<br>Hi Andriy,<br><br><br>You are always welcome to fix bugs in ITK :-)<br><br><br>However,<br>only the "gatekeeper" can commit code <br>to ITK Release Branches.<br><br><br>You can certainly commit bug fixes in the<br>
CVS HEAD. <br>(Please do so as often as you can....)<br><br>---<br><br>The procedure to do fixes in Release branches<br>is the following:<br><br>1) Report bug in MANTIS<br>2) Fix it in ITK CVS HEAD<br>3) Open another but report in MANTIS<br>
specific to ITK 3.20. <br>4) Assign the bug in (3) to the branch<br> gatekeeper (currently me...)<br>5) Gatekeeper checks the fix <br> in to the Branch.<br>6) Close but in (3)<br><br><br>BTW, currently the bug report described<br>
in Item (3) is<br><a href="http://public.kitware.com/Bug/view.php?id=11008">http://public.kitware.com/Bug/view.php?id=11008</a><br><br><br><br>This workflow will change as soon <br>as we move to Git. <br><br>It will actually be a lot more agile and<br>
distributed. We are counting on Git<br>workflows to help us harvest better the<br>brainpower of the larger ITK community.<br><br><br> Luis<br><br><br>-------------------------------------------------------<br><div class="gmail_quote">
On Mon, Jul 19, 2010 at 12:46 AM, Andriy Fedorov <span dir="ltr"><<a href="mailto:fedorov@bwh.harvard.edu">fedorov@bwh.harvard.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Luis,<br>
<br>
Thank you for the quick response! I guess I could fix this myself, but<br>
I was not sure what are the rules of committing to the release<br>
branch....<br>
<br>
If you don't forget, please let me know when the update is propagated<br>
to 3.20, so that I can update the Slicer code accordingly.<br>
<font color="#888888"><br>
AF<br>
</font><div><div></div><div class="h5"><br>
<br>
<br>
On Mon, Jul 19, 2010 at 00:42, Luis Ibanez <<a href="mailto:luis.ibanez@kitware.com">luis.ibanez@kitware.com</a>> wrote:<br>
><br>
> Hi Andi,<br>
><br>
> Thanks for reporting this oversight.<br>
><br>
> I just committed a fix to the CVS HEAD:<br>
><br>
> <a href="http://public.kitware.com/cgi-bin/viewcvs.cgi/Code/Common/itkTransformFactoryBase.cxx?root=Insight&r1=1.7&r2=1.8&sortby=date" target="_blank">http://public.kitware.com/cgi-bin/viewcvs.cgi/Code/Common/itkTransformFactoryBase.cxx?root=Insight&r1=1.7&r2=1.8&sortby=date</a><br>
><br>
><br>
> I will wait to see it Green in the continuous<br>
> builds tomorrow, before I commit the same<br>
> patch to the ITK 3.20 branch.<br>
><br>
> No need to wait until a new release...<br>
><br>
> All bug fixes will go into the ITK 3.20 branch,<br>
> as we focus on ITKv4.<br>
><br>
><br>
> Please let us know if you find any<br>
> other problems,<br>
><br>
><br>
> Thanks<br>
><br>
><br>
> Luis<br>
><br>
><br>
> ------------------------------------------------------------<br>
> On Fri, Jul 16, 2010 at 2:25 PM, Andriy Fedorov <<a href="mailto:fedorov@bwh.harvard.edu">fedorov@bwh.harvard.edu</a>><br>
> wrote:<br>
>><br>
>> Luis,<br>
>><br>
>> It appears that while the new release includes ScaleVersor3DTransform<br>
>> in stable Code, this transform is not registered with the<br>
>> TransformFactoryBase.<br>
>><br>
>> Is this a bug? If yes, can we fix this in 3.20, or this has to wait<br>
>> until the next release?<br>
>><br>
>> We are using this type of transform in Slicer, and right now we need<br>
>> to manually register the transform with the factory, we would like to<br>
>> avoid this, since we also need to re-register all the rest of the<br>
>> transforms when we add a new one.<br>
>><br>
>> Please advice<br>
>><br>
>> Andrey Fedorov<br>
>><br>
>><br>
>><br>
>><br>
>> On Thu, Jul 15, 2010 at 12:00, <<a href="mailto:insight-users-request@itk.org">insight-users-request@itk.org</a>> wrote:<br>
>> > Message: 2<br>
>> > Date: Thu, 15 Jul 2010 09:18:09 -0400<br>
