<div dir="ltr"><div>The ITK 4.5.0 Release Candidate 1 has been tagged, and is available for</div><div>testing! Â To obtain the source code,</div><div><br></div><div>Â git clone <a href="http://itk.org/ITK.git">http://itk.org/ITK.git</a></div>
<div>Â cd ITK</div><div>Â git checkout -q --detach v4.5rc01</div><div><br></div><div>For more details, please see</div><div><br></div><div>Â <a href="http://www.itk.org/Wiki/ITK/Git">http://www.itk.org/Wiki/ITK/Git</a></div>
<div><br></div><div>Please test the release candidate and share your experiences on the mailing</div><div>list, issues tracker, and Gerrit Code Review. Â Please include the tag name when</div><div>providing feedback.</div>
<div><br></div><div>Please help identify issues submitting an Experimental build to the dashboard</div><div>with:</div><div><br></div><div> ctest -M Experimental  -T Configure -T Build -T Test -T Submit</div><div><br></div>
<div>and notifying the mailing list. Â Testing your own applications against the RC is</div><div>also appreciated.</div><div><br></div><div><br></div><div><br></div><div>Release candidates will be tagged every week. Â The final release is scheduled</div>
<div>for December 16th.</div><div><br></div><div><br></div><div><br></div><div><br></div><div>New Features</div><div>------------------</div><div><br></div><div><br></div><div>- ITKv4 Registrations can now be run in either 64-bit double or 32-bit float modes. Â Both double and float transform types are also now supported by metrics, optimizers, and IO readers/writers.</div>
<div><br></div><div>- SpacingValueType -- Previously ITK only supported representing physical space as type double. Â This patch introduces a typedef to encapsulate the concept of space precision to more clearly document the intended characteristics of the types. Â This is the first step toward allowing compile time selection of using single precision types for characterizing physical space (origin, spacing, direction cosines). Â There is an CMake configuration option, ITK_USE_FLOAT_SPACE_PRECISION, to allow building the entire toolbox in single precision mode, and currently is intended to facilitate future performance testing. NOTE: Â Use of ITK_USE_FLOAT_SPACE_PRECISION causes many regression test failures, and is not intended for production use at this time.</div>
<div>- Support for “float†type as physical units type in the Registration framework, which makes possible float type displacement fields and faster, less memory intensive registrations</div><div>- Many performance improvements in Registration -- -- Significant performance improvements made for ImageRegistration. See patch sets prefixed by PERF.  False sharing across threads as identified and removed.  Unnecessary mutex lock identified and removed.  For one common case on real sized data, this resulted in a 70X speed increase.</div>
<div>- Two new Remote modules:</div><div>- MGHIO ↠Partial support for reading/writing image files from FreeSurfer (Not a complete implementation, but simple label maps and intensity images can be read/written).</div><div>
- SmoothingRecursiveYvvGaussianFilter</div><div>- The SCIFIO remote modules has also seen nice updates.</div><div>- IO module libraries will now be built as shared libraries with BUILD_SHARED_LIBS ON</div><div>- MRCImageIO moved out of the Review Module</div>
<div>- BinShrinkImageFilter added -- From Insight Journal submission:<a href="http://hdl.handle.net/10380/3450">http://hdl.handle.net/10380/3450</a></div><div>- WrapITK Python wrapping now supporting GCC 4.8</div><div>- JPEG format now writes out spacing in physical units</div>
<div>- MINC ImageIO improvements:</div><div><span class="" style="white-space:pre"> </span>- Correct handling of missing or damaged minc file</div><div><span class="" style="white-space:pre"> </span>- MINCTransformAdapter class to use MINC style transformations stored in .xfm files, using native minc general_transform functions, which means that thin-plate spline non-linear transformations are accessible and calculation of inverse transformation can be done in a way consistent with minc tools. </div>
<div><span class="" style="white-space:pre"> </span>- Ability to store any linear transformation based on MatrixOffsetTransformBase<double,3,3> in minc style .xfm file (using TransformFileWriter). </div><div>- OtsuThresholding classes made more consistent with other libraries</div>
<div><span class="" style="white-space:pre"> </span>- Now the output of the threshold value may be different from previous releases (bug fix)</div><div>- Synchronized with “teem†library 1.11.1, providing NRRD functionalities.</div>
<div>- FlatStructuringElement new option to use a parametric radius in Ball() method</div><div>- LevelSetsv4 now has a penalty term for overlap between level sets.</div><div>- Can now read Philips 4D multi-frame DICOM files</div>
