Hi Kaveh,<br><br>Yes,<br>you are welcome to post to this list any questions<br>related to papers in the Insight Journal.<br><br>About your specific question,<br>could you please run the following command ?<br><br> ctest -R RegistrationTest001 -V <br>
<br>and post the output to the list.<br><br><br>This will run that specific test and provide<br>details on the cause of the failure.<br><br><br><br> Thanks<br><br><br> Luis<br><br><br><br>---------------------------------------<br>
<div class="gmail_quote">On Sun, Aug 16, 2009 at 4:34 PM, Kaveh Kohan <span dir="ltr"><<a href="mailto:kaveh.kohan@yahoo.com">kaveh.kohan@yahoo.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div><div style="font-family: times new roman,new york,times,serif; font-size: 14pt;"><div>Hello all,<br><br><br>I am not sure I am allowed to ask questions about the code submitted to the Insight Journal or not. If it is the case, please refer to the right place.<br>
<br>I have a question about this paper:<br><br><div>Non-rigid Groupwise Registration using B-Spline Deformation Model</div>
<div>Balci S.K., Golland P., Wells W.M.</div><span><a href="http://www.insight-journal.org/browse/publication/173" target="_blank">http://www.insight-journal.org/browse/publication/173</a></span><br><br><br>Code compiles with no problem but it fails the tests:<br>
<br><br>I appreciate any help.<br><br>Regards,<br>Kaveh<br><br>>> make test<br>Running tests...<br>Start processing tests<br>Test project /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration<br>
1/ 72 Testing CreateRandImages001 Passed<br> 2/ 72 Testing RegistrationTest001 ***Exception: Other<br> 3/ 72 Testing WriteOutputsTest001 Passed<br> 4/ 72 Testing
CreateRandImages002 Passed<br> 5/ 72 Testing RegistrationTest002 ***Exception: Other<br> 6/ 72 Testing WriteOutputsTest002 Passed<br> 7/ 72 Testing CreateRandImages003 Passed<br>
8/ 72 Testing RegistrationTest003 ***Exception: Other<br> 9/ 72 Testing WriteOutputsTest003 Passed<br> 10/ 72 Testing CreateRandImages004 Passed<br> 11/ 72 Testing
RegistrationTest004 Passed <br> 14/ 72 Testing RegistrationTest005 ***Failed <br> 15/ 72 Testing WriteOutputsTest005 ***Exception: Other<br> 16/ 72 Testing CreateRandImages006 Passed<br>
17/ 72 Testing RegistrationTest006 ***Failed <br> 18/ 72 Testing WriteOutputsTest006 ***Exception: Other<br> 19/ 72 Testing CreateRandImages007 Passed<br> 20/ 72 Testing RegistrationTest007 ***Exception:
Other<br> 21/ 72 Testing WriteOutputsTest007 Passed<br> 22/ 72 Testing CreateRandImages008 Passed<br>.....<br><br>Here I have attached part of the log file for more information (sorry it is too long):<br>
<br>Start testing: Aug 16 15:21 EDT<br>----------------------------------------------------------<br>Changing directory into: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>
1/72 Testing: CreateRandImages001<br>1/72 Test: CreateRandImages001<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/CreateImageSetAffine" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/BrainWeb/brainweb1e1a10f20.mha"
"/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData001" "2" "on" <br>Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>
"CreateRandImages001" start time: Aug 16 15:21 EDT<br>Output:<br>----------------------------------------------------------<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData001/Images/0.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData001/Images/1.mhd<br>----------------------------------------------------------<br>"CreateRandImages001" end time: Aug 16 15:21 EDT<br>
"CreateRandImages001" time elapsed: 00:00:10<br>----------------------------------------------------------<br><br>2/72 Testing: RegistrationTest001<br>2/72 Test:
RegistrationTest001<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/GroupwiseRegistration" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/filenames001.txt" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/parameters001.txt" <br>
Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"RegistrationTest001" start time: Aug 16 15:21 EDT<br>Output:<br>----------------------------------------------------------<br>
message: Reading Image: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData001/Images/0.mhd<br>message: Reading Image:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData001/Images/1.mhd<br>message: Starting Registration <br>message: Registration using UnivariateEntropyMultiImageMetric<br>
message: Transform Type AffineTransform<br>message: Multiresolution level : 0<br>message: Number of total parameters : 24<br>message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 91<br>
message: Optimizer learning rate : 0.0001<br>message: Number of total pixels : 109350<br>message: Number of used pixels : 4418<br>Iter 000 000 1.227695 <br>Iter 010 010 1.098265 <br>Iter 020 020 1.054892 <br>
Iter 030 030 1.015671 <br>Iter 040 040 0.992513 <br>Iter 050 050 0.956442
<br>Iter 060 060 0.940513 <br>Iter 070 070 0.936067 <br>Iter 080 080 0.936119 <br>Iter 090 090 0.935719 <br>message: Registration using UnivariateEntropyMultiImageMetric<br>message: Transform Type AffineTransform<br>
message: Multiresolution level : 1<br>message: Number of total parameters : 24<br>message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 52<br>message: Optimizer learning rate : 0.000100<br>
message: Number of total pixels : 874800<br>message: Number of used pixels : 8836<br>Iter 100 008 0.930055 <br>Iter 110 018 0.930085 <br>Iter 120 028 0.930297 <br>Iter 130 038 0.929665 <br>Iter 140 048