>> > From: Luis Ibanez <<a href="mailto:luis.ibanez@kitware.com">luis.ibanez@kitware.com</a>><br>
>> > Subject: [Insight-users] ANNOUNCEMENT: ITK 3.20 RELEASED !<br>
>> > To: itk <<a href="mailto:Insight-users@itk.org">Insight-users@itk.org</a>>, Insight Developers<br>
>> > <<a href="mailto:Insight-developers@itk.org">Insight-developers@itk.org</a>><br>
>> > Message-ID:<br>
>> > <<a href="mailto:AANLkTinR1hYeqYo2bzrMjNIDQ2S4GBbNS59ZxrKd1J1E@mail.gmail.com">AANLkTinR1hYeqYo2bzrMjNIDQ2S4GBbNS59ZxrKd1J1E@mail.gmail.com</a>><br>
>> > Content-Type: text/plain; charset="iso-8859-1"<br>
>> ><br>
>> > We are pleased to announce the release of<br>
>> ><br>
>> ><br>
>> > ITK 3.20<br>
>> ><br>
>> ><br>
>> > Source files and download instructions are available at<br>
>> > <a href="http://itk.org/ITK/resources/software.html" target="_blank">http://itk.org/ITK/resources/software.html</a><br>
>> ><br>
>> ><br>
>> > The list of new files can be found at:<br>
>> > <a href="http://www.itk.org/Wiki/ITK_Release_3.20" target="_blank">http://www.itk.org/Wiki/ITK_Release_3.20</a><br>
>> ><br>
>> ><br>
>> > The list of changed files can be found at:<br>
>> > <a href="http://www.itk.org/Wiki/ITK_Release_3.20_Changed_From_Previous" target="_blank">http://www.itk.org/Wiki/ITK_Release_3.20_Changed_From_Previous</a><br>
>> ><br>
>> ><br>
>> ><br>
>> > Please let us know if you find any problems.<br>
>> ><br>
>> ><br>
>> > Thanks<br>
>> ><br>
>> ><br>
>> > Luis<br>
>> > -------------- next part --------------<br>
>> > An HTML attachment was scrubbed...<br>
>> > URL:<br>
>> > <<a href="http://www.itk.org/pipermail/insight-users/attachments/20100715/936af08b/attachment-0001.htm" target="_blank">http://www.itk.org/pipermail/insight-users/attachments/20100715/936af08b/attachment-0001.htm</a>><br>
>> ><br>
>> > ------------------------------<br>
>> ><br>
>> > Message: 3<br>
>> > Date: Thu, 15 Jul 2010 09:46:15 -0400<br>
>> > From: Luis Ibanez <<a href="mailto:luis.ibanez@kitware.com">luis.ibanez@kitware.com</a>><br>
>> > Subject: [Insight-users] ITK 3.20 --> ITK 4.0 Transition Plan : ITK :<br>
>> > CVS --> Git<br>
>> > To: itk <<a href="mailto:Insight-users@itk.org">Insight-users@itk.org</a>>, Insight Developers<br>
>> > <<a href="mailto:Insight-developers@itk.org">Insight-developers@itk.org</a>><br>
>> > Message-ID:<br>
>> > <<a href="mailto:AANLkTin1AHPsPB9PKJhqdmD5BplfOeLBy9AqEfZLxfP6@mail.gmail.com">AANLkTin1AHPsPB9PKJhqdmD5BplfOeLBy9AqEfZLxfP6@mail.gmail.com</a>><br>
>> > Content-Type: text/plain; charset="iso-8859-1"<br>
>> ><br>
>> > As many of you may know, we are working on<br>
>> > a major new version of ITK:<br>
>> ><br>
>> ><br>
>> > This will be ITKv4.<br>
>> ><br>
>> ><br>
>> ><br>
>> > The main goals for ITKv4 are:<br>
>> ><br>
>> > (1) Revising,<br>
>> > (2) Accelerating,<br>
>> > (3) Simplifying and<br>
>> > (4) Improving DICOM support in ITK.<br>
>> ><br>
>> ><br>
>> > To that end we have drafted a Transition Plan to go<br>
>> > from ITK 3.20 to ITKv4. The current form of this plan<br>
>> > is available in the Wiki page:<br>
>> ><br>
>> > <a href="http://www.itk.org/Wiki/ITK_Release_4/Migration_Plan" target="_blank">http://www.itk.org/Wiki/ITK_Release_4/Migration_Plan</a><br>
>> ><br>
>> ><br>
>> > A schematic representation of th plan is available at:<br>
>> ><br>
>> > <a href="http://www.itk.org/Wiki/File:ITKv4-TransitionPlanProposal.png" target="_blank">http://www.itk.org/Wiki/File:ITKv4-TransitionPlanProposal.png</a><br>
>> ><br>
>> ><br>
>> ><br>
>> > The intermediate Phases of the Transition Plan<br>
>> > have been sketched out in<br>
>> ><br>
>> > <a href="http://www.itk.org/Wiki/ITK_Release_4/Migration_Plan/Phases" target="_blank">http://www.itk.org/Wiki/ITK_Release_4/Migration_Plan/Phases</a><br>
