Brad,<br><br>Ah, the source directory... and not the binary directory. Thanks!<br><br>A major hurdle to overcome with the installation is the fact that R (I am using R 2.14.1) now requires complete man pages with all information filled in! Given the number of files in the man/ directory <br>
<br><span style="font-family:courier new,monospace">ls SimpleITK/man/ | wc</span><br style="font-family:courier new,monospace"><span style="font-family:courier new,monospace"> 3169 3169 118025</span><br><br>an automated method must be implemented in order to install SimpleITK as an R package. <br>
<br>Also, the manual copying of "libSimpleITK.so" is slightly non-standard. I know that a customized installation process is allowed, but I don't know how it would be applied to SimpleITK. <br><br>I would recommend engaging the R-developer mailing list to get some advice on brining together SimpleITK (the ITK version) and SimpleITK (the R package... maybe RITK or rITK?). <br>
<br>I'll keep trying as a dynamic library instead of a full-on package.<br><br>Happy New Year!<br><br>Brandon<br><br><div class="gmail_quote">On 31 December 2011 18:11, Bradley Lowekamp <span dir="ltr"><<a href="mailto:blowekamp@mail.nih.gov">blowekamp@mail.nih.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hello Brandon,<div><br></div><div>The particular files you looking for are in the SimpleITK source directory not the build. You will need both the DESCRIPTION and the zzz.R files from the {SIMPLEITK_SOURCE}/Wrapping/R_Package directory.</div>
<div><br></div><div>We have been calling R a Tier 2 or Tier 3 language in SimpleITK because is not as well supported as the other wrapped languages such as Python, Java, CSharp or even Ruby, or TCL. The primary reason for this is that we have not gotten the automatic testing working for R, so that it will show up on the nightly dashboard. Additionally, we also are hoping for contribution from the community to get the R language specific features polished and up to the expected R standard conventions.</div>
<div><br></div><div>I hope this helps you with getting SimpleITK working R,</div><div><br></div><div>Brad</div><div><br><div>
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<p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font style="font:normal normal normal 12px/normal Helvetica" face="Helvetica" size="3">Bradley Lowekamp<span> </span><span> </span></font></p><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px">
<font style="font:normal normal normal 12px/normal Helvetica" face="Helvetica" size="3">Medical Science and Computing for</font></p><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font style="font:normal normal normal 12px/normal Helvetica" face="Helvetica" size="3">Office of High Performance Computing and Communications</font></p>
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<font style="font:normal normal normal 12px/normal Helvetica" face="Helvetica" size="3"><a href="mailto:blowekamp@mail.nih.gov" target="_blank">blowekamp@mail.nih.gov</a></font></p></div></div></span></span>
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<br><div><div><div class="h5"><div>On Dec 31, 2011, at 9:28 AM, Brandon Whitcher wrote:</div><br></div></div><blockquote type="cite"><div><div class="h5">Dear ITK/SimpleITK experts,<br><br>I have installed SimpleITK by turning off all wrapping facilities except WRAP_R. I am now following the instructions in<br>
<br><div style="margin-left:40px"><a href="http://www.itk.org/SimpleITKDoxygen/html/Wrapping.html" target="_blank">http://www.itk.org/SimpleITKDoxygen/html/Wrapping.html</a><br>
</div><br>Specifically, <br><br><ul><li>6) Copy the file</li></ul>
<div><pre> SimpleITK/Wrapping/R_Package/DESCRIPTION
</pre></div><p> into the current</p>
<div><pre> SimpleITK/DESCRIPTION
</pre></div>...but I cannot find the file Wrapping/R_package/DESCRIPTION in my SimpleITK-binary installation. Where is this file?<br><br>thank-you,<br><br>Brandon<br><br></div></div>
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