0.929934 <br>message: Registration using UnivariateEntropyMultiImageMetric<br>message: Transform Type AffineTransform<br>message: Multiresolution level : 2<br>message: Number of total parameters : 24<br>message: Optimizertype : GradientDescentLineSearchOptimizer<br>
message: Optimizer # of Iter. to go : 29<br>message: Optimizer learning rate : 0.000100<br>message: Number of total pixels : 7069860<br>message: Number of used pixels : 17672<br>Iter 150 005 0.929710 <br>Iter 160 015 0.929916 <br>
Iter 170 025 0.929514 <br>message: Registration Completed <br>message: Time Report <br>terminate called after throwing an instance of 'itk::ExceptionObject'<br> what(): /home/kaveh/bin/InsightToolkit-3.10.1/Code/Common/itkResourceProbesCollectorBase.txx:50:<br>
itk::ERROR: The probe "5Total Time " does not exist. It can not be
stopped.<br>----------------------------------------------------------<br>"RegistrationTest001" end time: Aug 16 15:22 EDT<br>"RegistrationTest001" time elapsed: 00:01:27<br>----------------------------------------------------------<br>
<br>3/72 Testing: WriteOutputsTest001<br>3/72 Test: WriteOutputsTest001<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/ComputeOutputs" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/filenames001.txt" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/parameters001.txt" <br>
Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"WriteOutputsTest001" start time: Aug 16 15:22
EDT<br>Output:<br>----------------------------------------------------------<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/InputImage/Images/0.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/InputImage/Slices/0.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/InputImage/Images/1.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/InputImage/Slices/1.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/InputImage/MeanImages/Mean.mhd<br>
Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/InputImage/MeanImages/MeanSlice.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/InputImage/STDImages/STD.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/InputImage/STDImages/STDSlice.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/Images/0.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/Slices/0.jpg<br>Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/DeformationSlices/0.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/Images/1.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/Slices/1.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/DeformationSlices/1.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/MeanImages/Mean.mhd<br>Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/MeanImages/MeanSlice.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/STDImages/STD.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/Affine/STDImages/STDSlice.jpg<br>----------------------------------------------------------<br>
"WriteOutputsTest001" end time: Aug 16 15:23 EDT<br>"WriteOutputsTest001" time elapsed: 00:00:33<br>----------------------------------------------------------<br><br>4/72 Testing: CreateRandImages002<br>
4/72 Test: CreateRandImages002<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/CreateImageSetAffine"
"/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/BrainWeb/brainweb165a10f17.mha" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData002" "2" "on" <br>
Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"CreateRandImages002" start time: Aug 16 15:23 EDT<br>Output:<br>----------------------------------------------------------<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData002/Images/0.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData002/Images/1.mhd<br>
----------------------------------------------------------<br>"CreateRandImages002" end time: Aug 16 15:23 EDT<br>"CreateRandImages002" time elapsed:
00:00:14<br>----------------------------------------------------------<br><br>5/72 Testing: RegistrationTest002<br>5/72 Test: RegistrationTest002<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/GroupwiseRegistration" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/filenames002.txt" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/parameters002.txt" <br>
Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"RegistrationTest002" start time: Aug 16 15:23 EDT<br>Output:<br>----------------------------------------------------------<br>
message: Reading Image:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData002/Images/0.mhd<br>message: Reading Image: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData002/Images/1.mhd<br>
message: Starting Registration <br>message: Registration using UnivariateEntropyMultiImageMetric<br>message: Transform Type AffineTransform<br>message: Multiresolution level : 0<br>message: Number of total parameters : 24<br>
message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 91<br>message: Optimizer learning rate : 0.0001<br>message: Number of total pixels : 109350<br>message: Number of used pixels : 4418<br>
Iter 000 000 1.190699 <br>Iter 010 010 1.152962 <br>Iter 020 020 1.078033 <br>Iter 030
030 1.037346 <br>Iter 040 040 0.979855 <br>Iter 050 050 0.938906 <br>Iter 060 060 0.929191 <br>Iter 070 070 0.927413 <br>Iter 080 080 0.926543 <br>Iter 090 090 0.927394 <br>message: Registration using UnivariateEntropyMultiImageMetric<br>
message: Transform Type AffineTransform<br>message: Multiresolution level : 1<br>message: Number of total parameters : 24<br>message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 52<br>
