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUpperBoundIncreaseFactor | ( | double | _arg | ) | [virtual, inherited] |
Factor to increase the upper bound for the samples in the histogram. Default value is 0.001
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUsePaddingValue | ( | bool | _arg | ) | [virtual, inherited] |
Set whether the padding value should be used to determine which pixels should be ignored when calculating the similarity measure. Those pixels in the fixed image which have the padding value will be ignored.
| virtual void itk::Object::UnRegister | ( | ) | const [virtual, inherited] |
Decrease the reference count (release by another object).
Reimplemented from itk::LightObject.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ComputeGradient [protected, inherited] |
Definition at line 220 of file itkImageToImageMetric.h.
FixedImageConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImage [protected, inherited] |
Definition at line 214 of file itkImageToImageMetric.h.
FixedImageMaskPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageMask [mutable, protected, inherited] |
Definition at line 223 of file itkImageToImageMetric.h.
GradientImagePointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_GradientImage [protected, inherited] |
Definition at line 221 of file itkImageToImageMetric.h.
HistogramSizeType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_HistogramSize [protected, inherited] |
The histogram size.
Definition at line 159 of file itkHistogramImageToImageMetric.h.
InterpolatorPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Interpolator [protected, inherited] |
Definition at line 218 of file itkImageToImageMetric.h.
MeasurementVectorType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_LowerBound [mutable, protected, inherited] |
The lower bound for samples in the histogram.
Definition at line 166 of file itkHistogramImageToImageMetric.h.
bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_LowerBoundSetByUser [protected, inherited] |
Boolean flag to indicate whether the user supplied lower bounds or whether they should be computed from the min of image intensities
Definition at line 176 of file itkHistogramImageToImageMetric.h.
MovingImageConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImage [protected, inherited] |
Definition at line 215 of file itkImageToImageMetric.h.
MovingImageMaskPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageMask [mutable, protected, inherited] |
Definition at line 224 of file itkImageToImageMetric.h.
unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfPixelsCounted [mutable, protected, inherited] |
Definition at line 212 of file itkImageToImageMetric.h.
volatile int itk::LightObject::m_ReferenceCount [mutable, protected, inherited] |
Number of uses of this object by other objects.
Definition at line 119 of file itkLightObject.h.
SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited] |
Mutex lock to protect modification to the reference count
Definition at line 122 of file itkLightObject.h.
TransformPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Transform [mutable, protected, inherited] |
Definition at line 217 of file itkImageToImageMetric.h.
MeasurementVectorType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UpperBound [mutable, protected, inherited] |
The upper bound for samples in the histogram.
Definition at line 169 of file itkHistogramImageToImageMetric.h.
double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UpperBoundIncreaseFactor [protected, inherited] |
The increase in the upper bound.
Definition at line 172 of file itkHistogramImageToImageMetric.h.
bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UpperBoundSetByUser [protected, inherited] |
Boolean flag to indicate whether the user supplied upper bounds or whether they should be computed from the max of image intensities
Definition at line 180 of file itkHistogramImageToImageMetric.h.
1.5.1 written by Dimitri van Heesch,
© 1997-2000