<div>- CMake variable ITK_BUILD_ALL_MODULES was replaced with  ITK_BUILD_DEFAULT_MODULES (same behavior, more appropriate name).</div><div>- Remote Modules were simplified by removing the CMake configuration variable Fetch_{RemoteModuleName} and only requiring Module_{RemoteModuleName}</div>
<div>- New CTest label “RUNS_LONG†to makes it possible to exclude long running tests with “ctest -LE RUNS_LONGâ€</div><div>- Deprecate ITK_USE_REVIEW CMake variable in favor of Module_ITKReview</div><div>- Better support for system installed GDCM</div>
<div>- Preliminary support for Visual Studio 12 (2013)</div><div>- Preliminary support for OSX 10.9 - Maverick   </div><div>- Support for building ITK against a DCMTK 3.6.0 installed on Ubuntu using apt-get</div><div>- Improved support for C++11</div>
<div>- More consistent coding style across the toolkit</div><div>- *Lots* of important bug fixes, including 73 issues reported by Coverity static analysis</div><div>- And more! See the details in the log below.</div><div>
<br></div><div><br></div><div>Known Issues as of Nov 25th</div><div>--------------------------------------</div><div><br></div><div>There are some known issues with RC 1:</div><div><br></div><div>- When building some application against ITK, issues were discovered regarding SpacingValueType; in a few places the precision of points or continuous index were allowed to be non-double. In those cases it is critical that the previous typedef's be maintained.</div>
<div><br></div><div>- Build errors related to a very recent Mac Clang version of LLVM with VXL, compiler: clang version 3.5 (195367), “'memory_tr1' file not found†:</div><div><a href="http://open.cdash.org/viewBuildError.php?buildid=3109102">http://open.cdash.org/viewBuildError.php?buildid=3109102</a></div>
<div><br></div><div>- BinShrinkImageFilter - build error issue on Visual Studio 9 with WrapITK: Â <a href="http://open.cdash.org/viewBuildError.php?buildid=3114116">http://open.cdash.org/viewBuildError.php?buildid=3114116</a>Â </div>
<div><br></div><div><br></div><div>List of changes since v4.4.0</div><div>--------------------------------------</div><div><br></div><div>Ali Ghayoor (5):</div><div>Â Â Â ENH: transform reader/writer filters are templated on output precision type</div>
<div>Â Â Â BUG: Fix memory leak error in itkHDF5TransformIO</div><div>Â Â Â DOC: Migration guide is updated for multi precision of ITK</div><div>Â Â Â BUG: TvirtualImage mismatch in registrationV4 and metric object</div><div>
   STYLE: check dynamic cast validation in ITKv4 Registration</div><div><br></div><div>Andinet Enquobahrie (1):</div><div>   BUG: UseSeriesDetails variable not correctly set</div><div><br></div><div>Arnaud Gelas (24):</div>
<div>Â Â Â ENH: Converting itk::Point, Size, Index, Vector, Matrix to corresponding OpenCV data structure</div><div>Â Â Â BUG: Check that region for thread is not empty</div><div>Â Â Â COMP: use concept checking instead of runtime checking</div>
<div>Â Â Â BUG: Fix failure in InteractivePause test</div><div>Â Â Â ENH: updating level sets sparse layer visualization</div><div>Â Â Â ENH: Upgrade doxygen config file</div><div>Â Â Â BUG: fix KWStyle errors in itkVTKVisualize* files</div>
<div>Â Â Â BUG: Fix visualization of 3D level-sets</div><div>Â Â Â ENH: Add Concept checking for 2D Visualization</div><div>Â Â Â ENH: Use partial template specialization for iso value vis</div><div>Â Â Â BUG: Check that region for thread is not empty</div>
<div>Â Â Â BUG: Fix failure in InteractivePause test</div><div>Â Â Â BUG: fix include to the corresponding hxx</div><div>Â Â Â COMP: fix compilation error with Set/Get LevelSetDataPointerVector</div><div>Â Â Â ENH: Rename LevelSetDataPointerVector -> LevelSetDomainRegionVector</div>
<div>Â Â Â PERF: fix cppcheck issues in itk::ImageRegion</div><div>Â Â Â STYLE: fix cppcheck style warning</div><div>Â Â Â STYLE: fix cppcheck errors</div><div>Â Â Â PERF: fix cppcheck perf warning</div><div>Â Â Â PERF: cppcheck copy constructor</div>
<div>Â Â Â PERF: fix cppcheck issues in itk::ImageRegion</div><div>Â Â Â PERF: cppcheck performance issue</div><div>Â Â Â COMP: fix cppcheck errors member not initialized in constructor</div><div>Â Â Â STYLE: fix cppcheck style warning</div>
<div><br></div><div>Bill Lorensen (27):</div><div>Â Â Â ENH: Reduce test times for Debug builds</div><div>Â Â Â COMP: Bad CMake warning</div><div>Â Â Â COMP: Resource leaks</div><div>Â Â Â COMP: Resource leaks</div><div>Â Â Â COMP: Uninitialized scalar variable</div>
<div>Â Â Â COMP: Unbounded source buffer</div><div>Â Â Â COMP: Destination buffer too small</div><div>Â Â Â COMP: Destination buffer too small</div><div>Â Â Â COMP: Resource leak</div><div>Â Â Â COMP: Resource leak</div><div>
   COMP: Big parameter passed by value</div><div>   COMP: Big parameter passed by value</div><div>   COMP: Copy-paste error</div><div>   COMP: Copy-paste error</div><div>   COMP: Copy-paste error</div><div>
