<div dir="ltr">Hi Jim, Won-Ki,<br><br>Sorry I did not notice that InputImageType is GPU image.<br><br>I’ve tried the itkGPUDiscreteGaussianImageFilterTest with floats as input and same settings as in Jose example.<br>It works for my on NVidia, ATI machine on Windows, but as soon as you change it to short images it does not work anymore. I’ve latest beta driver for ATI and latest on NVIDIA driver. I think something wrong, if I try to save CPU image, it looks valid to me.<br>
<br>I general, what I wanted to point is that following call GPUFilter->GetOutput()->UpdateBuffers(); // synchronization point (GPU->CPU memcpy) should not happen and have to be removed from the user code. And that is similar to GPUExplicitSync method that I've to use sometimes. You may have problem for synchronization will explain bellow.<br>
<br>Following code GPUFilter->GetOutput()->UpdateBuffers() is only possible to use if input or output image was explicitly created as itk::GPUImage.
And this is not available once <br>itk::ObjectFactoryBase::RegisterFactory( itk::GPUImageFactory::New() ) is used.<br><br>According to me there are few ways you should be able to enable GPU support in you code:<br>1.    Using Registry Factory<br>

2.    Using explicit definition on the itk::GPUImage and itk::GPU* filters<br>3.    Combination of 1 and 2<br><br>1. Using Registry Factory<br><br>1.1 I like this approach, but you should not change you original code at all, no extra code should be added except RegisterFactory. 
Therefore UpdateBuffers() or similar sync points should be out from the user code. Example where sync UpdateBuffers() goes wrong would be something like implementing filter which use GPU and CPU calculations in GenerateData(). For example itkGPUSmoothingRecursiveGaussianImageFilter.<br>

You could enable GPUImageFactory and GPURecursiveGaussianImageFilterFactory to convert it to GPU, but it also has a caster which may work on CPU by design. At this moment you would not be able to change original itkSmoothingRecursiveGaussianImageFilter, to inject extra sync steps like UpdateBuffers().<br>

I think that all sync steps should be managed by the GPU pipeline, not by the user.<br><br>1.2 RegisterFactory approach have some problems as well. What if you original code was based on doubles, where you would like to enable only float support on GPU. Then RegisterFactory would not be a solution, sometimes you need extra copy steps. The RegisterFactory also increase compilation and linking and you need to know where to place it. <br>
You need to solve other things like: Where factories should be created on the library side or on the application side and how many of them? etc<br>
<br>2. Using explicit definition<br>The current GPU pipeline does not manage correctly CPU->GPU->CPU pipeline connections or similar connections.<br>You need to add extra steps to enable it.<br><br>3.  Combination of 1 and 2<br>

Should be always available, sometimes that is only correct way to make GPU filter.<br><br>I could think about many examples where synchronization in current implementation may not work:<br><br>1.  Most of the problems I’ve experienced is when Grafting() is used for the output.<br>

The GraftOutput() does not trigger any updates on CPU side as far as I’ve tried.<br>Therefore you always have to manage this step yourself.<br>  <br>2.  Classes called itkImageAlgorithm, itkImageAdaptor and other similar classes or any direct access to the raw pointers. <br>
This is much bigger problem. If this classes or direct access to the raw pointers are used, the data are not synchronized anymore.
This is more tricky to find, you may have GPU image perfectly allocated and somewhere in ITK pipeline it was used. Not even you have to synchronize, but you have to do it in the right time.<br><br>3.  Limited GPU memory. It is possible to run GPU pipeline with limited memory if you perform more smart <br>

synchronization for the input and output images. Current ITK pipelines could use Gb’s of data pushed through it. On GPU you don’t have this possibility. You can’t just keep allocating 512x512x256 images for every input and output on GPU.<br>

Therefore you would have to create a special way to execute GPU pipeline.<br><br>4.  Very long GPU pipelines in combination with other ITK filters.<br>There you will have very complex output allocation, in place filtering, release outputs, setting output regions, crafting etc.<br>

