#include <itkShapePriorSegmentationLevelSetFunction.h>
Inheritance diagram for itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >:


This class extends the basic LevelSetFunction with a shape prior term as developed in [1].

where
is the signed distance function from a target shape and
is a scalar constant.
The target shape signed distance function is supplied through a ShapeSignedDistanceFunction object.
SegmentationLevelSetImageFunction
Definition at line 53 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef SmartPointer<const Self> itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ConstPointer |
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 61 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::ContinuousIndexType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ContinuousIndexType |
Continuous index type recognized by the interpolator
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 81 of file itkShapePriorSegmentationLevelSetFunction.h.
typedef ZeroFluxNeumannBoundaryCondition<ImageType> itk::FiniteDifferenceFunction< TImageType >::DefaultBoundaryConditionType [inherited] |
The default boundary condition for finite difference functions that is used unless overridden in the Evaluate() method.
Definition at line 92 of file itkFiniteDifferenceFunction.h.
| typedef TFeatureImageType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::FeatureImageType |
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 62 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::FeatureScalarType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::FeatureScalarType |
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 74 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::FloatOffsetType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::FloatOffsetType |
A floating point offset from an image grid location. Used for interpolation among grid values in a neighborhood.
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 76 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::GlobalDataStruct itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GlobalDataStruct |
A global data type used to store values needed to compute the time step.
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 117 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::ImageType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ImageType |
Extract some parameters from the superclass.
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 68 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::IndexType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::IndexType |
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 80 of file itkShapePriorSegmentationLevelSetFunction.h.
typedef int itk::LightObject::InternalReferenceCountType [protected, inherited] |
Define the type of the reference count according to the target. This allows the use of atomic operations
Definition at line 139 of file itkLightObject.h.
typedef LinearInterpolateImageFunction<ImageType> itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::InterpolatorType [inherited] |
Define a scalar interpolator
Definition at line 79 of file itkSegmentationLevelSetFunction.h.
typedef Superclass::NeighborhoodScalesType itk::LevelSetFunction< TImageType >::NeighborhoodScalesType [inherited] |
The type of data structure that holds the scales with which the neighborhood is weighted to properly account for spacing and neighborhood radius.
Reimplemented from itk::FiniteDifferenceFunction< TImageType >.
Reimplemented in itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >.
Definition at line 91 of file itkLevelSetFunction.h.
| typedef Superclass::NeighborhoodType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::NeighborhoodType |
The type of data structure that is passed to this function object to evaluate at a pixel that does not lie on a data set boundary.
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 72 of file itkShapePriorSegmentationLevelSetFunction.h.
typedef Superclass::PixelRealType itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::PixelRealType [inherited] |
Reimplemented from itk::LevelSetFunction< TImageType >.
Definition at line 61 of file itkSegmentationLevelSetFunction.h.
| typedef Superclass::PixelType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::PixelType |
Reimplemented from itk::LevelSetFunction< TImageType >.
Definition at line 78 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef SmartPointer<Self> itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Pointer |
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 60 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::RadiusType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::RadiusType |
Neighborhood radius type
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 75 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::ScalarValueType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ScalarValueType |
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 73 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef ShapePriorSegmentationLevelSetFunction itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Self |
Standard class typedefs.
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 58 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef ShapeFunctionType::ConstPointer itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ShapeFunctionPointer |
Definition at line 90 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef ShapeSignedDistanceFunction<double, itkGetStaticConstMacro(ImageDimension)> itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ShapeFunctionType |
ShapeFunction typedef support.
Definition at line 89 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef SegmentationLevelSetFunction<TImageType,TFeatureImageType> itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Superclass |
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 59 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::TimeStepType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::TimeStepType |
Convenient typedefs.
Reimplemented from itk::LevelSetFunction< TImageType >.
Definition at line 79 of file itkShapePriorSegmentationLevelSetFunction.h.
| typedef Superclass::VectorImageType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::VectorImageType |
Define an image type for the advection field.
Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 77 of file itkShapePriorSegmentationLevelSetFunction.h.
typedef VectorLinearInterpolateImageFunction<VectorImageType> itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::VectorInterpolatorType [inherited] |
Define a vector interpolator
Definition at line 82 of file itkSegmentationLevelSetFunction.h.
typedef Superclass::VectorType itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::VectorType [inherited] |
The vector type that will be used in the calculations.
Reimplemented from itk::LevelSetFunction< TImageType >.
Definition at line 68 of file itkSegmentationLevelSetFunction.h.
| itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ShapePriorSegmentationLevelSetFunction | ( | ) | [protected] |
| virtual itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::~ShapePriorSegmentationLevelSetFunction | ( | ) | [inline, protected, virtual] |
Definition at line 141 of file itkShapePriorSegmentationLevelSetFunction.h.
| itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ShapePriorSegmentationLevelSetFunction | ( | const Self & | ) | [protected] |
| virtual VectorType itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::AdvectionField | ( | const NeighborhoodType & | , | |
| const FloatOffsetType & | , | |||
| GlobalDataStruct * | gd | |||
| ) | const [protected, virtual, inherited] |
Advection field. Returns a vector from the computed advectionfield.
Reimplemented from itk::LevelSetFunction< TImageType >.
| virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::AllocateAdvectionImage | ( | ) | [virtual, inherited] |
Allocates the image that will be used for the level set function's Advection field term. See LevelSetFunction for more information.
| virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::AllocateSpeedImage | ( | ) | [virtual, inherited] |
Allocates the image that will be used for the level set function's Propagation Speed term. See LevelSetFunction for more information.
| static void itk::LightObject::BreakOnError | ( | ) | [static, inherited] |
This method is called when itkExceptionMacro executes. It allows the debugger to break on error.
| virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::CalculateAdvectionImage | ( | ) | [inline, virtual, inherited] |
This method must be defined in a subclass to implement a working function object. This method is called before the solver begins its work to produce the speed image used as the level set function's Advection field term. See LevelSetFunction for more information.
Reimplemented in itk::CannySegmentationLevelSetFunction< TImageType, TFeatureImageType >, itk::CurvesLevelSetFunction< TImageType, TFeatureImageType >, itk::GeodesicActiveContourLevelSetFunction< TImageType, TFeatureImageType >, and itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 122 of file itkSegmentationLevelSetFunction.h.
| virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::CalculateSpeedImage | ( | ) | [inline, virtual, inherited] |
This method must be defined in a subclass to implement a working function object. This method is called before the solver begins its work to produce the speed image used as the level set function's Propagation speed term. See LevelSetFunction for more information.
Reimplemented in itk::CannySegmentationLevelSetFunction< TImageType, TFeatureImageType >, itk::CurvesLevelSetFunction< TImageType, TFeatureImageType >, itk::GeodesicActiveContourLevelSetFunction< TImageType, TFeatureImageType >, itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >, itk::LaplacianSegmentationLevelSetFunction< TImageType, TFeatureImageType >, itk::ShapeDetectionLevelSetFunction< TImageType, TFeatureImageType >, itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >, and itk::VectorThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >.
Definition at line 116 of file itkSegmentationLevelSetFunction.h.
| virtual ScalarValueType itk::LevelSetFunction< TImageType >::Compute3DMinimalCurvature | ( | const NeighborhoodType & | , | |
| const FloatOffsetType & | , | |||
| GlobalDataStruct * | gd = 0 | |||
| ) | [virtual, inherited] |
| virtual ScalarValueType itk::LevelSetFunction< TImageType >::ComputeCurvatureTerm | ( | const NeighborhoodType & | , | |
| const FloatOffsetType & | , | |||
| GlobalDataStruct * | gd = 0 | |||
| ) | [virtual, inherited] |
| virtual TimeStepType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ComputeGlobalTimeStep | ( | void * | globalData | ) | const [virtual] |
Compute global time step from the global data structure.