   COMP: Copy-paste error</div><div>   COMP: Copy-paste error</div><div>   COMP: Structurally dead code and resource leaks</div><div>   COMP: Big parameter passed by value</div><div>   COMP: Explicit null dereferenced</div>
<div>Â Â Â COMP: Logically dead code</div><div>Â Â Â COMP: Logically dead code</div><div>Â Â Â COMP: Logically dead code</div><div>Â Â Â COMP: Logically dead code</div><div>Â Â Â COMP: Format string vulnerability</div><div>
   COMP: Copy-paste error</div><div>   COMP: Dead code</div><div><br></div><div>Brad King (5):</div><div>   ENH: ExternalData: Do not re-stage staged object files</div><div>   MetaIO: Removed the deprecated _CM24 CMake variables</div>
<div>Â Â Â COMP: Cleanup CMP0022 warnings in GDCM module</div><div>Â Â Â COMP: Cleanup CMP0022 warnings in GDCM module static build</div><div>Â Â Â BUG: Do not convert to make-escaped path for internal APIs</div><div><br>
</div><div>Bradley Lowekamp (55):</div><div>Â Â Â COMP: Fix ambiguous specialization of GDCM Element</div><div>Â Â Â ENH: Use Tiff version dependent field type enable LSM</div><div>Â Â Â BUG: disable aligned attribute for GCC 4.1</div>
<div>Â Â Â BUG: Prevent signed integer overflow in vnl urand_</div><div>Â Â Â BUG: enable return value optimzation for VS debug mode</div><div>Â Â Â BUG: increase the image tolerance for deformable test 5</div><div>Â Â Â BUG: fix gradient recusive gaussian in VS debug</div>
<div>Â Â Â BUG: in NthElementAdaptor pass by reference to modify argument</div><div>Â Â Â BUG: disable aligned attribute for GCC 4.1</div><div>Â Â Â BUG: Prevent signed integer overflow in vnl urand_</div><div>Â Â Â BUG: enable return value optimzation for VS debug mode</div>
<div>Â Â Â BUG: fix gradient recusive gaussian in VS debug</div><div>Â Â Â BUG: in NthElementAdaptor pass by reference to modify argument</div><div>Â Â Â ENH: Add option ENABLED_SHARED to itk_module for shared libraries</div>
<div>Â Â Â ENH: Enabling shared IO modules on windows</div><div>Â Â Â DOC: adding Examples directory to ITK Doxygen</div><div>Â Â Â DOC: remove explicit doxygen example commands now automatically added</div><div>Â Â Â BUG: add installation of Export headers</div>
<div>Â Â Â BUG: Remove ENABLED_SHARED option for IOSpatialObjects module</div><div>Â Â Â BUG: Fix linking of factory register method on static windows</div><div>Â Â Â STYLE: Fix some style errors reported in continuous test</div>
<div>Â Â Â BUG: Remove Spurious testing file</div><div>Â Â Â COMP: Use relative path for generate output header parameter</div><div>Â Â Â BUG: Enable slice-by-slice streaming for ShrinkImageFilter</div><div>Â Â Â STYLE: Fix ShrinkImageStreamingTest style</div>
<div>Â Â Â PERF: Flip filter use increment in scanline direction</div><div>Â Â Â PERF: Additional FlipImageFilter performance by using input iterator</div><div>Â Â Â PERF: Move test to IntegratedTest directory</div><div>Â Â Â STYLE: fix typedef alignment</div>
<div>Â Â Â ENH: Move validation to VerifyInputInformation</div><div>Â Â Â ENH: Improve internal streaming for SliceBySliceImageFilter</div><div>Â Â Â ENH: Enable a VectorImage to be used as displacement field</div><div>Â Â Â BUG: Don't print null bias field</div>
<div>Â Â Â ENH: Define print of null smart pointers</div><div>Â Â Â BUG: Fix uninitialized m_Spacing in SignedMaurerDistance</div><div>Â Â Â BUG: Fix uninitialized m_Spacing in SignedMaurerDistance</div><div>Â Â Â BUG: Don't print null bias field</div>
<div>Â Â Â BUG: Verify ConfidenceConnected Seeds</div><div>Â Â Â BUG: Verify seeds in VectorConfidenceConnected</div><div>Â Â Â ENH: Check and use C++11 typetraits first</div><div>Â Â Â COMP: Use memcpy for raw memory copy</div>
<div>Â Â Â BUG: Use string constructor which calculates str length</div><div>Â Â Â BUG: fix out of bounds access of array</div><div>Â Â Â ENH: Move private constant and method to private header</div><div>Â Â Â ENH: Adding BinShrinkImageFilter.</div>
<div>Â Â Â COMP: Fix warnings and missing include</div><div>Â Â Â BUG: Fix Valrgrind detected delete mismatch</div><div>Â Â Â ENH: improve coverage for SetShrinkFactor methods</div><div>Â Â Â STYLE: running uncrustify and manual fixups</div>
<div>Â Â Â ENH: Moving MRCImageIO out of review</div><div>Â Â Â COMP: Fix gcc_xml segfault due to structure alignment</div><div>Â Â Â ENH: adding wrapping support for BinShrink</div><div>Â Â Â BUG: Add missing export specifiers for MRC module</div>
<div>Â Â Â ENH: Move MRC wrapping out of review</div><div>Â Â Â COMP: VS12 missing header in review</div><div><br></div><div>Brian Helba (45):</div><div>Â Â Â DOC: Fix instances of class documentation outside itk namespace</div>
<div>Â Â Â PERF: Discourage DomainThreader from spawning superfluous threads</div><div>Â Â Â DOC: Cleanup docs for ThreadedDomainPartitioner and subclasses</div><div>Â Â Â ENH: Implement ThreadedImageRegionPartitioner using ImageRegionSplitter</div>
<div>Â Â Â STYLE: Unify style of "operator delete[]"</div><div>Â Â Â STYLE: Remove superfluous return statements at the end of void functions</div><div>Â Â Â STYLE: Fix miscellaneous KWStyle errors</div><div>Â Â Â ENH: Remove superfluous IMMEDIATE option from CMake CONFIGURE_FILE</div>