In this pipelines you don’t have to always copy data back to CPU if next filter is GPU or even avoid running code on current GPU etc.<br><br>Regards,<br>Denis Shamonin<br><br></div><div class="gmail_extra"><br><br><div class="gmail_quote">
On Wed, Apr 23, 2014 at 8:28 PM, Kristen Zygmunt <span dir="ltr"><<a href="mailto:krismz@sci.utah.edu" target="_blank">krismz@sci.utah.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">I also get an output image filled with 0 when I run the GPUDiscreteGaussianImageFilterTest with the ITK test image (Examples/Data/BrainProtonDensitySlice.png) and pixel types changed to short.  However, I do not see the NaNs that José saw when using float.  José, can you try running your code again with pixel types as float using either the ITK test image or using another image that starts out as float (perhaps there is trouble reading in your vtk ushort image) to see if you get NaNs with these images as well?  I do think there is a bug with the way shorts are handled in this filter, but I'm trying to determine whether your float NaNs are a separate bug or a related issue.<div>
<br></div><div>I used the following command to run the test code with various test images :</div><div>>> /path/to/build/ITK/bin/ITKGPUSmoothingTestDriver itkGPUDiscreteGaussianImageFilterTest /path/to/source/ITK/Examples/Data/BrainProtonDensitySlice.png /path/to/output/gpuGaussianImageFilterTest3DOutput.mha 3</div>
<div><br></div><div>-Kris<div><div class="h5"><br><div><br><blockquote type="cite"><div dir="ltr">I cannot follow this either. ITK v4 GPU framework do not require users to manually synchronize because ITK will handle dirty flags / data synchronization automatically.<div>
<br></div><div>Won-Ki</div></div><div class="gmail_extra">
<br><br><div class="gmail_quote">2014-04-22 19:43 GMT+09:00 Jim Miller <span dir="ltr"><<a href="mailto:millerjv@gmail.com" target="_blank">millerjv@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">

<div dir="auto"><div>Denis,</div><div><br></div><div>I am not following your recommendations for Jose. </div><div><br></div><div>Are you stating that sometimes ITK does not copy the result of the GPU filter back into the CPU memory?</div>

<div><br></div><div>A user should not have to use e methods you are directing Jose towards. <br><br>Jim</div><div><br>On Apr 22, 2014, at 5:28 AM, Denis Shamonin <<a href="mailto:dshamoni@gmail.com" target="_blank">dshamoni@gmail.com</a>> wrote:<br>

<br></div><blockquote type="cite"><div dir="ltr"><p class="MsoNormal">Hi Jose,</p><div> <br></div><p class="MsoNormal">The synchronization from CPU to GPU image and back, may or
may not be triggered by the default in the current ITK implementation.</p><p class="MsoNormal">You have to make an extra effort to control it. Basically,
you have to make sure that GPU input image is allocated and copied from CPU to
GPU,</p><p class="MsoNormal">execute the filter which only use input and output images,
copy GPU output image back to CPU.</p><div> <br></div><p class="MsoNormal">Ideally, you should not control it and that has to be
managed by the ITK GPU pipeline itself (hided from the user), but this is not a
case right now.</p><div> <br></div><p class="MsoNormal">There are few problems. First, what you get after calling
reader->GetOutput() is normal ITK image that you passing to the GPU filter,</p><p class="MsoNormal">while expecting GPU image at this moment. What you want is
that GPU image is ready when you call reader->GetOutput() (created,
allocated and copied to GPU).</p><p class="MsoNormal">The second problem may happen right after calling the GPU
filter, the memory for output are not copied back to CPU output image.</p><div> <br></div><p class="MsoNormal">What you should do is following:</p><p class="MsoNormal">1 Create GPU input image.</p><div> <br></div><p class="MsoNormal">
1.1 Register the GPUImageFactory before calling GPUReader =
ReaderType::New();</p><p class="MsoNormal"><span> 
</span>itk::ObjectFactoryBase::RegisterFactory( itk::GPUImageFactory::New() );</p><div><span>  </span><br></div><p class="MsoNormal"><span>  </span>At this moment ALL
ITK images which are created will be itk::GPUImage's with memory allocated on
GPU.</p><p class="MsoNormal"><span>  </span>Use it with care,
you may end up with not intended copying to GPU when you modify this images.</p><p class="MsoNormal"><span>  </span>The reader once
created will also have GPU image inside and that what you need.</p><p class="MsoNormal"><span>  </span>You may unregister
factory right after you have used it.</p><div> <br></div><p class="MsoNormal">1.2 Alternative way if registering factory is not possible
for you application.</p><p class="MsoNormal"><span>  </span>But you still want
to use GPU filter in the middle of your application you may consider following:</p><p class="MsoNormal"><span>      </span>gpuInputImage =
GPUInputImageType::New();</p><p class="MsoNormal"><span>     
</span>gpuInputImage->GraftITKImage( itkimage );<span>  </span>// normal itk image here</p><p class="MsoNormal"><span>     
</span>gpuInputImage->AllocateGPU(); // allocate only on GPU</p><p class="MsoNormal"><span>     
</span>gpuInputImage->GetGPUDataManager()->SetCPUBufferLock( true ); //
we don't want to change it CPU input</p><p class="MsoNormal"><span>     
</span>gpuInputImage->GetGPUDataManager()->SetGPUDirtyFlag( true );<span>  </span>// set gpu dirty flag</p><p class="MsoNormal"><span>     
</span>gpuInputImage->GetGPUDataManager()->UpdateGPUBuffer(); <span> </span>// copy cpu -> gpu</p><div><span> </span><span>     </span><br></div><p class="MsoNormal">2. Construct you filter, set input from the reader (or
gpuInput image), call your filter.</p><p class="MsoNormal"><span>  </span>At the moment of
construction GPU filter will create GPU output image for you.</p><div> <br></div><p class="MsoNormal">3. Call extra synchronization step after
GPUFilter->Update(); (listed below)</p><p class="MsoNormal">itk::GPUExplicitSync< FilterType, OutputImageType >(
GPUFilter, false );</p><div> <br></div><p class="MsoNormal">4. Write results</p><div> <br></div><p class="MsoNormal">I hope that helps a bit. Making or using GPU filters with
ITK is a bit of the challenge right now. </p><p class="MsoNormal">Specially to get it working across all GPU cards available.</p><div> <br></div><p class="MsoNormal">You could check the correct execution for
itkGPUShrinkImageFilter as example in The Insight Journal paper:</p><p class="MsoNormal"><a href="http://www.insight-journal.org/browse/publication/884" target="_blank">http://www.insight-journal.org/browse/publication/884</a></p>
<div> <br></div><p class="MsoNormal">Regards,</p><p class="MsoNormal">-Denis Shamonin</p><p class="MsoNormal">Division of Image Processing (LKEB)</p><p class="MsoNormal">Department of Radiology</p><p class="MsoNormal">Leiden University Medical Center</p>
<p class="MsoNormal">PO Box 9600, 2300 RC Leiden, The Netherlands</p>