Reimplemented from itk::LevelSetFunction< TImageType >.
| virtual ScalarValueType itk::LevelSetFunction< TImageType >::ComputeMeanCurvature | ( | const NeighborhoodType & | , | |
| const FloatOffsetType & | , | |||
| GlobalDataStruct * | gd = 0 | |||
| ) | [virtual, inherited] |
| virtual ScalarValueType itk::LevelSetFunction< TImageType >::ComputeMinimalCurvature | ( | const NeighborhoodType & | , | |
| const FloatOffsetType & | , | |||
| GlobalDataStruct * | gd = 0 | |||
| ) | [virtual, inherited] |
| const NeighborhoodScalesType itk::FiniteDifferenceFunction< TImageType >::ComputeNeighborhoodScales | ( | ) | const [inherited] |
Compute the scales that weight the neighborhood during difference operations to properly account for spacing and neighborhood radius
| virtual PixelType itk::LevelSetFunction< TImageType >::ComputeUpdate | ( | const NeighborhoodType & | neighborhood, | |
| void * | globalData, | |||
| const FloatOffsetType & | = FloatOffsetType(0.0) | |||
| ) | [virtual, inherited] |
Compute the equation value.
Implements itk::FiniteDifferenceFunction< TImageType >.
| virtual PixelType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ComputeUpdate | ( | const NeighborhoodType & | neighborhood, | |
| void * | globalData, | |||
| const FloatOffsetType & | = FloatOffsetType(0.0) | |||
| ) | [virtual] |
Compute the equation value with the additional shape prior term.
| virtual Pointer itk::LightObject::CreateAnother | ( | ) | const [virtual, inherited] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented in itk::Object.
| virtual ScalarValueType itk::LevelSetFunction< TImageType >::CurvatureSpeed | ( | const NeighborhoodType & | , | |
| const FloatOffsetType & | , | |||
| GlobalDataStruct * | = 0 | |||
| ) | const [inline, virtual, inherited] |
Curvature speed. Can be used to spatially modify the effects of curvature . The default implementation returns one.
Definition at line 137 of file itkLevelSetFunction.h.
| virtual void itk::LightObject::Delete | ( | ) | [virtual, inherited] |
Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.
| virtual VectorImageType* itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetAdvectionImage | ( | ) | const [inline, virtual, inherited] |
Get/Set the image used as the advection field in the level set equation
Definition at line 101 of file itkSegmentationLevelSetFunction.h.
| ScalarValueType itk::LevelSetFunction< TImageType >::GetAdvectionWeight | ( | ) | const [inline, inherited] |
Definition at line 152 of file itkLevelSetFunction.h.
| ScalarValueType itk::LevelSetFunction< TImageType >::GetCurvatureWeight | ( | ) | const [inline, inherited] |
Definition at line 166 of file itkLevelSetFunction.h.
| ScalarValueType itk::LevelSetFunction< TImageType >::GetEpsilonMagnitude | ( | ) | const [inline, inherited] |
Definition at line 180 of file itkLevelSetFunction.h.
| virtual const FeatureImageType* itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetFeatureImage | ( | ) | const [inline, virtual, inherited] |
Set/Get the image which will be used to calculate the speed function.
Definition at line 88 of file itkSegmentationLevelSetFunction.h.
| virtual void* itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetGlobalDataPointer | ( | ) | const [inline, virtual] |
Returns a pointer to a global data structure for computing time step.
Reimplemented from itk::LevelSetFunction< TImageType >.
Definition at line 124 of file itkShapePriorSegmentationLevelSetFunction.h.
References itk::LevelSetFunction< TImageType >::GlobalDataStruct::m_MaxAdvectionChange, itk::LevelSetFunction< TImageType >::GlobalDataStruct::m_MaxCurvatureChange, itk::LevelSetFunction< TImageType >::GlobalDataStruct::m_MaxPropagationChange, and itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ShapePriorGlobalDataStruct::m_MaxShapePriorChange.
| ScalarValueType itk::LevelSetFunction< TImageType >::GetLaplacianSmoothingWeight | ( | ) | const [inline, inherited] |
Definition at line 173 of file itkLevelSetFunction.h.