[Insight-users] Has anyone successfully compiled ITK3 from CVS with CableSWIG-ITK3, with wrapITK, with python, on OSX?

Dan White dan at chalkie.org.uk
Tue Dec 5 15:32:41 EST 2006


Dear all,

I'm trying to compile ITK3 from CVS with wrapITK on using python  
wrapping, with CableSwig-ITK-3.0.0

I'm using intel compilers on OSX intel (macbook pro) with flags -xP - 
fno-common -export

I used cmake 2.4.3 (configure fails with 2.4.5, Cannot find  
gcc_platform.cmake)

this is as far as i get:

[ 32%] Building CXX object Utilities/vxl/core/vnl/CMakeFiles/ 
itkvnl.dir/Templates/vnl_fortran_copy+double-.o
/Users/dan/Desktop/Insight/Utilities/vxl/core/vnl/Templates/ 
vnl_c_vector+double-.cxx(3): internal error: assertion failed at:  
"shared/edgcpfe/symbol_tbl.c", line 11663


compilation aborted for /Users/dan/Desktop/Insight/Utilities/vxl/core/ 
vnl/Templates/vnl_fortran_copy+double-.cxx (code 4)
make[2]: *** [Utilities/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/ 
vnl_fortran_copy+double-.o] Error 4
make[1]: *** [Utilities/vxl/core/vnl/CMakeFiles/itkvnl.dir/all] Error 2
make: *** [all] Error 2
daniel-whites-computer:~/Desktop/Insight dan$

anyone having any success on OSX, with gcc or intel compilers?

here is my CMakeCache.txt , well the external part ....

cheers

Dan (BioImageXD team)

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# For build in directory: /Users/dan/Desktop/Insight
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# If you do want to change a value, simply edit, save, and exit the  
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NIFTILIB_BINARY_DIR:STATIC=/Users/dan/Desktop/Insight/Utilities/nifti/ 
niftilib

//Value Computed by CMake
NIFTILIB_SOURCE_DIR:STATIC=/Users/dan/Desktop/Insight/Utilities/nifti/ 
niftilib

//Value Computed by CMake
NIFTI_BINARY_DIR:STATIC=/Users/dan/Desktop/Insight/Utilities/nifti

//Value Computed by CMake
NIFTI_SOURCE_DIR:STATIC=/Users/dan/Desktop/Insight/Utilities/nifti

//Value Computed by CMake
NumericsExamples_BINARY_DIR:STATIC=/Users/dan/Desktop/Insight/ 
Examples/Numerics

//Value Computed by CMake
NumericsExamples_SOURCE_DIR:STATIC=/Users/dan/Desktop/Insight/ 
Examples/Numerics

//Python Framework
PYTHON_DEBUG_LIBRARY:FILEPATH=-framework Python

//Path to a program.
PYTHON_EXECUTABLE:FILEPATH=/Library/Frameworks/Python.framework/ 
Versions/2.5/bin/python2.5

//Path to a file.
PYTHON_INCLUDE_PATH:PATH=/Library/Frameworks/Python.framework/ 
Versions/2.5/include/python2.5

//Python Framework
PYTHON_LIBRARY:FILEPATH=-framework Python

//Python site-packages directory to install a .pth file pointing
// at WrapITK Python modules.
PY_SITE_PACKAGES_PATH:PATH=/Library/Frameworks/Python.framework/ 
Versions/2.5/lib/python2.5/site-packages

//Value Computed by CMake
PathExamples_BINARY_DIR:STATIC=/Users/dan/Desktop/Insight/Examples/ 
DataRepresentation/Path

//Value Computed by CMake
PathExamples_SOURCE_DIR:STATIC=/Users/dan/Desktop/Insight/Examples/ 
DataRepresentation/Path

//Dependencies for the target
PixelMathJava_LIB_DEPENDS:STATIC=ITKCommon;SwigRuntimeJava;

//Dependencies for the target
PixelMathTcl_LIB_DEPENDS:STATIC=ITKCommon;SwigRuntimeTcl;/Library/ 
Frameworks/tcl.framework;

//Dependencies for the target
RegistrationJava_LIB_DEPENDS:STATIC=ITKCommon;ITKNumerics;SwigRuntimeJav 
a;

//Dependencies for the target
RegistrationTcl_LIB_DEPENDS:STATIC=ITKCommon;ITKNumerics;SwigRuntimeTcl; 
/Library/Frameworks/tcl.framework;

