Hi H-B,<br><br>You will only need to do image registration if you<br>want to combine more than one input image in <br>order to compute the segmentation.<br><br>In your current case, it seems that you don't<br>need to register images yet.<br>
<br><br> Regards,<br><br><br> Luis<br><br><br>--------------------------------------------------------<br><div class="gmail_quote">On Thu, Dec 2, 2010 at 12:56 PM, H-B <span dir="ltr"><<a href="mailto:h4cd@yahoo.com">h4cd@yahoo.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td style="font: inherit;" valign="top">
<div>Hi luis,</div>
<div> </div>
<div>ididn't andrestand the your question very well (this is not my first language).</div>
<div> </div>
<div>i think it is from MRI or CT but it is in png format and i have another collection by raw.</div>
<div> </div>
<div>there is pure from MRI and Ct but i didn't andrestand the format.</div>
<div> </div>
<div>By now i would not register any thing, i will start segmentation using VTK_SNAP or 3D Slicer. (i dont know what exactly the type of segmentation but i have to convert the data set to .vtk)</div><div class="im">
<div> </div>
<div>Regards</div>
<div> H.B<br><br>--- On <b>Thu, 12/2/10, Luis Ibanez <i><<a href="mailto:luis.ibanez@kitware.com" target="_blank">luis.ibanez@kitware.com</a>></i></b> wrote:<br></div>
</div><blockquote style="border-left: 2px solid rgb(16, 16, 255); padding-left: 5px; margin-left: 5px;"><div class="im"><br>From: Luis Ibanez <<a href="mailto:luis.ibanez@kitware.com" target="_blank">luis.ibanez@kitware.com</a>><br>
Subject: Re: [Insight-users] Registration for set of medical images<br>To: "H-B" <<a href="mailto:h4cd@yahoo.com" target="_blank">h4cd@yahoo.com</a>><br>Cc: "itk" <<a href="mailto:Insight-users@itk.org" target="_blank">Insight-users@itk.org</a>><br>
</div>Date: Thursday, December 2, 2010, 10:52 AM<div><div></div><div class="h5"><br><br>
<div>Hi H-B,<br><br>This is still quite unclear.<br><br>1) What are the modalities of the two images that you<br> think you should register (MR ? , CT ?...)<br><br>2) What segmentation method are you using ?<br><br>It will be helpful is you post a screen shot of your<br>
current results to a public web site so that we can<br>take a look.<br><br><br> Thanks<br><br><br> Luis<br><br><br>------------<br>
<div>On Thu, Dec 2, 2010 at 9:54 AM, H-B <span dir="ltr"><<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=h4cd@yahoo.com" rel="nofollow" target="_blank">h4cd@yahoo.com</a>></span> wrote:<br>
<blockquote style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<table border="0" cellpadding="0" cellspacing="0">
<tbody>
<tr>
<td valign="top">
<div>Dear Luis,</div>
<div> </div>
<div>i want to segment the organ and i wan the result be good as possible, when i try to segment an example (before i reach the visible humen data) it was not very good.</div>
<div>i thenk maybe it is registration problem. </div>
<div> </div>
<div>but as i see the registration done for two images (the image and the moving image)</div>
<div> </div>
<div>so i have to know the moving image and it is deficult</div>
<div> </div>
<div>andi send this message to know if i should do registration</div>
<div> </div>
<div>or it would be good after remesh using CGALA</div>
<div> </div>
<div>Regards</div>
<div> </div>
<div> H.B</div>
<div>
<div><br>--- On <b>Thu, 12/2/10, Luis Ibanez <i><<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=luis.ibanez@kitware.com" rel="nofollow" target="_blank">luis.ibanez@kitware.com</a>></i></b> wrote:<br></div></div>
<blockquote style="border-left: 2px solid rgb(16, 16, 255); padding-left: 5px; margin-left: 5px;">
<div><br>From: Luis Ibanez <<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=luis.ibanez@kitware.com" rel="nofollow" target="_blank">luis.ibanez@kitware.com</a>><br>Subject: Re: [Insight-users] Registration for set of medical images<br>
To: "H-B" <<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=h4cd@yahoo.com" rel="nofollow" target="_blank">h4cd@yahoo.com</a>><br>Cc: "itk" <<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=insight-users@itk.org" rel="nofollow" target="_blank">insight-users@itk.org</a>><br>
</div>Date: Thursday, December 2, 2010, 9:03 AM
<div>
<div></div>
<div><br><br>
<div>Hi H-B,<br><br>Thanks for the additional details.<br><br>However, you have not explained yet why is that<br>you think that you need to do image registration.<br><br>Are you anticipating to combine the RGB images<br>
of the Visible Human dataset with the MR and CT<br>ones ?<br><br><br> Luis<br><br><br>---------------------------------------<br>