<div class="gmail_extra"><br><br>//------------------------------------------------------------------------------<br>// GPU explicit synchronization helper function<br>template< class ImageToImageFilterType, class OutputImageType ><br>


void<br>GPUExplicitSync( typename ImageToImageFilterType::Pointer & filter,<br>  const bool filterUpdate = true,<br>  const bool releaseGPUMemory = false )<br>{<br>  if( filter.IsNotNull() )<br>  {<br>    if( filterUpdate )<br>


    {<br>      filter->Update();<br>    }<br><br>    typedef typename OutputImageType::PixelType                               OutputImagePixelType;<br>    typedef GPUImage< OutputImagePixelType, OutputImageType::ImageDimension > GPUOutputImageType;<br>


    GPUOutputImageType * GPUOutput = dynamic_cast< GPUOutputImageType * >( filter->GetOutput() );<br>    if( GPUOutput )<br>    {<br>      GPUOutput->UpdateBuffers();<br>    }<br><br>    if( releaseGPUMemory )<br>


    {<br>      GPUOutput->GetGPUDataManager()->Initialize();<br>    }<br>  }<br>  else<br>  {<br>    itkGenericExceptionMacro( << "The filter pointer is null." );<br>  }<br>}<br><br><br><br><div class="gmail_quote">


On Wed, Apr 16, 2014 at 3:24 PM, Jose Ignacio Prieto <span dir="ltr"><<a href="mailto:joseignacio.prieto@gmail.com" target="_blank">joseignacio.prieto@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">


<div dir="ltr">Hi Jim,<div><br><div>It had a different problem when using float. It would show a NAN on the results. That's why I changed to short. <div>The card has 4GB ram. </div></div></div></div><div>
<div class="gmail_extra">
<br><br><div class="gmail_quote">On Tue, Apr 15, 2014 at 7:40 PM, Jim Miller <span dir="ltr"><<a href="mailto:millerjv@gmail.com" target="_blank">millerjv@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">



<div dir="auto"><div>Does the test for GPUDiscreteGaussian run on your platform?</div><div><br></div><div>The test uses a pixel type of float. Your code does not. You might try float. </div><div><br></div><div>The Gaussian filter will require much more GPU memory than the mean filter. How much memory does your GPU have?<br>



<br>Jim</div><div><div><br>On Apr 15, 2014, at 11:18 AM, Jose Ignacio Prieto <<a href="mailto:joseignacio.prieto@gmail.com" target="_blank">joseignacio.prieto@gmail.com</a>> wrote:<br><br></div><blockquote type="cite">



<div><div dir="ltr">Hi all, I am having trouble using GPUdiscretegaussian. It works for me on CPU but GPU version gives output 0. I tried running the test code but no help. I do run GPUMean filter. My card is AMDw7000 and using opencl 1.2, itk 4.6<div>




<br></div><div>Here is the code and the output. The images are vtk files of 320x320x231, ushort.</div><div><br></div><div><pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">/*=========================================================================</span></pre>