message: Optimizer learning rate : 0.000100<br>message: Number of total pixels : 874800<br>message: Number of used pixels : 8836<br>Iter 100 008 0.922379 <br>Iter 110 018 0.922248
<br>Iter 120 028 0.922527 <br>Iter 130 038 0.922528 <br>Iter 140 048 0.922339 <br>message: Registration using UnivariateEntropyMultiImageMetric<br>message: Transform Type AffineTransform<br>message: Multiresolution level : 2<br>
message: Number of total parameters : 24<br>message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 29<br>message: Optimizer learning rate : 0.000100<br>message: Number of total pixels : 7069860<br>
message: Number of used pixels : 17672<br>Iter 150 005 0.921810 <br>Iter 160 015 0.921652 <br>Iter 170 025 0.921858 <br>message: Registration Completed <br>message: Time Report <br>terminate called after throwing an instance of 'itk::ExceptionObject'<br>
what():
/home/kaveh/bin/InsightToolkit-3.10.1/Code/Common/itkResourceProbesCollectorBase.txx:50:<br>itk::ERROR: The probe "5Total Time " does not exist. It can not be stopped.<br>----------------------------------------------------------<br>
"RegistrationTest002" end time: Aug 16 15:25 EDT<br>"RegistrationTest002" time elapsed: 00:01:31<br>----------------------------------------------------------<br><br>6/72 Testing: WriteOutputsTest002<br>
6/72 Test: WriteOutputsTest002<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/ComputeOutputs" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/filenames002.txt" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/parameters002.txt" <br>
Directory:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"WriteOutputsTest002" start time: Aug 16 15:25 EDT<br>Output:<br>----------------------------------------------------------<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/InputImage/Images/0.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/InputImage/Slices/0.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/InputImage/Images/1.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/InputImage/Slices/1.jpg<br>
Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/InputImage/MeanImages/Mean.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/InputImage/MeanImages/MeanSlice.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/InputImage/STDImages/STD.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/InputImage/STDImages/STDSlice.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/Images/0.mhd<br>Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/Slices/0.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/DeformationSlices/0.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/Images/1.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/Slices/1.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/DeformationSlices/1.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/MeanImages/Mean.mhd<br>
Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/MeanImages/MeanSlice.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/STDImages/STD.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration002/Affine/STDImages/STDSlice.jpg<br>----------------------------------------------------------<br>
"WriteOutputsTest002" end time: Aug 16 15:25 EDT<br>"WriteOutputsTest002" time elapsed: 00:00:33<br>----------------------------------------------------------<br><br>7/72 Testing: CreateRandImages003<br>
7/72 Test: CreateRandImages003<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/CreateImageSetAffine"
"/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/BrainWeb/brainweb1e5a10f17.mha" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData003" "2" "on" <br>
Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"CreateRandImages003" start time: Aug 16 15:25 EDT<br>Output:<br>----------------------------------------------------------<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData003/Images/0.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData003/Images/1.mhd<br>
----------------------------------------------------------<br>"CreateRandImages003" end time: Aug 16 15:26 EDT<br>"CreateRandImages003" time elapsed:
00:00:10<br>----------------------------------------------------------<br><br>8/72 Testing: RegistrationTest003<br>8/72 Test: RegistrationTest003<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/GroupwiseRegistration" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/filenames003.txt" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/parameters003.txt" <br>
Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"RegistrationTest003" start time: Aug 16 15:26 EDT<br>Output:<br>----------------------------------------------------------<br>
message: Reading Image:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData003/Images/0.mhd<br>message: Reading Image: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData003/Images/1.mhd<br>
message: Starting Registration <br>message: Registration using UnivariateEntropyMultiImageMetric<br>message: Transform Type AffineTransform<br>message: Multiresolution level : 0<br>message: Number of total parameters : 24<br>
message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 91<br>message: Optimizer learning rate : 0.0001<br>message: Number of total pixels : 109350<br>message: Number of used pixels : 4418<br>
Iter 000 000 1.245178 <br>Iter 010 010 1.110602 <br>Iter 020 020 0.998306 <br>Iter 030