>> ><br>
>> > an equivalent document is available at:<br>
>> > <a href="http://www.itk.org/Wiki/images/5/5c/ITKv4-TransitionPlan-Draft.pdf" target="_blank">http://www.itk.org/Wiki/images/5/5c/ITKv4-TransitionPlan-Draft.pdf</a><br>
>> ><br>
>> ><br>
>> ><br>
>> > Please share with us your impression on how<br>
>> > the current transition plan may impact your use<br>
>> > of ITK.<br>
>> ><br>
>> ><br>
>> > ---<br>
>> ><br>
>> ><br>
>> > At this point, we have executed:<br>
>> ><br>
>> > * Release of ITK 3.20 : July 15th<br>
>> ><br>
>> > We are now in the process of:<br>
>> ><br>
>> > * Porting ITK from CVS to Git.<br>
>> ><br>
>> > As we move to Git, a lot of effort is being invested<br>
>> > in preserving the CVS history.<br>
>> ><br>
>> > We anticipate that ITK-Git will be settle by the end of July.<br>
>> ><br>
>> ><br>
>> > It is therefore a good moment for you to start learning Git. :-)<br>
>> ><br>
>> > Resources are available at:<br>
>> > <a href="http://git-scm.com/documentation" target="_blank">http://git-scm.com/documentation</a><br>
>> ><br>
>> > We recommend that you start by watching this talk<br>
>> > that Linus Torvals gave at Google:<br>
>> ><br>
>> > <a href="http://www.youtube.com/watch?v=4XpnKHJAok8" target="_blank">http://www.youtube.com/watch?v=4XpnKHJAok8</a><br>
>> ><br>
>> > Then follow up with the official Git tutorial<br>
>> ><br>
>> > <a href="http://www.kernel.org/pub/software/scm/git/docs/gittutorial.html" target="_blank">http://www.kernel.org/pub/software/scm/git/docs/gittutorial.html</a><br>
>> ><br>
>> > ( but, please note that there are many other<br>
>> > resources available for learning Git )<br>
>> ><br>
>> ><br>
>> > --<br>
>> ><br>
>> ><br>
>> > We will appreciate any suggestions on how to<br>
>> > improve the Transition Plan, and how to minimize<br>
>> > the effort that users will have to invest for migrating<br>
>> > to ITKv4.<br>
>> ><br>
>> ><br>
>> ><br>
>> ><br>
>> > Thanks<br>
>> ><br>
>> ><br>
>> ><br>
>> > Luis<br>
>> > -------------- next part --------------<br>
>> > An HTML attachment was scrubbed...<br>
>> > URL:<br>
>> > <<a href="http://www.itk.org/pipermail/insight-users/attachments/20100715/7184d3d1/attachment-0001.htm" target="_blank">http://www.itk.org/pipermail/insight-users/attachments/20100715/7184d3d1/attachment-0001.htm</a>><br>
>> ><br>
>> > ------------------------------<br>
>> ><br>
>> > Message: 4<br>
>> > Date: Thu, 15 Jul 2010 15:06:06 +0000 (UTC)<br>
>> > From: Matt McCormick <<a href="mailto:matt@mmmccormick.com">matt@mmmccormick.com</a>><br>
>> > Subject: Re: [Insight-users] ITK 3.20 --&gt; ITK 4.0 Transition Plan :<br>
>> > ITK : CVS --&gt; Git<br>
>> > To: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a><br>
>> > Message-ID: <<a href="mailto:loom.20100715T170213-434@post.gmane.org">loom.20100715T170213-434@post.gmane.org</a>><br>
>> > Content-Type: text/plain; charset=us-ascii<br>
>> ><br>
>> > Luis Ibanez <luis.ibanez@...> writes:<br>
>> > Porting ITK from CVS to Git.As we move to Git, a lot of effort is being<br>
>> > invested<br>
>> > in preserving the CVS history.We anticipate that ITK-Git will be settle<br>
>> > by the<br>
>> > end of July.<br>
>> ><br>
>> > Huge commendations for making this change! It is very exciting. It<br>
>> > will make<br>
>> > doing development with and for ITK much easier.<br>
>> ><br>
>> > Matt<br>
>> ><br>
>> ><br>
>> ><br>
>> > ------------------------------<br>
>> ><br>
>> > Message: 5<br>
>> > Date: Thu, 15 Jul 2010 08:29:37 -0700 (PDT)<br>
>> > From: yasser salman <<a href="mailto:yass71@yahoo.com">yass71@yahoo.com</a>><br>
>> > Subject: [Insight-users] Fw: Mesh generation<br>
>> > To: Luis Ibanez <<a href="mailto:luis.ibanez@kitware.com">luis.ibanez@kitware.com</a>><br>