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<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">*</span><span style="color:rgb(192,192,192)">         </span><span style="color:rgb(0,128,0)"><a href="http://www.apache.org/licenses/LICENSE-2.0.txt" target="_blank">http://www.apache.org/licenses/LICENSE-2.0.txt</a></span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">*</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">*</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,128,0)">Unless</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">required</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">by</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">applicable</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">law</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">or</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">agreed</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">to</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">in</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">writing,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">software</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">*</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,128,0)">distributed</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">under</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">the</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">License</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">is</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">distributed</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">on</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">an</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"AS</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">IS"</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">BASIS,</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">*</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,128,0)">WITHOUT</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">WARRANTIES</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">OR</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">CONDITIONS</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">OF</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">ANY</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">KIND,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">either</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">express</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">or</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">implied.</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">*</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,128,0)">See</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">the</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">License</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">for</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">the</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">specific</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">language</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">governing</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">permissions</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">and</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">*</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,128,0)">limitations</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">under</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">the</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">License.</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">*</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">*=========================================================================*/</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkImageFileReader.h"</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkImageFileWriter.h"</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkGPUImage.h"</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkGPUKernelManager.h"</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkGPUContextManager.h"</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkGPUImageToImageFilter.h"</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkGPUNeighborhoodOperatorImageFilter.h"</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkTimeProbe.h"</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkGaussianOperator.h"</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkDiscreteGaussianImageFilter.h"</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkGPUDiscreteGaussianImageFilter.h"</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkMeanImageFilter.h"</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">#include</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"itkGPUMeanImageFilter.h"</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">float</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">InputPixelType;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">float</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">OutputPixelType;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(128,128,0)">typedef</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(128,128,0)">short</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">InputPixelType</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(128,128,0)">typedef</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(128,128,0)">short</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">OutputPixelType</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(128,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">GPUImage</span><span><</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">InputPixelType</span><span>,</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,0,128)">3</span><span style="color:rgb(192,192,192)"> </span><span>></span><span style="color:rgb(192,192,192)">   </span><span style="color:rgb(128,0,128)">InputImageType</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(128,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">GPUImage</span><span><</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">OutputPixelType</span><span>,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">3</span><span style="color:rgb(192,192,192)"> </span><span>></span><span style="color:rgb(192,192,192)">   </span><span style="color:rgb(128,0,128)">OutputImageType</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(128,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">ImageFileReader</span><span><</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">InputImageType</span><span style="color:rgb(192,192,192)">  </span><span>></span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(128,0,128)">ReaderType</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(128,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">ImageFileWriter</span><span><</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">OutputImageType</span><span style="color:rgb(192,192,192)"> </span><span>></span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(128,0,128)">WriterType</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(128,128,0)">int</span><span style="color:rgb(192,192,192)"> </span><span>main</span><span>(</span><span style="color:rgb(128,128,0)">int</span><span style="color:rgb(192,192,192)"> </span><span>argc</span><span>,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,128,0)">char</span><span style="color:rgb(192,192,192)"> </span><span>*</span><span>argv</span><span>[])</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span>{</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">if</span><span>(!</span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span>IsGPUAvailable</span><span>())</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>{</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,0,128)">std</span><span>::</span>cerr<span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"OpenCL-enabled</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">GPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">is</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">not</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">present."</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">std</span><span>::</span>endl<span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,128,0)">return</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">EXIT_FAILURE</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>}</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">if</span><span>(</span><span style="color:rgb(192,192,192)"> </span><span>argc</span><span style="color:rgb(192,192,192)"> </span><span><</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,0,128)">3</span><span style="color:rgb(192,192,192)"> </span><span>)</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>{</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,0,128)">std</span><span>::</span>cerr<span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"Error:</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">missing</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">arguments"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">std</span><span>::</span>endl<span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,0,128)">std</span><span>::</span>cerr<span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"inputfile</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">outputfile</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">[num_dimensions]"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">std</span><span>::</span>endl<span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,128,0)">return</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">EXIT_FAILURE</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>}</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">std</span><span>::</span><span style="color:rgb(128,0,128)">string</span><span style="color:rgb(192,192,192)"> </span><span>inFile</span><span>(</span><span style="color:rgb(192,192,192)"> </span><span>argv</span><span>[</span><span style="color:rgb(0,0,128)">1</span><span>]</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">std</span><span>::</span><span style="color:rgb(128,0,128)">string</span><span style="color:rgb(192,192,192)"> </span><span>outFile</span><span>(</span><span style="color:rgb(192,192,192)"> </span><span>argv</span><span>[</span><span style="color:rgb(0,0,128)">2</span><span>]</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">unsigned</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,128,0)">int</span><span style="color:rgb(192,192,192)"> </span><span>dim</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">3</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">ReaderType</span><span>::</span><span style="color:rgb(128,0,128)">Pointer</span><span style="color:rgb(192,192,192)"> </span><span>reader</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">WriterType</span><span>::</span><span style="color:rgb(128,0,128)">Pointer</span><span style="color:rgb(192,192,192)"> </span><span>writer</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>reader</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">ReaderType</span><span>::</span><span>New</span><span>();</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>writer</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">WriterType</span><span>::</span><span>New</span><span>();</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>reader</span><span>-></span><span style="font-style:italic">SetFileName</span><span>(</span><span style="color:rgb(192,192,192)"> </span><span>inFile</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>writer</span><span>-></span><span style="font-style:italic">SetFileName</span><span>(</span><span style="color:rgb(192,192,192)"> </span><span>outFile</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">float</span><span style="color:rgb(192,192,192)"> </span><span>variance</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">4.0</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">test</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">1~8</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">threads</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">for</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">CPU</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">int</span><span style="color:rgb(192,192,192)"> </span><span>nThreads</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">8</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">DiscreteGaussianImageFilter</span><span><</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">InputImageType</span><span>,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">OutputImageType</span><span>></span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">CPUFilterType</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">CPUFilterType</span><span>::</span><span style="color:rgb(128,0,128)">Pointer</span><span style="color:rgb(192,192,192)"> </span><span>CPUFilter</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">CPUFilterType</span><span>::</span><span style="color:rgb(128,0,0)">New</span><span>();</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">TimeProbe</span><span style="color:rgb(192,192,192)"> </span><span>cputimer</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>cputimer</span><span>.</span><span>Start</span><span>();</span></pre>