030 0.951793 <br>Iter 040 040 0.942401 <br>Iter 050 050 0.942380 <br>Iter 060 060 0.941821 <br>Iter 070 070 0.942148 <br>Iter 080 080 0.941740 <br>Iter 090 090 0.942077 <br>message: Registration using UnivariateEntropyMultiImageMetric<br>
message: Transform Type AffineTransform<br>message: Multiresolution level : 1<br>message: Number of total parameters : 24<br>message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 52<br>
message: Optimizer learning rate : 0.000100<br>message: Number of total pixels : 874800<br>message: Number of used pixels : 8836<br>Iter 100 008 0.937660 <br>Iter 110 018 0.937802
<br>Iter 120 028 0.938248 <br>Iter 130 038 0.937815 <br>Iter 140 048 0.937590 <br>message: Registration using UnivariateEntropyMultiImageMetric<br>message: Transform Type AffineTransform<br>message: Multiresolution level : 2<br>
message: Number of total parameters : 24<br>message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 29<br>message: Optimizer learning rate : 0.000100<br>message: Number of total pixels : 7069860<br>
message: Number of used pixels : 17672<br>Iter 150 005 0.934868 <br>Iter 160 015 0.934439 <br>Iter 170 025 0.934178 <br>message: Registration Completed <br>message: Time Report <br>terminate called after throwing an instance of 'itk::ExceptionObject'<br>
what():
/home/kaveh/bin/InsightToolkit-3.10.1/Code/Common/itkResourceProbesCollectorBase.txx:50:<br>itk::ERROR: The probe "5Total Time " does not exist. It can not be stopped.<br>----------------------------------------------------------<br>
"RegistrationTest003" end time: Aug 16 15:27 EDT<br>"RegistrationTest003" time elapsed: 00:01:26<br>----------------------------------------------------------<br><br>9/72 Testing: WriteOutputsTest003<br>
9/72 Test: WriteOutputsTest003<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/ComputeOutputs" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/filenames003.txt" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/parameters003.txt" <br>
Directory:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"WriteOutputsTest003" start time: Aug 16 15:27 EDT<br>Output:<br>----------------------------------------------------------<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/InputImage/Images/0.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/InputImage/Slices/0.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/InputImage/Images/1.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/InputImage/Slices/1.jpg<br>
Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/InputImage/MeanImages/Mean.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/InputImage/MeanImages/MeanSlice.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/InputImage/STDImages/STD.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/InputImage/STDImages/STDSlice.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/Images/0.mhd<br>Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/Slices/0.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/DeformationSlices/0.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/Images/1.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/Slices/1.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/DeformationSlices/1.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/MeanImages/Mean.mhd<br>
Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/MeanImages/MeanSlice.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/STDImages/STD.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration003/Affine/STDImages/STDSlice.jpg<br>----------------------------------------------------------<br>
"WriteOutputsTest003" end time: Aug 16 15:27 EDT<br>"WriteOutputsTest003" time elapsed: 00:00:31<br>----------------------------------------------------------<br><br>10/72 Testing: CreateRandImages004<br>
10/72 Test: CreateRandImages004<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/CreateImageSetBspline"
"/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/BrainWeb/brainweb1e1a10f20.mha" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData004" "2" "on" <br>
Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"CreateRandImages004" start time: Aug 16 15:27 EDT<br>Output:<br>----------------------------------------------------------<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData004/Images/0.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData004/Images/1.mhd<br>
----------------------------------------------------------<br>"CreateRandImages004" end time: Aug 16 15:32 EDT<br>"CreateRandImages004" time elapsed:
00:04:14<br>----------------------------------------------------------<br><br>11/72 Testing: RegistrationTest004<br>11/72 Test: RegistrationTest004<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/GroupwiseRegistration" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/filenames004.txt" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/parameters004.txt" <br>
Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>"RegistrationTest004" start time: Aug 16 15:32 EDT<br>Output:<br>----------------------------------------------------------<br>
message: Reading Image:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData004/Images/0.mhd<br>message: Reading Image: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData004/Images/1.mhd<br>
message: Starting Registration <br>message: Registration using UnivariateEntropyMultiImageMetric<br>message: Transform Type AffineTransform<br>message: Multiresolution level : 0<br>message: Number of total parameters : 24<br>