<div>Â Â Â STYLE: Replace Unicode in ITK source with ASCII homoglyphs</div><div>Â Â Â ENH: Use MINC API to free memory allocated by MINC</div><div>Â Â Â PERF: Allow delete of NULL pointers</div><div>Â Â Â PERF: Refactor some deletion code</div>
<div>Â Â Â ENH: Refactor KWStyle testing</div><div>Â Â Â COMP: Make find_package usage compatible with < CMake-2.8.8</div><div>Â Â Â BUG: Prevent CMake cache variable from endlessly accumulating values</div><div>Â Â Â ENH: Rename Utilities/KWStyle/<a href="http://ITK.kws.xml.in">ITK.kws.xml.in</a> to ITK.kws.xml</div>
<div>Â Â Â DOC: Update Migration guide schema URL</div><div>Â Â Â ENH: Rename ALL_MODULES to DEFAULT_MODULES</div><div>Â Â Â STYLE: Fix class indentation</div><div>Â Â Â BUG: Make KWStyleTest output in a uniform and concise format</div>
<div>Â Â Â BUG: Update SmoothingRecursiveYvvGaussianFilter to fix CMake warning</div><div>Â Â Â STYLE: Fix some indents in FixedArray::ReverseIterator declaration</div><div>Â Â Â DOC: Fix issues in Transform and TransformBaseTemplate</div>
<div>Â Â Â BUG: Make ImageIOBase::SetDirection accept const reference parameter</div><div>Â Â Â BUG: Fix uninitialized variables in itkOpenCVBasicTypeBridgeTest</div><div>Â Â Â DOC: Prevent concept checking comments from being parsed by Doxygen</div>
<div>Â Â Â BUG: Prevent DCMTK from trying to build unnecessary components</div><div>Â Â Â DOC: Update documentation graph font to avoid warnings</div><div>Â Â Â DOC: Move an included STL file out of the itk namespace</div>
<div>Â Â Â COMP: Fix warning C4789 from VisualStudio 11</div><div>Â Â Â ENH: Add explicit KWStyle testing for Examples directory</div><div>Â Â Â STYLE: Replace indentation tabs with spaces</div><div>Â Â Â STYLE: Fix KWStyle issues in Examples: whitespace</div>
<div>Â Â Â STYLE: Fix KWStyle issues in Examples: typedef alignment</div><div>Â Â Â STYLE: Fix KWStyle issues in Examples: manual fixes</div><div>Â Â Â BUG: Use KWStyle's GCC-style output for pre-commit style check</div>
<div>Â Â Â STYLE: Remove trailing whitespace</div><div>Â Â Â BUG: Make SCIFIO module non-default</div><div>Â Â Â BUG: Fix memory leaks in MINCImageIO</div><div>Â Â Â BUG: Fix ostream format modification warnings</div><div>
   BUG: Fix uninitialized members of MINCImageIO</div><div>   DOC: Move Vector documentation from definition to declaration</div><div>   BUG: Resource leak</div><div>   ENH: Update CMake deprecated commands with new equivalents</div>
<div>Â Â Â STYLE: Fix initialization list in BSplineBaseTransform constructor</div><div><br></div><div>C Cagatay Bilgin (1):</div><div>Â Â Â DOC: Modify ShapeLabelObject comments.</div><div><br></div><div>Christina Rossmanith (1):</div>
<div>Â Â Â BUG: enable itkLabelGeometryImageFilter to be used in loops</div><div><br></div><div>Constantine Zakkaroff (1):</div><div>Â Â Â DOC: Correct DICOM Tag List Formatting</div><div><br></div><div>Cory Quammen (2):</div>
<div>Â Â Â BUG: Enabled negative background values</div><div>Â Â Â BUG: Fixed memory overusage in LandweberDeconvolutionImageFilter</div><div><br></div><div>Csaba Pinter (1):</div><div>Â Â Â BUG: GDCM pixel spacing of ultrasound images.</div>
<div><br></div><div>Cyrille Faucheux (1):</div><div>Â Â Â BUG: Fix support for RLE-compressed & upper-left BMP.</div><div><br></div><div>Daniel Maleike (3):</div><div>Â Â Â BUG: Assert unchanged pixels only for non-PALETTE_COLOR images</div>
<div>Â Â Â BUG: Add test case for GDCMImageIO</div><div>Â Â Â BUG: Assert unchanged pixels only for non-PALETTE_COLOR images</div><div><br></div><div>Dirk Padfield (17):</div><div>Â Â Â BUG: LabelGeometry cropped images with non-unit spacing incorrectly</div>
<div>Â Â Â BUG: ProgressAccumulator reports incorrectly for streamed filters</div><div>Â Â Â BUG: LabelGeometry matrix difference tolerance</div><div>Â Â Â ENH: Added progress reporting to Masked FFT NCC</div><div>Â Â Â BUG: LabelGeometry improvements</div>
<div>Â Â Â BUG: Corrected the MaskedFFTNCC origin</div><div>Â Â Â BUG: Resolved Otsu/OtsuMultiple Discrepancy</div><div>Â Â Â ENH: Deprecated SetProgress and removed Modified call</div><div>Â Â Â ENH: Deprecated SetProgress and removed Modified call</div>
<div>Â Â Â BUG: ConstPointer assigned to non-const raw pointer</div><div>Â Â Â ENH: Otsu code replaced with OtsuMultiple call</div><div>Â Â Â BUG: ConstPointer assigned to non-const raw pointer</div><div>Â Â Â ENH: Added valley emphasis algorithm to OtsuMultipleThresholds</div>
<div>   BUG: ReachedTargetPoints not set for OneTarget</div><div>   ENH: Remove duplicate code in BinaryBall and BinaryCross</div><div>   ENH: Added radiusIsParametric  mode to FlatStructuringElement</div><div>   ENH: Improved writing speed for TIFF images</div>
<div><br></div><div>Ethan Brodsky (1):</div><div>Â Â Â BUG: fixedOrigin corrected in DeformableRegistration examples (ITK-3218)</div><div><br></div><div>Gordon Kindlmann (1):</div><div>Â Â Â BUG: airOneLinify() infinite loop, synch w/ Teem for its 1.11.1 release</div>