<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>CPUFilter</span><span>-></span>SetNumberOfThreads<span>(</span><span style="color:rgb(192,192,192)"> </span><span>nThreads</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>CPUFilter</span><span>-></span>SetInput<span>(</span><span style="color:rgb(192,192,192)"> </span><span>reader</span><span>-></span><span>GetOutput</span><span>()</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>CPUFilter</span><span>-></span>SetMaximumKernelWidth<span>(</span><span style="color:rgb(0,0,128)">10</span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>CPUFilter</span><span>-></span>SetUseImageSpacingOff<span>();</span></pre>

<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>CPUFilter</span><span>-></span>SetVariance<span>(</span><span style="color:rgb(192,192,192)"> </span><span>variance</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>CPUFilter</span><span>-></span>Update<span>();</span></pre>

<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>cputimer</span><span>.</span><span>Stop</span><span>();</span></pre>

<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">itk::MeanImageFilter<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">InputImageType,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">OutputImageType></span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">CPUFilterType;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">CPUFilterType::Pointer</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">CPUFilter</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">CPUFilterType::New();</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">itk::TimeProbe</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">cputimer;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">cputimer.Start();</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">CPUFilter->SetNumberOfThreads(</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">nThreads</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">CPUFilter->SetInput(</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">reader->GetOutput()</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">////</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,0,128)">CPUFilter->SetMaximumKernelWidth(10);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">////</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,0,128)">CPUFilter->SetUseImageSpacingOff();</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">CPUFilter->SetRadius(</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">variance</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">CPUFilter->Update();</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">cputimer.Stop();</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">std</span><span>::</span>cout<span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"CPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Gaussian</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Filter</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">took</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span>cputimer</span><span>.</span><span>GetMean</span><span>()</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">seconds</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">with</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">              </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span>CPUFilter</span><span>-></span>GetNumberOfThreads<span>()</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">threads.\n"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">std</span><span>::</span>endl<span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">-------</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">GPUDiscreteGaussianImageFilter</span><span><</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">InputImageType</span><span>,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">OutputImageType</span><span>></span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">GPUFilterType</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">GPUFilterType</span><span>::</span><span style="color:rgb(128,0,128)">Pointer</span><span style="color:rgb(192,192,192)"> </span><span>GPUFilter</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">GPUFilterType</span><span>::</span><span style="color:rgb(128,0,0)">New</span><span>();</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">TimeProbe</span><span style="color:rgb(192,192,192)"> </span><span>gputimer</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>gputimer</span><span>.</span><span>Start</span><span>();</span></pre>

<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>GPUFilter</span><span>-></span>SetInput<span>(</span><span style="color:rgb(192,192,192)"> </span><span>reader</span><span>-></span><span>GetOutput</span><span>()</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>GPUFilter</span><span>-></span>SetVariance<span>(</span><span style="color:rgb(192,192,192)"> </span><span>variance</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>GPUFilter</span><span>-></span>SetMaximumKernelWidth<span>(</span><span style="color:rgb(0,0,128)">10</span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>GPUFilter</span><span>-></span>SetUseImageSpacingOff<span>();</span></pre>