message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 30<br>message: Optimizer learning rate : 0.0001<br>message: Number of total pixels : 109350<br>message: Number of used pixels : 4418<br>
Iter 000 000 1.128343 <br>Iter 010 010 1.121785 <br>Iter 020 020 1.120393 <br>Iter 030
030 1.128548 <br>message: Registration using UnivariateEntropyMultiImageMetric<br>message: Transform Type AffineTransform<br>message: Multiresolution level : 1<br>message: Number of total parameters : 24<br>message: Optimizertype : GradientDescentLineSearchOptimizer<br>
message: Optimizer # of Iter. to go : 17<br>message: Optimizer learning rate : 0.000100<br>message: Number of total pixels : 874800<br>message: Number of used pixels : 8836<br>Iter 040 009 1.137226 <br>message: Registration using UnivariateEntropyMultiImageMetric<br>
message: Transform Type AffineTransform<br>message: Multiresolution level : 2<br>message: Number of total parameters : 24<br>message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 9<br>
message: Optimizer learning rate : 0.000100<br>message: Number of total pixels : 7069860<br>message: Number of used pixels : 17672<br>Iter
050 001 1.157223 <br>message: Registration using UnivariateEntropyMultiImageMetric<br>message: Transform Type BSplineDeformableTransformOpt<br>message: Multiresolution level : 0<br>message: Number of total parameters : 7986<br>
message: Optimizertype : GradientDescentLineSearchOptimizer<br>message: Optimizer # of Iter. to go : 168<br>message: Optimizer learning rate : 625.000000<br>message: Number of total pixels : 109350<br>message: Number of used pixels : 8837<br>
ExceptionObject caught !<br><br>itk::ExceptionObject (0x2b4e48048890)<br>Location: "void itk::MultiThreader::SingleMethodExecute()" <br>File: /home/kaveh/bin/InsightToolkit-3.10.1/Code/Common/itkMultiThreader.cxx<br>
Line: 429<br>Description: itk::ERROR: MultiThreader(0xc2ba20): Exception occurred during
SingleMethodExecute<br>/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Source/UnivariateEntropyMultiImageMetric.txx:238:<br>itk::ERROR: UnivariateEntropyMultiImageMetric(0xc25e50): Too many samples mapped outside the moving buffer<br>
<br><br>----------------------------------------------------------<br>"RegistrationTest004" end time: Aug 16 15:33 EDT<br>"RegistrationTest004" time elapsed: 00:01:01<br>----------------------------------------------------------<br>
<br>12/72 Testing: WriteOutputsTest004<br>12/72 Test: WriteOutputsTest004<br>Command: "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/ComputeOutputs" "/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/filenames004.txt"
"/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/parameters004.txt" <br>Directory: /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing<br>
"WriteOutputsTest004" start time: Aug 16 15:33 EDT<br>Output:<br>----------------------------------------------------------<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/InputImage/Images/0.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/InputImage/Slices/0.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/InputImage/Images/1.mhd<br>
Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/InputImage/Slices/1.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/InputImage/MeanImages/Mean.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/InputImage/MeanImages/MeanSlice.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/InputImage/STDImages/STD.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/InputImage/STDImages/STDSlice.jpg<br>Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/Images/0.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/Slices/0.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/DeformationSlices/0.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/Images/1.mhd<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/Slices/1.jpg<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/DeformationSlices/1.jpg<br>
Writing
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/MeanImages/Mean.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/MeanImages/MeanSlice.jpg<br>
Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/STDImages/STD.mhd<br>Writing /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Affine/STDImages/STDSlice.jpg<br>
terminate called after throwing an instance of 'itk::ExceptionObject'<br> what(): /home/kaveh/bin/InsightToolkit-3.10.1/Code/IO/itkTransformFileReader.cxx:74:<br>itk::ERROR: TransformFileReader(0x2b667c004300): The file could not be opened for read access <br>
Filename:
"/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration004/Bspline_Grid_8/TransformFiles/0.txt"<br>----------------------------------------------------------<br>
"WriteOutputsTest004" end time: Aug 16 15:33 EDT<br>"WriteOutputsTest004" time elapsed: 00:00:33<br>----------------------------------------------------------<br><br>13/72 Testing: CreateRandImages005<br>
13/72 Test: CreateRandImages005<br>.....<br> <br><br><br><br><br></div></div><br>
</div><br>_____________________________________<br>
Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
<br>
Visit other Kitware open-source projects at<br>
<a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
<br>
Please keep messages on-topic and check the ITK FAQ at: <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
<br>
Follow this link to subscribe/unsubscribe:<br>
<a href="http://www.itk.org/mailman/listinfo/insight-users" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
<br></blockquote></div><br>