<div><br></div><div>Hans Johnson (36):</div><div>Â Â Â ENH: Add Remote Module for r/w of MGH files</div><div>Â Â Â ENH: Provide instructions for linking to issues</div><div>Â Â Â ENH: Feature to allow human readable object names</div>
<div>Â Â Â BUG: Preserve backwards compatibility with types</div><div>Â Â Â PERF: Optimizer scale caching and avoid copy</div><div>Â Â Â ENH: Support single precision registration</div><div>Â Â Â STYLE: Avoid polluting the ITK namespace</div>
<div>Â Â Â STYLE: Simplify H5::Exception handeling</div><div>Â Â Â STYLE: Replace expected exceptions with macro</div><div>Â Â Â BUG: ImageSeriesWriter + GDCMImageIO loses info</div><div>Â Â Â BUG: ImageSeriesWriter + GDCMImageIO loses info</div>
<div>Â Â Â STYLE: ITK_EXPORT had no use</div><div>Â Â Â BUG: Missing ',' in array of strings</div><div>Â Â Â BUG: 'temp' used in exception message after delete</div><div>Â Â Â BUG: Code after exceptions is unreachable</div>
<div>Â Â Â BUG: Printing size of deleted variable</div><div>Â Â Â BUG: Function should have const signature</div><div>Â Â Â COMP: Remove unused variable</div><div>Â Â Â COMP: Simplify code, and remove compiler warning</div>
<div>Â Â Â STYLE: Use "typename" for template parameters</div><div>Â Â Â COMP: Unused Clone and CreateAnother warnings</div><div>Â Â Â STYLE: Prefer initialization to assignement.</div><div>Â Â Â COMP: Const char * ternary operators</div>
<div>Â Â Â BUG: Derived test class missing required logic</div><div>Â Â Â PERF: Remove false sharing across threads</div><div>Â Â Â PERF: Avoid smart pointer registration penalty</div><div>Â Â Â PERF: Avoid vector copy, and prefer multiplication</div>
<div>Â Â Â PERF: Reviewing code for facilitating compiler optimizations</div><div>Â Â Â PERF: Avoid upcasting from float to double</div><div>Â Â Â BUG: Match Convergence Window Precision</div><div>Â Â Â COMP: Remove undefined complex types</div>
<div>Â Â Â COMP: Remove undefined complex types</div><div>Â Â Â COMP: Invalid conversion detected by clang c++11</div><div>Â Â Â COMP: Non standard conversion for -std=c++11</div><div>Â Â Â COMP: Allow single precision space definition</div>
<div>Â Â Â COMP: Namespace change for SpacePrecisionType</div><div><br></div><div>Ho Cheung (6):</div><div>Â Â Â BUG: VS11 Debug mode assertions fixes</div><div>Â Â Â BUG: VS10/11 debug assertions for null pointer for std::copy</div>
<div>Â Â Â BUG: VS11 Debug mode assertions fixes</div><div>Â Â Â BUG: VS10/11 debug assertions for null pointer for std::copy</div><div>Â Â Â ENH: Improve mangling of itktiff library.</div><div>Â Â Â ENH: Improve mangling of itktiff library.</div>
<div><br></div><div>Irina Vidal-Migallon (3):</div><div>Â Â Â ENH: Remote module: GPU and CPU Smoothing recursive YVV Gaussian Filter</div><div>Â Â Â ENH: Remote module: GPU and CPU Smoothing recursive YVV Gaussian Filter</div>
<div>Â Â Â ENH: YVV remote module - Add EXCLUDE_FROM_ALL option to itk_module.</div><div><br></div><div>Jean-Christophe Fillion-Robin (10):</div><div>Â Â Â BUG: Disable aligned attribute to fix Apple GCC 4.2.1 seg fault</div>
<div>Â Â Â COMP: Ensure FindDCMTK module works with and without DCMTKConfig.cmake file</div><div>Â Â Â COMP: Make FindDCMTK more verbose</div><div>Â Â Â DOC: Improve FindDCMTK.cmake documentation</div><div>Â Â Â COMP: Ensure DCMTK libraries can be found on system without setting DCMTK_DIR</div>
<div>Â Â Â COMP: FindDCMTK - Workaround bug in packaging of DCMTK 3.6.0 on Debian.</div><div>Â Â Â COMP: Update ITKDCMTK_EXPORT_CODE_(BUILD|INSTALL) to support system DCMTK</div><div>Â Â Â COMP: FindDCMTK - Exclude -D from DCMTK_DEFINITIONS for easier re-use</div>
<div>Â Â Â COMP: FindDCMTK - Do not explicitly set DCMTK_DEFINITIONS</div><div>Â Â Â COMP: Associate ITKIODCMTK with DCMTK_DEFINITIONS</div><div><br></div><div>Jim Miller (5):</div><div>Â Â Â BUG: GDCMImageIO ignore image orienations from MetaDataDictionary</div>
<div>Â Â Â BUG: Two tests were writing to same filename.</div><div>Â Â Â BUG: GDCMImageIO ignore image orienations from MetaDataDictionary</div><div>Â Â Â BUG: Two tests were writing to same filename.</div><div>Â Â Â ENH: ResampleImageFilter ReferenceImage only needs to match dimension</div>
<div><br></div><div>Jonathan Guinet (2):</div><div>Â Â Â BUG: {Opening,Closing}ByReconstructionImageFilter information propagation</div><div>Â Â Â BUG: {Opening,Closing}ByReconstructionImageFilter information propagation</div>
<div><br></div><div>Julien Michel (1):</div><div>Â Â Â ENH: Adding a separate template parameter to handle transform precision</div><div><br></div><div>KWSys Robot (1):</div><div>Â Â Â KWSys 2013-07-10 (beef6819)</div><div>
<br></div><div>Kent Williams (22):</div><div>Â Â Â ENH: fix std::string usage</div><div>Â Â Â DOC: Rename DCMTKException DCMTKExceptionOrErrorReturn</div><div>Â Â Â ENH: fix std::string usage</div><div>Â Â Â BUG: Need to set 3rd dir cosine for DICOM images</div>