<div>On Thu, Dec 2, 2010 at 3:51 AM, H-B <span dir="ltr"><<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=h4cd@yahoo.com" rel="nofollow" target="_blank">h4cd@yahoo.com</a>></span> wrote:<br>
<blockquote style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<table border="0" cellpadding="0" cellspacing="0">
<tbody>
<tr>
<td valign="top">
<div>Hi Luis,</div>
<div> </div>
<div>sory for late. I got the data from visible human project. i want to segment liver, kidny, and other organs.</div>
<div> </div>
<div>i wont segment it using ITK_SNAP or 3D Slicer. (as i think it is easer than programing it with itk)</div>
<div>in 3D slicer i want to use rubost static segmentation.</div>
<div> </div>
<div>Regards,</div>
<div> H.B<br><br>--- On <b>Tue, 11/30/10, Luis Ibanez <i><<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=luis.ibanez@kitware.com" rel="nofollow" target="_blank">luis.ibanez@kitware.com</a>></i></b> wrote:<br>
</div>
<blockquote style="border-left: 2px solid rgb(16, 16, 255); padding-left: 5px; margin-left: 5px;"><br>From: Luis Ibanez <<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=luis.ibanez@kitware.com" rel="nofollow" target="_blank">luis.ibanez@kitware.com</a>><br>
Subject: Re: [Insight-users] Registration for set of medical images<br>To: "H-B" <<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=h4cd@yahoo.com" rel="nofollow" target="_blank">h4cd@yahoo.com</a>><br>
Cc: "itk" <<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=insight-users@itk.org" rel="nofollow" target="_blank">insight-users@itk.org</a>><br>Date: Tuesday, November 30, 2010, 10:30 PM
<div>
<div></div>
<div><br><br>
<div>H-B,<br><br>It depends...<br><br>1) What is the content of your images ?<br><br>2) Do you have multiple modalities ?<br><br>3) What kind of segmentation are you planning to do ?<br><br><br> Luis<br><br><br>------------------------------------------------------------<br>
<div>On Sun, Nov 28, 2010 at 11:19 AM, H-B <span dir="ltr"><<a href="http://us.mc383.mail.yahoo.com/mc/compose?to=h4cd@yahoo.com" rel="nofollow" target="_blank">h4cd@yahoo.com</a>></span> wrote:<br>
<blockquote style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<table border="0" cellpadding="0" cellspacing="0">
<tbody>
<tr>
<td valign="top">
<div>Hello,</div>
<div> </div>
<div> </div>
<div>i want to segment objects from set of images (png or dcom).</div>
<div> </div>
<div>is the registration important as a preprocees for images? or it wouldn't affect?</div>
<div> </div>
<div> </div>
<div>Regards</div>
<div> </div>
<div> H.B</div></td></tr></tbody></table><br><br>_____________________________________<br>Powered by <a href="http://www.kitware.com/" rel="nofollow" target="_blank">www.kitware.com</a><br><br>Visit other Kitware open-source projects at<br>
<a href="http://www.kitware.com/opensource/opensource.html" rel="nofollow" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br><br>Kitware offers ITK Training Courses, for more information visit:<br><a href="http://www.kitware.com/products/protraining.html" rel="nofollow" target="_blank">http://www.kitware.com/products/protraining.html</a><br>
<br>Please keep messages on-topic and check the ITK FAQ at:<br><a href="http://www.itk.org/Wiki/ITK_FAQ" rel="nofollow" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br><br>Follow this link to subscribe/unsubscribe:<br>
<a href="http://www.itk.org/mailman/listinfo/insight-users" rel="nofollow" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br><br></blockquote></div><br></div></div></div></blockquote></td></tr></tbody></table>
<br><br>_____________________________________<br>Powered by <a href="http://www.kitware.com/" rel="nofollow" target="_blank">www.kitware.com</a><br><br>Visit other Kitware open-source projects at<br><a href="http://www.kitware.com/opensource/opensource.html" rel="nofollow" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
<br>Kitware offers ITK Training Courses, for more information visit:<br><a href="http://www.kitware.com/products/protraining.html" rel="nofollow" target="_blank">http://www.kitware.com/products/protraining.html</a><br><br>
Please keep messages on-topic and check the ITK FAQ at:<br><a href="http://www.itk.org/Wiki/ITK_FAQ" rel="nofollow" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br><br>Follow this link to subscribe/unsubscribe:<br>
<a href="http://www.itk.org/mailman/listinfo/insight-users" rel="nofollow" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br><br></blockquote></div><br></div></div></div></blockquote></td></tr></tbody></table>
<br></blockquote></div><br></div></div></div></blockquote></td></tr></tbody></table><br>
</blockquote></div><br>