<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">GPUFilter->DebugOn();</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">GPUFilter->GPUEnabledOff();</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>GPUFilter</span><span>-></span>Print<span>(</span><span style="color:rgb(128,0,128)">std</span><span>::</span>cout<span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>GPUFilter</span><span>-></span>Update<span>();</span></pre>

<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>GPUFilter</span><span>-></span>GetOutput<span>()-></span>UpdateBuffers<span>();</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">synchronization</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">point</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">(GPU->CPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">memcpy)</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>gputimer</span><span>.</span><span>Stop</span><span>();</span></pre>

<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">std</span><span>::</span>cout<span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"GPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Gaussian</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Filter</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">took</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span>gputimer</span><span>.</span><span>GetMean</span><span>()</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">seconds.\n"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">std</span><span>::</span>endl<span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">typedef</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">itk::GPUMeanImageFilter<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">InputImageType,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">OutputImageType></span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">GPUFilterType;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">GPUFilterType::Pointer</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">GPUFilter</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">GPUFilterType::New();</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">itk::TimeProbe</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">gputimer;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">gputimer.Start();</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">GPUFilter->SetInput(</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">reader->GetOutput()</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">////</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,0,128)">GPUFilter->SetVariance(</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">variance</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">////</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,0,128)">GPUFilter->SetMaximumKernelWidth(10);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">////</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,0,128)">GPUFilter->SetUseImageSpacingOff();</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">////</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,0,128)">GPUFilter->DebugOn();</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,0,128)">////</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,0,128)">GPUFilter->Print(std::cout);</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">GPUFilter->SetRadius(</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">variance</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">GPUFilter->Update();</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">GPUFilter->GetOutput()->UpdateBuffers();</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">synchronization</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">point</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">(GPU->CPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">memcpy)</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">gputimer.Stop();</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">std::cout</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"GPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Gaussian</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Filter</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">took</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">gputimer.GetMean()</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">seconds.\n"</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">std::endl;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">---------------</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">RMS</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Error</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">check</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">---------------</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">double</span><span style="color:rgb(192,192,192)"> </span><span>diff</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">0</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">unsigned</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,128,0)">int</span><span style="color:rgb(192,192,192)"> </span><span>nPix</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">0</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">ImageRegionIterator</span><span><</span><span style="color:rgb(128,0,128)">OutputImageType</span><span>></span><span style="color:rgb(192,192,192)"> </span><span>cit</span><span>(</span><span>CPUFilter</span><span>-></span>GetOutput<span>(),</span><span style="color:rgb(192,192,192)"> </span><span>CPUFilter</span><span>-></span>GetOutput<span>()-></span>GetLargestPossibleRegion<span>());</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,0,128)">itk</span><span>::</span><span style="color:rgb(128,0,128)">ImageRegionIterator</span><span><</span><span style="color:rgb(128,0,128)">OutputImageType</span><span>></span><span style="color:rgb(192,192,192)"> </span><span>git</span><span>(</span><span>GPUFilter</span><span>-></span>GetOutput<span>(),</span><span style="color:rgb(192,192,192)"> </span><span>GPUFilter</span><span>-></span>GetOutput<span>()-></span>GetLargestPossibleRegion<span>());</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">for</span><span>(</span><span>cit</span><span>.</span><span>GoToBegin</span><span>(),</span><span style="color:rgb(192,192,192)"> </span><span>git</span><span>.</span><span>GoToBegin</span><span>();</span><span style="color:rgb(192,192,192)"> </span><span>!</span><span>cit</span><span>.</span><span>IsAtEnd</span><span>();</span><span style="color:rgb(192,192,192)"> </span><span>++</span><span>cit</span><span>,</span><span style="color:rgb(192,192,192)"> </span><span>++</span><span>git</span><span>)</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>{</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,128,0)">double</span><span style="color:rgb(192,192,192)"> </span><span>err</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span>(</span><span style="color:rgb(128,128,0)">double</span><span>)(</span><span>cit</span><span>.</span><span>Get</span><span>())</span><span style="color:rgb(192,192,192)"> </span><span>-</span><span style="color:rgb(192,192,192)"> </span><span>(</span><span style="color:rgb(128,128,0)">double</span><span>)(</span><span>git</span><span>.</span><span>Get</span><span>());</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">         </span><span style="color:rgb(0,128,0)">if(err</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">></span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">0.1</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">||</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">(double)cit.Get()</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">0.1)</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">std::cout</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"CPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">:</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">(double)(cit.Get())</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">",</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">GPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">:</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">(double)(git.Get())</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)"><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">std::endl;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span>diff</span><span style="color:rgb(192,192,192)"> </span><span>+=</span><span style="color:rgb(192,192,192)"> </span><span>err</span><span>*</span><span>err</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span>nPix</span><span>++;</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>}</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>writer</span><span>-></span><span>SetInput</span><span>(</span><span style="color:rgb(192,192,192)"> </span><span>GPUFilter</span><span>-></span>GetOutput<span>()</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(0,128,0)">writer->SetInput(</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">CPUFilter->GetOutput()</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>writer</span><span>-></span><span style="font-style:italic">Update</span><span>();</span></pre>

