<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40"><head><meta http-equiv=Content-Type content="text/html; charset=utf-8"><meta name=Generator content="Microsoft Word 12 (filtered medium)"><style><!--
/* Font Definitions */
@font-face
{font-family:Batang;
panose-1:2 3 6 0 0 1 1 1 1 1;}
@font-face
{font-family:宋体;
panose-1:2 1 6 0 3 1 1 1 1 1;}
@font-face
{font-family:宋体;
panose-1:2 1 6 0 3 1 1 1 1 1;}
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
@font-face
{font-family:"Malgun Gothic";
panose-1:0 0 0 0 0 0 0 0 0 0;}
@font-face
{font-family:Consolas;
panose-1:2 11 6 9 2 2 4 3 2 4;}
@font-face
{font-family:"\@Batang";
panose-1:2 3 6 0 0 1 1 1 1 1;}
@font-face
{font-family:"\@宋体";
panose-1:2 1 6 0 3 1 1 1 1 1;}
@font-face
{font-family:"\@Malgun Gothic";}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0in;
margin-bottom:.0001pt;
font-size:12.0pt;
font-family:"Times New Roman","serif";}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{mso-style-priority:99;
color:purple;
text-decoration:underline;}
pre
{mso-style-priority:99;
mso-style-link:"HTML 预设格式 Char";
margin:0in;
margin-bottom:.0001pt;
font-size:10.0pt;
font-family:"Courier New";}
span.apple-style-span
{mso-style-name:apple-style-span;}
span.HTMLChar
{mso-style-name:"HTML 预设格式 Char";
mso-style-priority:99;
mso-style-link:"HTML 预设格式";
font-family:Consolas;}
span.EmailStyle20
{mso-style-type:personal-reply;
font-family:"Calibri","sans-serif";
color:#1F497D;}
.MsoChpDefault
{mso-style-type:export-only;}
@page WordSection1
{size:8.5in 11.0in;
margin:1.0in 1.25in 1.0in 1.25in;}
div.WordSection1
{page:WordSection1;}
--></style><!--[if gte mso 9]><xml>
<o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
<o:shapelayout v:ext="edit">
<o:idmap v:ext="edit" data="1" />
</o:shapelayout></xml><![endif]--></head><body lang=EN-US link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Hi Dawood,<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Thanks very much for your help!<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Could you suggest one specific edge detection filter in the ITK?<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>In my case, I need to shear and inflate the contours. Could you suggest which transformation function in the ITK is the best for these two changes? And how to apply the transformation function to shear and inflate the contours? Is it interactive?<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>And how to generate mask images after resampling?<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Sorry for my limited knowledge on these topics. I raised many questions.<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Best regards,<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Yang<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in'><p class=MsoNormal><b><span lang=ZH-CN style='font-size:10.0pt;font-family:宋体'>发件人</span></b><b><span style='font-size:10.0pt;font-family:宋体'>:</span></b><span style='font-size:10.0pt;font-family:宋体'> Dawood Masslawi [mailto:davoud_zzz@yahoo.com] <br><b><span lang=ZH-CN>发送时间</span>:</b> 2011</span><span lang=ZH-CN style='font-size:10.0pt;font-family:"Batang","serif"'>년</span><span style='font-size:10.0pt;font-family:宋体'> 3</span><span lang=ZH-CN style='font-size:10.0pt;font-family:"Batang","serif"'>월</span><span style='font-size:10.0pt;font-family:宋体'> 9</span><span lang=ZH-CN style='font-size:10.0pt;font-family:"Batang","serif"'>일</span><span lang=ZH-CN style='font-size:10.0pt;font-family:宋体'> </span><span lang=ZH-CN style='font-size:10.0pt;font-family:"Batang","serif"'>수요일</span><span lang=ZH-CN style='font-size:10.0pt;font-family:宋体'> </span><span lang=ZH-CN style='font-size:10.0pt;font-family:"Batang","serif"'>오전</span><span style='font-size:10.0pt;font-family:宋体'> 12:57<br><b><span lang=ZH-CN>收件人</span>:</b> yxp233@postech.ac.kr<br><b><span lang=ZH-CN>抄送</span>:</b> insight-users@itk.org<br><b><span lang=ZH-CN>主题</span>:</b> RE: Concept for edting segmented mask images<o:p></o:p></span></p></div><p class=MsoNormal><o:p> </o:p></p><table class=MsoNormalTable border=0 cellspacing=0 cellpadding=0><tr><td valign=top style='padding:0in 0in 0in 0in'><div id=yiv1189763500><table class=MsoNormalTable border=0 cellspacing=0 cellpadding=0><tr><td style='padding:0in 0in 0in 0in'><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Hi Xiaopeng,<o:p></o:p></span></p><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>You can use one of the available edge detection filters in the ITK to extract the boundary <o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>contours. Changing the shape of the contours could be a little bit more tricky, my<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>suggestion is to adapt one of the transformation functions in the ITK based on the kind of<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>change you want to induce in the contours (e.g. scaling, shearing, inflation and etc.). <o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Of course there are numerous other ways as well, but ultimately the best option depends<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>on the kind of change you want to make.<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>After resampling you should have no problems generating the mask images.<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Best regards,<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Dawood<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'><o:p> </o:p></span></p></div><div><pre>Dear Users,<o:p></o:p></pre><pre><o:p> </o:p></pre><pre> <o:p></o:p></pre><pre><o:p> </o:p></pre><pre>I utilized itk segmentation algorithm to extract the liver from CT images.<o:p></o:p></pre><pre>The results are a series of binary images (mask images). For editing the<o:p></o:p></pre><pre>binary images, for example deleting some part, I have an idea as follows.<o:p></o:p></pre><pre><o:p> </o:p></pre><pre> <o:p></o:p></pre><pre><o:p> </o:p></pre><pre>First, generating boundary contours from binary images.<o:p></o:p></pre><pre><o:p> </o:p></pre><pre>Second, changing the shape of the contours.<o:p></o:p></pre><pre><o:p> </o:p></pre><pre>Finally, generating mask images from the edited contours.<o:p></o:p></pre><pre><o:p> </o:p></pre><pre> <o:p></o:p></pre><pre><o:p> </o:p></pre><pre>Could you tell me whether this idea is feasible or not? If not, please give<o:p></o:p></pre><pre>me better ideas.<o:p></o:p></pre><pre><o:p> </o:p></pre><pre> <o:p></o:p></pre><pre><o:p> </o:p></pre><pre>Thanks,<o:p></o:p></pre><pre><o:p> </o:p></pre><pre>Yang<o:p></o:p></pre></div></td></tr></table></div></td></tr></table><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p></div></body></html>