<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hello Mathieu,<div><br></div><div>I unfortunately can't help you with your WrapITK issue. But expanding VectorImage support for SimpleITK was in my agenda for this week.</div><div><br><div><div>On Apr 18, 2012, at 7:02 AM, Mathieu Stumpf wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hello,<br><br>Having to open a 4D image, I can't use SimpleITK which doesn't support<br>it yet (I get the error : Images of Vector Pixel types currently are not<br>supported).<br></div></blockquote><div><br></div><div>I would like to know more about this error. It is generated when you have a VectorImage and try to get a numpy array?</div><div><br></div><div>Also how did you read in your image?</div><div><br></div><div>Did you try using the VectorIndexSelctionCast function to select a component of the VectorImage? Then convert it numpy?</div><div><br></div><div>I very much would like know the features that are missing in SimpleITK to better support VectorImages for 4D image processing.</div><div><br></div><div>Thanks,</div><div>Brad</div><div><br></div><br><blockquote type="cite"><div><br>So I turn back to ITK and its included python wrapper. So I looked in<br>the nice Examples to see how to open some files, but I'm not able to run<br>a simple example :<br> ~/src/itk-git/ITK/Examples$ python IO/DicomSliceRead.py <br> Traceback (most recent call last):<br> File "IO/DicomSliceRead.py", line 24, in <module><br> from InsightToolkit import *<br> File "/usr/local/lib/ITK-4.1/Python/InsightToolkit.py", line 75, in <module><br> from ITKMetricsv4Python import *<br> ImportError: No module named ITKMetricsv4Python<br><br>What's wrong, the only installed ITKMetrics file I found in my<br>installation directory was :<br> /usr/local/lib/cmake/ITK-4.1/Modules/ITKMetricsv4.cmake<br><br>ITK was already compiled and installed with the python wrapper, so I<br>don't see what eventual step I messed.<br></div></blockquote><div><br></div><div>Did you compile WrapITK your self? Did you try running out of the build directories? Perhaps there is some step missing in the current installation.</div><br><blockquote type="cite"><div><br>Kind regards,<br>mathieu<br><br>_____________________________________<br>Powered by <a href="http://www.kitware.com">www.kitware.com</a><br><br>Visit other Kitware open-source projects at<br><a href="http://www.kitware.com/opensource/opensource.html">http://www.kitware.com/opensource/opensource.html</a><br><br>Kitware offers ITK Training Courses, for more information visit:<br>http://www.kitware.com/products/protraining.php<br><br>Please keep messages on-topic and check the ITK FAQ at:<br>http://www.itk.org/Wiki/ITK_FAQ<br><br>Follow this link to subscribe/unsubscribe:<br>http://www.itk.org/mailman/listinfo/insight-users<br></div></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">========================================================</font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Bradley Lowekamp<span class="Apple-converted-space"> </span><span class="Apple-converted-space"> </span></font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Medical Science and Computing for</font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Office of High Performance Computing and Communications</font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">National Library of Medicine<span class="Apple-converted-space"> </span></font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; "><a href="mailto:blowekamp@mail.nih.gov">blowekamp@mail.nih.gov</a></font></p><br class="Apple-interchange-newline"></span></div></span></span><br class="Apple-interchange-newline">
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