<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">if</span><span style="color:rgb(192,192,192)"> </span><span>(</span><span>nPix</span><span style="color:rgb(192,192,192)"> </span><span>></span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">0</span><span>)</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>{</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,128,0)">double</span><span style="color:rgb(192,192,192)"> </span><span>RMSError</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span>sqrt</span><span>(</span><span style="color:rgb(192,192,192)"> </span><span>diff</span><span style="color:rgb(192,192,192)"> </span><span>/</span><span style="color:rgb(192,192,192)"> </span><span>(</span><span style="color:rgb(128,128,0)">double</span><span>)</span><span>nPix</span><span style="color:rgb(192,192,192)"> </span><span>);</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,0,128)">std</span><span>::</span>cout<span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"RMS</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Error</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">:</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span>RMSError</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">std</span><span>::</span>endl<span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">the</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">CPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">filter</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">operator</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">has</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">type</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">double</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">but</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">the</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">double</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">precision</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">is</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">not</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">well-supported</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">on</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">most</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">GPUs</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">and</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">by</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">most</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">drivers</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">at</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">this</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">time.</span><span style="color:rgb(192,192,192)">  </span><span style="color:rgb(0,128,0)">Therefore,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">the</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">GPU</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">filter</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">operator</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">has</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">type</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">float</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">relax</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">the</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">RMS</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">threshold</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">here</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">to</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">allow</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">for</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">errors</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">due</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">to</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">differences</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">in</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">precision</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">NOTE:</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">   </span><span style="color:rgb(0,128,0)">a</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">threshold</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">of</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">1.2e-5</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">worked</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">on</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">linux</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">and</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Mac,</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">but</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">not</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Windows</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(0,128,0)">//</span><span style="color:rgb(192,192,192)">   </span><span style="color:rgb(0,128,0)">why?</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,128,0)">double</span><span style="color:rgb(192,192,192)"> </span><span>RMSThreshold</span><span style="color:rgb(192,192,192)"> </span><span>=</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">1.7e-5</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,128,0)">if</span><span style="color:rgb(192,192,192)"> </span><span>(</span><span>vnl_math_isnan</span><span>(</span><span>RMSError</span><span>))</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span>{</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">            </span><span style="color:rgb(128,0,128)">std</span><span>::</span>cout<span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"RMS</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Error</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">is</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">NaN!</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">nPix:</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span>nPix</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">std</span><span>::</span>endl<span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">            </span><span style="color:rgb(128,128,0)">return</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">EXIT_FAILURE</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span>}</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,128,0)">if</span><span style="color:rgb(192,192,192)"> </span><span>(</span><span>RMSError</span><span style="color:rgb(192,192,192)"> </span><span>></span><span style="color:rgb(192,192,192)"> </span><span>RMSThreshold</span><span>)</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span>{</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">            </span><span style="color:rgb(128,0,128)">std</span><span>::</span>cout<span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"RMS</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">Error</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">exceeds</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">threshold</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">("</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span>RMSThreshold</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">")"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">std</span><span>::</span>endl<span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">            </span><span style="color:rgb(128,128,0)">return</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">EXIT_FAILURE</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span>}</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>}</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span style="color:rgb(128,128,0)">else</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>{</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,0,128)">std</span><span>::</span>cout<span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">"No</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">pixels</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">in</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,128,0)">output!"</span><span style="color:rgb(192,192,192)"> </span><span><<</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(128,0,128)">std</span><span>::</span>endl<span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">        </span><span style="color:rgb(128,128,0)">return</span><span style="color:rgb(192,192,192)"> </span><span style="color:rgb(0,0,128)">EXIT_FAILURE</span><span>;</span></pre>