>> > Cc: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a><br>
>> > Message-ID: <<a href="mailto:594694.20826.qm@web50601.mail.re2.yahoo.com">594694.20826.qm@web50601.mail.re2.yahoo.com</a>><br>
>> > Content-Type: text/plain; charset="iso-8859-1"<br>
>> ><br>
>> ><br>
>> ><br>
>> > Hi Luis,<br>
>> ><br>
>> > I have a MRI brain volume, i wanna to do that:<br>
>> > 1- Extract the Brain only from the volume.??<br>
>> > 2- Segment Brain to Gray / White matter/ ?CFS.? (may be tumor in the<br>
>> > future will<br>
>> > be considered)<br>
>> > 3- Output this segmented volume to FEM (Ansys) .??<br>
>> > Could you please let me know the shortcut to do that<br>
>> > Regards,<br>
>> > Yasser<br>
>> ><br>
>> ><br>
>> ><br>
>> ><br>
>> ><br>
>> > ________________________________<br>
>> > From: Luis Ibanez <<a href="mailto:luis.ibanez@kitware.com">luis.ibanez@kitware.com</a>><br>
>> > To: yasser salman <<a href="mailto:yass71@yahoo.com">yass71@yahoo.com</a>><br>
>> > Cc: itk <<a href="mailto:Insight-users@itk.org">Insight-users@itk.org</a>><br>
>> > Sent: Sun, July 11, 2010 8:27:18 AM<br>
>> > Subject: Re: [Insight-users] Mesh generation<br>
>> ><br>
>> ><br>
>> > Hi Yasser,<br>
>> ><br>
>> > Do you need something more detailed than Skull-removal ?<br>
>> ><br>
>> > The first thing in MRI will be to evaluate whether<br>
>> > you need bias-field correction or not.<br>
>> ><br>
>> > Please provide more details on what you are trying to achieve.<br>
>> ><br>
>> ><br>
>> > ???? Thanks<br>
>> ><br>
>> ><br>
>> > ?????????? Luis<br>
>> ><br>
>> ><br>
>> ><br>
>> > ------------------------------------------------------------------------------<br>
>> ><br>
>> > On Sun, Jul 11, 2010 at 11:20 AM, yasser salman <<a href="mailto:yass71@yahoo.com">yass71@yahoo.com</a>><br>
>> > wrote:<br>
>> ><br>
>> > Hi Luis<br>
>> >><br>
>> >>?MRI<br>
>> >>Yasser<br>
>> >><br>
>> >><br>
>> >><br>
>> >><br>
>> > ________________________________<br>
>> > From: Luis Ibanez <<a href="mailto:luis.ibanez@kitware.com">luis.ibanez@kitware.com</a>><br>
>> >>To: yasser salman <<a href="mailto:yass71@yahoo.com">yass71@yahoo.com</a>><br>
>> >>Cc: itk <<a href="mailto:Insight-users@itk.org">Insight-users@itk.org</a>><br>
>> >>Sent: Sat, July 10, 2010 1:08:26 PM<br>
>> >>Subject: Re: [Insight-users] Mesh generation<br>
>> >><br>
>> >><br>
>> >>?Hi Yasser,<br>
>> >><br>
>> > >From what image modality ?<br>
>> >><br>
>> >><br>
>> >>????? Luis<br>
>> >><br>
>> >><br>
>> >>----------------------------------------<br>
>> >><br>
>> >>On Fri, Jul 9, 2010 at 6:43 PM, yasser salman <<a href="mailto:yass71@yahoo.com">yass71@yahoo.com</a>> wrote:<br>
>> >><br>
>> >>Dear Luis,<br>
>> >>>i asking for an easy way to segment /extract the whole brain from head,<br>
>> >>>is it by using threshold tech., depending on histogram?<br>
>> >>>Regards ,<br>
>> >>>Yasser<br>
>> >>><br>
>> >>><br>
>> >>><br>
>> >>><br>
>> >><br>
>> >><br>
>> ><br>
>> ><br>
>> ><br>
>> > -------------- next part --------------<br>
>> > An HTML attachment was scrubbed...<br>
>> > URL:<br>
>> > <<a href="http://www.itk.org/pipermail/insight-users/attachments/20100715/5024a9ce/attachment-0001.htm" target="_blank">http://www.itk.org/pipermail/insight-users/attachments/20100715/5024a9ce/attachment-0001.htm</a>><br>
>> ><br>
>> > ------------------------------<br>
>> ><br>
>> > _______________________________________________<br>
>> > Insight-users mailing list<br>
>> > <a href="mailto:Insight-users@itk.org">Insight-users@itk.org</a><br>
>> > <a href="http://www.itk.org/mailman/listinfo/insight-users" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
>> ><br>
>> ><br>
>> > End of Insight-users Digest, Vol 75, Issue 26<br>
>> > *********************************************<br>
>> ><br>
><br>
><br>
</div></div></blockquote></div><br>