<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
<div class="moz-cite-prefix">Dear ITK community,<br>
<br>
I solved the problem using c3d_affine_tool:<br>
c3d_affine_tool -ref ref_img_for_fsl.nii.gz -src
moving_img_for_fsl.nii.gz fsl_transformation.mat -fsl2ras -oitk
itk_transformation.tfm <br>
After this command I changed the string
"MatrixOffsetTransformBase_double_3_3" in
"AffineTransform_double_3_3".<br>
It works now (in my case at least).<br>
<br>
Thanks for your support.<br>
<br>
Paolo<br>
<br>
<br>
<br>
Il 10/12/2012 22:06, Paolo Zaffino ha scritto:<br>
</div>
<blockquote
cite="mid:1355173619.99219.YahooMailNeo@web171603.mail.ir2.yahoo.com"
type="cite">
<div style="color:#000; background-color:#fff; font-family:times
new roman, new york, times, serif;font-size:12pt">
<div style="font-family: 'times new roman', 'new york', times,
serif; font-size: 12pt;"><span></span></div>
<div>
<div><font face="times new roman, new york, times, serif">Hi,</font></div>
<div><font face="times new roman, new york, times, serif">Yes,
I know, there is c3d_affine_tool.</font></div>
<div><font face="times new roman, new york, times, serif">The
problem is that it writes a file in which the "Transform"
field is set to "MatrixOffsetTransformBase_double_3_3" and
ITK doesn't recognize it (an error is raised).</font></div>
<div style="color: rgb(0, 0, 0); font-size: 16px; font-family:
'times new roman', 'new york', times, serif;
background-color: transparent; font-style: normal;"><font
face="times new roman, new york, times, serif"><br>
</font></div>
<div style="color: rgb(0, 0, 0); font-size: 16px; font-family:
'times new roman', 'new york', times, serif;
background-color: transparent; font-style: normal;"><font
face="times new roman, new york, times, serif"><br>
</font></div>
</div>
<div style="font-family: 'times new roman', 'new york', times,
serif; font-size: 12pt;">
<div style="font-family: 'times new roman', 'new york', times,
serif; font-size: 12pt;">
<div dir="ltr"> <font face="Arial" size="2">
<hr size="1"> <b><span style="font-weight:bold;">Da:</span></b>
Richard Beare <a class="moz-txt-link-rfc2396E" href="mailto:richard.beare@gmail.com"><richard.beare@gmail.com></a><br>
<b><span style="font-weight: bold;">A:</span></b> Paolo
Zaffino <a class="moz-txt-link-rfc2396E" href="mailto:p.zaffino@yahoo.it"><p.zaffino@yahoo.it></a> <br>
<b><span style="font-weight: bold;">Cc:</span></b>
<a class="moz-txt-link-rfc2396E" href="mailto:insight-users@itk.org">"insight-users@itk.org"</a> <a class="moz-txt-link-rfc2396E" href="mailto:insight-users@itk.org"><insight-users@itk.org></a> <br>
<b><span style="font-weight: bold;">Inviato:</span></b>
Lunedì 10 Dicembre 2012 21:29<br>
<b><span style="font-weight: bold;">Oggetto:</span></b>
Re: [Insight-users] FSL transformation to ITK
transformation<br>
</font> </div>
<br>
There are some tools in the itksnap/convert3D packages that
help with<br>
this. I can't remember the names offhand.<br>
<br>
On Tue, Dec 11, 2012 at 1:51 AM, Paolo Zaffino <<a
moz-do-not-send="true" ymailto="mailto:p.zaffino@yahoo.it"
href="mailto:p.zaffino@yahoo.it">p.zaffino@yahoo.it</a>>
wrote:<br>
> Dear ITK community,<br>
><br>
> I would "translate" a FSL transformation file (.mat)
into a ITK<br>
> transformation file (.tfm)<br>
> Has anyone any tips or code about this topic?<br>
> I found this:<br>
> <a moz-do-not-send="true"
href="http://www.na-mic.org/svn/NAMICSandBox/trunk/NonRigidRegistrationForEchoPlanarImaging/BSplineRegistration.cxx"
target="_blank">http://www.na-mic.org/svn/NAMICSandBox/trunk/NonRigidRegistrationForEchoPlanarImaging/BSplineRegistration.cxx</a><br>
> I compiled it without problems, but in runtime it
crashed (segmentation<br>
> fault).<br>
> Anyway reading that code doesn't seem that there is the
possibility to<br>
> convert the mat file...am I missing something?<br>
><br>
> Thank you very much.<br>
> Best regards.<br>
><br>
> Paolo<br>
><br>
> _____________________________________<br>
> Powered by <a class="moz-txt-link-abbreviated" href="http://www.kitware.com">www.kitware.com</a><br>
><br>
> Visit other Kitware open-source projects at<br>
> <a moz-do-not-send="true"
href="http://www.kitware.com/opensource/opensource.html"
target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
><br>
> Kitware offers ITK Training Courses, for more
information visit:<br>
> <a moz-do-not-send="true"
href="http://www.kitware.com/products/protraining.php"
target="_blank">http://www.kitware.com/products/protraining.php</a><br>
><br>
> Please keep messages on-topic and check the ITK FAQ at:<br>
> <a moz-do-not-send="true"
href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
><br>
> Follow this link to subscribe/unsubscribe:<br>
> <a moz-do-not-send="true"
href="http://www.itk.org/mailman/listinfo/insight-users"
target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
><br>
<br>
<br>
</div>
</div>
</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_____________________________________
Powered by <a class="moz-txt-link-abbreviated" href="http://www.kitware.com">www.kitware.com</a>
Visit other Kitware open-source projects at
<a class="moz-txt-link-freetext" href="http://www.kitware.com/opensource/opensource.html">http://www.kitware.com/opensource/opensource.html</a>
Kitware offers ITK Training Courses, for more information visit:
<a class="moz-txt-link-freetext" href="http://www.kitware.com/products/protraining.php">http://www.kitware.com/products/protraining.php</a>
Please keep messages on-topic and check the ITK FAQ at:
<a class="moz-txt-link-freetext" href="http://www.itk.org/Wiki/ITK_FAQ">http://www.itk.org/Wiki/ITK_FAQ</a>
Follow this link to subscribe/unsubscribe:
<a class="moz-txt-link-freetext" href="http://www.itk.org/mailman/listinfo/insight-users">http://www.itk.org/mailman/listinfo/insight-users</a>
</pre>
</blockquote>
<br>
</body>
</html>