<pre style="margin-top:0px;margin-bottom:0px"><span style="color:rgb(192,192,192)">    </span><span>}</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre>
<pre style="margin-top:0px;margin-bottom:0px"><span>}</span></pre>
<pre style="margin-top:0px;margin-bottom:0px"><br></pre></div><div><br></div><div>OUTPUT</div><div><br></div><div><div style="margin:0px"><br></div><div style="margin:0px"><span style="font-family:Courier;font-size:10pt;font-weight:600;color:rgb(0,0,170)">Starting C:\DocsMaracuya\Build\Ejemplos\Gpu\GPUTest.exe...</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">Platform  : AMD Accelerated Parallel Processing</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">Platform  : AMD Accelerated Parallel Processing</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">Pitcairn</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">Maximum Work Item Sizes : { 256, 256, 256 }</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">Maximum Work Group Size : 256</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">Alignment in bits of the base address : 2048</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">Smallest alignment in bytes for any data type : 128</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">cl_khr_fp64 cl_amd_fp64 cl_khr_global_int32_base_atomics cl_khr_global_int32_extended_atomics cl_khr_local_int32_base_atomics cl_khr_local_int32_extended_atomics cl_khr_int64_base_atomics cl_khr_int64_extended_atomics cl_khr_3d_image_writes cl_khr_byte_addressable_store cl_khr_gl_sharing cl_ext_atomic_counters_32 cl_amd_device_attribute_query cl_amd_vec3 cl_amd_printf cl_amd_media_ops cl_amd_media_ops2 cl_amd_popcnt cl_khr_d3d10_sharing cl_amd_bus_addressable_memory cl_amd_c1x_atomics </span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">CPU Gaussian Filter took 1.70355 seconds with 8 threads.</span></div><div style="font-size:10pt;font-family:Courier;margin:0px"><br></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">Defines: #define DIM_3</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">#define INTYPE short</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">#define OUTTYPE short</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">#define OPTYPE short</span></div><div style="font-size:10pt;font-family:Courier;margin:0px"><br></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">Defines: #define DIM_3</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">#define INTYPE short</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">#define OUTTYPE short</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">#define OPTYPE short</span></div><div style="font-size:10pt;font-family:Courier;margin:0px"><br></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">Defines: #define DIM_3</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">#define INTYPE short</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">#define OUTTYPE short</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">#define OPTYPE short</span></div><div style="font-size:10pt;font-family:Courier;margin:0px"><br></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">GPUDiscreteGaussianImageFilter (0000000002205DF0)</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  RTTI typeinfo:   class itk::GPUDiscreteGaussianImageFilter<class itk::GPUImage<short,3>,class itk::GPUImage<short,3> ></span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Reference Count: 1</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Modified Time: 560</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">  Debug: Off</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Object Name: </span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Observers: </span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    none</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Inputs: </span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    Primary: (000000000216E560) *</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Indexed Inputs: </span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    0: Primary (000000000216E560)</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Required Input Names: Primary</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  NumberOfRequiredInputs: 1</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Outputs: </span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    Primary: (000000000218A070)</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">  Indexed Outputs: </span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    0: Primary (000000000218A070)</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">  NumberOfRequiredOutputs: 1</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Number Of Threads: 8</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">  ReleaseDataFlag: Off</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  ReleaseDataBeforeUpdateFlag: Off</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">  AbortGenerateData: Off</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Progress: 0</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Multithreader: </span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    RTTI typeinfo:   class itk::MultiThreader</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    Reference Count: 1</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    Modified Time: 499</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    Debug: Off</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">    Object Name: </span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    Observers: </span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">      none</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    Thread Count: 8</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    Global Maximum Number Of Threads: 128</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">    Global Default Number Of Threads: 8</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  CoordinateTolerance: 1e-006</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  DirectionTolerance: 1e-006</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  Variance: [4, 4, 4]</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  MaximumError: [0.01, 0.01, 0.01]</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  MaximumKernelWidth: 10</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  FilterDimensionality: 3</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  UseImageSpacing: 0</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">  InternalNumberOfStreamDivisions: 9</span></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">  GPU: Enabled</span></div><div style="margin:0px">
<span style="font-size:10pt;font-family:Courier">GPU Gaussian Filter took 0.111351 seconds.</span></div><div style="font-size:10pt;font-family:Courier;margin:0px"><br></div><div style="margin:0px"><span style="font-size:10pt;font-family:Courier">RMS Error : 26.4279</span></div>
<div style="margin:0px"><span style="font-size:10pt;font-family:Courier">RMS Error exceeds threshold (1.7e-005)</span></div><div style="margin:0px"><span style="font-family:Courier;font-size:10pt;font-weight:600;color:rgb(0,0,170)">C:\DocsMaracuya\Build\Ejemplos\Gpu\GPUTest.exe exited with code 1</span></div>
</div><div><br></div><div><br>-- <br>José Ignacio Prieto<br>



celular(nuevo): 94348182
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-- <br>José Ignacio Prieto<br>celular(nuevo): 94348182
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Visit other Kitware open-source projects at<br>
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</blockquote></div></blockquote></div><br><br clear="all"><div><br></div>-- <br><div dir="ltr"><div>Won-Ki Jeong, PhD</div><div>Assistant Professor</div><div>Electrical and Computer Engineering</div>
<div>Ulsan National Institute of Science and Technology (UNIST)</div>
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