<div>Â Â Â ENH: Accomodate Philips 4D Multiframe DICOM files</div><div>Â Â Â BUG: Guard against Divide by Zero</div><div>Â Â Â BUG: Row/Column assignment into ImageDimensions was wrong</div><div>Â Â Â BUG: Guard against Divide by Zero</div>
<div>Â Â Â BUG: Row/Column assignment into ImageDimensions was wrong</div><div>Â Â Â ENH: Accomodate Philips 4D Multiframe DICOM files</div><div>Â Â Â DOC: Rename DCMTKException DCMTKExceptionOrErrorReturn</div><div>Â Â Â BUG: Need to set 3rd dir cosine for DICOM images</div>
<div>Â Â Â COMP: Update git tag to incorporate MGHIO origin fix</div><div>Â Â Â COMP: Move TransformFileWriter Specializations to CXX file.</div><div>Â Â Â BUG: Bug fixed in remote MGHImageIO repo, update git tag</div><div>
   BUG: argument check in LBFGSB too restrictive</div><div>   COMP: extend test for HistogramMatchingImageFilter to more pixel types</div><div>   COMP: HistogramMatchingFilterTest problem with ITKV3_COMPATIBILITY</div>
<div>Â Â Â COMP: Make sscanf format & variable match types</div><div>Â Â Â BUG: Fix tests that fail with Intel ICPC compiler on Linux</div><div>Â Â Â ENH: Avoid use of cast in ImageToImageMetricV4</div><div>Â Â Â BUG: DCMTKFileReader erroneously propogating exceptions</div>
<div><br></div><div>Kishore Mosaliganti (8):</div><div>Â Â Â ENH: Allow visualization of initial level-set</div><div>Â Â Â ENH: Add Set/GetNumberOfThreads for evolution</div><div>Â Â Â ENH: New binary mask term with test</div>
<div>Â Â Â ENH: Set/Get number of threads for Whitaker evolution class</div><div>Â Â Â BUG: Non-square images mesh not specified correctly</div><div>Â Â Â ENH: Set the scaling factor of the level-set function</div><div>Â Â Â ENH: Added new overlap penalty term and test</div>
<div>Â Â Â ENH: Level-set domains different from image domain</div><div><br></div><div>Luis Ibanez (7):</div><div>Â Â Â STYLE: Fixed miscelaneous style errors.</div><div>Â Â Â DOC: Removed Doxygen \example tags for Tests.</div>
<div>Â Â Â COMP: Fix warnings in matrix division by scalar.</div><div>Â Â Â COMP: Attempt to fix warning about \param.</div><div>Â Â Â BUG: Fixed while loop condition.</div><div>Â Â Â DOC: Better description of what the code is doing.</div>
<div>Â Â Â BUG: Memory leak. Reported by Coverity.</div><div><br></div><div>Mark Hiner (5):</div><div>Â Â Â BUG: Wrong classpath separator on Windows</div><div>Â Â Â BUG: Wrong classpath separator on Windows</div><div>Â Â Â ENH: Updated SCIFIO remote reference</div>
<div>   STYLE: update SCIFIO module name</div><div>   BUG: Update loci_tools to 4.4.9</div><div><br></div><div>Mark Palmeri (1):</div><div>   STYLE: correct syntax in Usage line</div><div><br></div><div>Martin Müllenhaupt (2):</div>
<div>Â Â Â COMP: host platform source dir check</div><div>Â Â Â COMP: host platform source dir check</div><div><br></div><div>Matt Clarkson (4):</div><div>Â Â Â ENH: Test upper and lower bound of histogram.</div><div>Â Â Â BUG: Include upper bound in last histogram bin.</div>
<div>Â Â Â BUG: Updated mean and standard deviation test values.</div><div>Â Â Â BUG: Update test data due to changes in itkHistogram.hxx</div><div><br></div><div>Matthew McCormick (107):</div><div>Â Â Â ENH: Bump CMakeLists.txt version to 4.5.0.</div>
<div>Â Â Â BUG: Remove non-existant GeSignaHDx data references.</div><div>Â Â Â ENH: Add server URL to ArchiveTestingData script.</div><div>Â Â Â ENH: Add <a href="http://slicer.kitware.com">slicer.kitware.com</a> to the list of ExternalData resources.</div>
<div>Â Â Â COMP: OpenJPEG #ifdef WIN32 not reliable ITK-3101.</div><div>Â Â Â DOC: Improve grammar in transform float type migration guide.</div><div>Â Â Â STYLE: Style fixes for MINCTransformIO.</div><div>Â Â Â BUG: Remove non-existant GeSignaHDx data references.</div>
<div>Â Â Â BUG: Regenerate HeaderTests' after .hxx files are removed.</div><div>Â Â Â COMP: Update MINCTransformIO for templated transforms.</div><div>Â Â Â COMP: Do not warn about unused typedefs.</div><div>Â Â Â COMP: Fix argument 'buffer' might be clobbered on GCC 4.8.</div>
<div>Â Â Â COMP: Wrap TransformBaseTemplate, Transform, and TransformFile{Reader,Writer}.</div><div>Â Â Â DOC: SingelThreaded -> SingleThreaded in Doxygen Group.</div><div>Â Â Â ENH: Change PATCH version for v4.4.1 release.</div>
<div>Â Â Â BUG: Add missing ITKOpenJPEG dependency for ITKReview Module.</div><div>Â Â Â COMP: ITKOpenJPEG EXCLUDE_FROM_ALL.</div><div>Â Â Â COMP: Fix invalid Doxygen LaTeX formula.</div><div>Â Â Â BUG: Fix Module_Review enable with a single configure.</div>
<div>Â Â Â COMP: Wrap cost functions for templated precision.</div><div>Â Â Â BUG: Fix Module_Review enable with a single configure.</div><div>Â Â Â DOC: Fix GradientDescentOptimizer doc grammar.</div><div>Â Â Â BUG: Using consistent naming for Transform template name change.</div>
<div>Â Â Â BUG: Remove unused QUASI_NEWTON_STEP_ERROR.</div><div>Â Â Â COMP: Do not try to include float.h for MinGW.</div><div>Â Â Â STYLE: TScalarType -> TScalar</div><div>Â Â Â COMP: Fix NIFTI CMake variable separation warning.</div>
<div>Â Â Â ENH: Use Transform::Clone() in ImageToImageMetric.</div><div>Â Â Â COMP: Remove redundant Typename structs. #3195.</div><div>Â Â Â STYLE: Fix include guard in level set visualization.</div><div>Â Â Â ENH: Use file(COPY .. instead of exec_process.</div>
<div>Â Â Â COMP: Fix transform wrapping errors with ITK_WRAP_double OFF.</div><div>Â Â Â DOC: Fix spelling errors in FourierDescriptors1.cxx.</div><div>Â Â Â BUG: Fix ITK_USE_REVIEW compatibility set syntax.</div><div>Â Â Â COMP: Avoid MetaIO config conflict with USE_SYSTEM_GDCM.</div>
<div>Â Â Â BUG: itkSingleLevelSetsv4WhitakerImage2DTest output clobber.</div><div>Â Â Â ENH: Test conversion writing float transform with templateless writer.</div><div>Â Â Â BUG: BMPImageIO buffer size computation.</div>
<div>Â Â Â COMP: Bump GCCXML version.</div><div>Â Â Â Revert "BUG: Exclude ITKReview when ITK_USE_REVIEW if off."</div><div>Â Â Â Revert "BUG: Exclude ITKReview when ITK_USE_REVIEW if off."</div><div>Â Â Â COMP: Do not try to include float.h for MinGW.</div>
<div>Â Â Â BUG: itkSingleLevelSetsv4WhitakerImage2DTest output clobber.</div><div>Â Â Â COMP: Avoid MetaIO config conflict with USE_SYSTEM_GDCM.</div><div>Â Â Â COMP: Bump GCCXML version.</div><div>Â Â Â ENH: Bump version to 4.4.2.</div>
<div>Â Â Â COMP: Fix LevelSetsv4Visualization against VTK5.</div><div>Â Â Â BUG: Fix LevelSetsv4Visualization Doxygen group.</div><div>Â Â Â BUG: Add QuickViewTest baseline for dash5ubuntu.</div><div>Â Â Â BUG: Exclude all VTK headers from the header test.</div>
<div>Â Â Â ENH: Improve ImageRegionReverseConstIterator doc.</div><div>Â Â Â COMP: Add missing wrapping for ImageSourceCommon.</div><div>Â Â Â COMP: Add missing VectorContainer instantiations for PointSet.</div><div>Â Â Â STYLE: Use prefix increment in WeightedCovarianceSampleFilter.</div>
<div>Â Â Â STYLE: LabelMap related style fixes.</div><div>Â Â Â BUG: LabelMapToLabelImageFilter wrong superclass in itkTypeMacro.</div><div>Â Â Â BUG: MeasurementVectorSizeType in PointSetToListSampleAdaptor.</div><div>Â Â Â BUG: Re-use Superclass typedef's in LabelMapToLabelImageFilter.</div>
<div>Â Â Â COMP: TranformIOBase unused GetTypeNameString function.</div><div>Â Â Â COMP: TransformFileWriter unused AddToTransformList.</div><div>Â Â Â STYLE: Fix KWStyleCodeTest - unnecessary semi-colons.</div><div>Â Â Â COMP: Update MINCTransformIO for GetTypeNameString method.</div>
<div>Â Â Â BUG: Fix uninitialized variables in N4BiasFieldCorrectionImageFilter.</div><div>Â Â Â ENH: Remove unused scripts in Utilities/Dart.</div><div>Â Â Â BUG: Fix uninitialized variables in N4BiasFieldCorrectionImageFilter.</div>
<div>Â Â Â ENH: Add maintenance script to visualize test times.</div><div>Â Â Â ENH: Add a RUNS_LONG label to long running tests.</div><div>Â Â Â BUG: Enable MRC IO in UseITK whenever the ITKReview module is enabled.</div>
<div>Â Â Â BUG: Fix Wrapping link to VtkGlue with VTK 6.</div><div>Â Â Â COMP: Remove multiple definition of PushBackTransformList.</div><div>Â Â Â COMP: Fix NIFTI CMake variable separation warning.</div><div>Â Â Â BUG: ImageToImageFilter different Input2 pixel type does not stream. #3214</div>
<div>Â Â Â COMP: Clean up use of Dimensions in MetaImageIO.</div><div>Â Â Â COMP: Conditionalize insane "#define inline" in libtiff</div><div>Â Â Â COMP: QuadrilateralCell Out-of-bounds-write.</div><div>Â Â Â COMP: Out-of-bounds access GaussianDerivativeImageFunction.</div>
<div>Â Â Â ENH: Use CompensatedSummation in GaussianDerivativeImageFunction.</div><div>Â Â Â ENH: Improve const correctness of QuadrilateralCell.</div><div>Â Â Â BUG: Add double-conversion license.</div><div>Â Â Â ENH: Add check for LICENSE change on double-conversion update.</div>
<div>Â Â Â BUG: Fix removal of temporary double-conversion repository.</div><div>Â Â Â COMP: Catch TestDriver ExceptionObject.</div><div>Â Â Â BUG: Add missing OpenJPEG LICENSE file.</div><div>Â Â Â BUG: Add missing PNG license.</div>
<div>Â Â Â BUG: AntiAliasBinaryImageFilter needs SetUseImageSpacing(false).</div><div>Â Â Â DOC: Flat refers to binary in FlatStructuringElement.</div><div>Â Â Â BUG: Examples should not have namespace KWStyle check.</div>
<div>Â Â Â DOC: Recommend newer BSplineTransform over BSplineDeformableTransform.</div><div>Â Â Â COMP: Do not warn about unused typedefs.</div><div>Â Â Â BUG: 14th Ann Incorrect enum declaration.</div><div>Â Â Â COMP: 14th Ann uninitialized scalar field.</div>
<div>Â Â Â STYLE: Empty lines exceed 3.</div><div>Â Â Â COMP: 14th Ann operator= should return TreeIteratorBase &</div><div>Â Â Â BUG: Incorrect CDash URL in CTestConfig.cmake.</div><div>Â Â Â DOC: Remove reference to missing AddFileNames method.</div>
<div>Â Â Â COMP: TIFFImageIO: use types defined in itkIntTypes.h.</div><div>Â Â Â COMP: 14th Ann Uninitialized pointer field.</div><div>Â Â Â COMP: 14th Ann m_ChangePosition not initialized in constructor.</div><div>Â Â Â PERF: 14th Ann TreeNode: prefer prefix ++/--</div>
<div>Â Â Â COMP: 14th Ann *Command m_This not initialized.</div><div>Â Â Â STYLE: 14th Ann Reduce variable scope.</div><div>Â Â Â STYLE: 14th Ann reduce scope of variables.</div><div>Â Â Â STYLE: 14th Ann operator= return Self &.</div>
<div>Â Â Â PERF: 14th Ann prefix ++ operator on non-primative types.</div><div>Â Â Â STYLE: 14th Ann reduce variable scope.</div><div>Â Â Â ENH: Bump GCCXML to latest version.</div><div>Â Â Â ENH: Update doxygen.config for 1.8.5.</div>
<div><br></div><div>Mickael Savinaud (1):</div><div>Â Â Â COMP: fix compiler error from visual studio 2013</div><div><br></div><div>Nick Tustison (2):</div><div>Â Â Â ENH: Â Added B-spline registration test.</div><div>Â Â Â ENH: Â Accessing optimizer weights from the methods.</div>
<div><br></div><div>Olivier Commowick (4):</div><div>Â Â Â COMP: Add cmake tr1 namespace check for macos clang</div><div>Â Â Â COMP: Use ZeroValue instead of Zero for clang macos 10.9 compilation</div><div>Â Â Â COMP: Use ZeroValue instead of Zero for clang macos 10.9 compilation</div>
<div>Â Â Â COMP: Add cmake tr1 namespace check for macos clang</div><div><br></div><div>Pew-Thian Yap (1):</div><div>Â Â Â BUG: Defined equality and inequality operators.</div><div><br></div><div>Sean McBride (1):</div><div>
   COMP: Fixed compiler error in C++11</div><div><br></div><div>Simon Alexander (1):</div><div>   COMP: compilation failures encountered with Visual Studio 2013</div><div><br></div><div>Stephen Aylward (7):</div><div>
   BUG: Fixed bugs in Form and hidden virtual funcs in Image</div><div>   COMP: Fixed unused variable warnings in tests</div><div>   COMP: Disable tests since paths are set wrong in VTK</div><div>   BUG: Fixed bugs in Form and hidden virtual funcs in Image</div>
<div>Â Â Â COMP: Fixed unused variable warnings in tests</div><div>Â Â Â COMP: Disable tests since paths are set wrong in VTK</div><div>Â Â Â COMP: Fix warnings from VTK dashboard, contributed by Sean McBride</div><div><br>
</div><div>Sureerat Reaungamornrat (1):</div><div>Â Â Â ENH: Make SetFixedImageRegion a virtual function</div><div><br></div><div>Taylor Braun-Jones (1):</div><div>Â Â Â COMP: Remove unused TransformFileWriter::m_Precision ivar</div>
<div><br></div><div>Tobias Maier (2):</div><div>Â Â Â BUG: VTKImageIO did not respect endianness for streamed writing/reading</div><div>Â Â Â BUG: Uninitialized value in VTKImageIOStreamTest</div><div><br></div><div>Vladimir S. FONOV (6):</div>
<div>Â Â Â BUG: Fixing small bugs in MINC IO Module</div><div>Â Â Â COMP: Fixed building review statistics with gcc 4.7.</div><div>Â Â Â BUG: Fixed bugs in Modules/IO/MINC and Modules/ThirdParty/MINC</div><div>Â Â Â ENH: Added adapter class to use general_transform API from MINC</div>
<div>Â Â Â ENH: Added adapter class to use general_transform API from MINC</div><div>Â Â Â BUG: Fixed error handling in MINC IO</div><div><br></div><div>Xiaoxiao Liu (30):</div><div>Â Â Â DOC: Add a comment for "ITK_Common_EXPORTS"</div>
<div>Â Â Â ENH: Add a unit test for VectorImageToImageAdaptor.</div><div>Â Â Â COMP: Relax tolerance for a regression test.</div><div>Â Â Â ENH: Exclude ITKGDCM module when system GDCM is ON.</div><div>Â Â Â BUG: Exclude ITKReview when ITK_USE_REVIEW if off.</div>
<div>Â Â Â BUG: A fix for using sys installed GDCM.</div><div>Â Â Â BUG: ITK_USE_Review did not turn Review module ON.</div><div>Â Â Â ENH: Simplify the steps to build remote modules.</div><div>Â Â Â ENH: Turn remote module LSTK off by default.</div>
<div>Â Â Â ENH: Deprecate ITK_USE_REVIEW.</div><div>Â Â Â DOC: Migration guide for ITK_USE_REVIEW deprecation.</div><div>Â Â Â ENH: Remote module names need to be consistent.</div><div>Â Â Â COMP: New baseline image for MultiResImageRegistrationTest.</div>
<div>Â Â Â PERF: Remove redundant CMake variables.</div><div>Â Â Â DOC: Sort the module enabling messages by names.</div><div>Â Â Â ENH: Exclude ITKGDCM module when system GDCM is ON.</div><div>Â Â Â BUG: A fix for using sys installed GDCM.</div>
<div>Â Â Â COMP: New baseline image for MultiResImageRegistrationTest.</div><div>Â Â Â ENH: Remove "ITK" prefix from remote modules.</div><div>Â Â Â BUG: Update LSTK module tag.</div><div>Â Â Â STYLE: Extract module dependency code to a separate file.</div>
<div>Â Â Â COMP: Fix LSTK warning.</div><div>Â Â Â COMP: Fix cmake warnings on EXCLUDE_FROM_ALL.</div><div>Â Â Â DOC: Better warning message for ITK_BUILD_ALL_MODULES.</div><div>Â Â Â BUG: Coverity resrouce leak in itkQuadEdgeTest1.</div>
<div>Â Â Â COMP: Fix coverity bug in itkQuadEdgeTest.</div><div>Â Â Â BUG: Resource leak in testMetaObject.cxx.</div><div>Â Â Â COMP: Coverity scan resource leak in itkQuadEdgeTest.</div><div>Â Â Â BUG: Fix typos in globalIndexNames.</div>
<div>Â Â Â BUG: Fix typos in globalIndexNames.</div><div><br></div></div>