//Dependencies for the target
ResizeJava_LIB_DEPENDS:STATIC=ITKCommon;SwigRuntimeJava;

//Dependencies for the target
ResizeTcl_LIB_DEPENDS:STATIC=ITKCommon;SwigRuntimeTcl;/Library/ 
Frameworks/tcl.framework;

//Path to scp command, used by CTest for submitting results to
// a Dart server
SCPCOMMAND:FILEPATH=/usr/bin/scp

//Name of the computer/site where compile is being run
SITE:STRING=daniel-whites-computer.local

//Path to a program.
SVNCOMMAND:FILEPATH=/usr/local/bin/svn

//Value Computed by CMake
SWIG_BINARY_DIR:STATIC=/Users/dan/Desktop/Insight/Utilities/CableSwig/ 
SWIG

//Build some examples
SWIG_BUILD_EXAMPLES:BOOL=OFF

//Value Computed by CMake
SWIG_SOURCE_DIR:STATIC=/Users/dan/Desktop/Insight/Utilities/CableSwig/ 
SWIG

//Dependencies for the target
SegmentationAndThresholdJava_LIB_DEPENDS:STATIC=ITKCommon;ITKStatistics; 
ITKAlgorithms;SwigRuntimeJava;

//Dependencies for the target
SegmentationAndThresholdTcl_LIB_DEPENDS:STATIC=ITKCommon;ITKStatistics;I 
TKAlgorithms;SwigRuntimeTcl;/Library/Frameworks/tcl.framework;

//Dependencies for the target
SegmentationValidationJava_LIB_DEPENDS:STATIC=ITKCommon;SwigRuntimeJava;

//Dependencies for the target
SegmentationValidationTcl_LIB_DEPENDS:STATIC=ITKCommon;SwigRuntimeTcl;/L 
ibrary/Frameworks/tcl.framework;

//Dependencies for the target
SimpleFiltersJava_LIB_DEPENDS:STATIC=ITKCommon;ITKBasicFilters;SwigRunti 
meJava;

//Dependencies for the target
SimpleFiltersTcl_LIB_DEPENDS:STATIC=ITKCommon;ITKBasicFilters;SwigRuntim 
eTcl;/Library/Frameworks/tcl.framework;

//Value Computed by CMake
SpatialObjectsExamples_BINARY_DIR:STATIC=/Users/dan/Desktop/Insight/ 
Examples/SpatialObjects

//Value Computed by CMake
SpatialObjectsExamples_SOURCE_DIR:STATIC=/Users/dan/Desktop/Insight/ 
Examples/SpatialObjects

//Value Computed by CMake
StatisticsExamples_BINARY_DIR:STATIC=/Users/dan/Desktop/Insight/ 
Examples/Statistics

//Value Computed by CMake
StatisticsExamples_SOURCE_DIR:STATIC=/Users/dan/Desktop/Insight/ 
Examples/Statistics

//Dependencies for target
SwigRuntimeJava_LIB_DEPENDS:STATIC=

//Dependencies for the target
SwigRuntimePython_LIB_DEPENDS:STATIC=-framework Python;

//Dependencies for the target
SwigRuntimeTcl_LIB_DEPENDS:STATIC=/Library/Frameworks/tcl.framework;

//Path to a file.
TCL_INCLUDE_PATH:PATH=/Library/Frameworks/Tcl.framework/Headers

//Path to a library.
TCL_LIBRARY:FILEPATH=/Library/Frameworks/tcl.framework

//Path to a program.
TCL_TCLSH:FILEPATH=/usr/bin/tclsh

//Path to a file.
TK_INCLUDE_PATH:PATH=/Library/Frameworks/Tk.framework/Headers

//Path to a library.
TK_LIBRARY:FILEPATH=/Library/Frameworks/tk.framework

//Use double precision FFTW if found
USE_FFTWD:BOOL=OFF

//Use single precision FFTW if found
USE_FFTWF:BOOL=OFF

//Use the SGI SCSL High Performance Computing math library
USE_SCSL:BOOL=OFF

//Build external languages support
USE_WRAP_ITK:BOOL=ON

//Dependencies for the target
UnaryPixelMathJava_LIB_DEPENDS:STATIC=ITKCommon;SwigRuntimeJava;

//Dependencies for the target
UnaryPixelMathTcl_LIB_DEPENDS:STATIC=ITKCommon;SwigRuntimeTcl;/ 
Library/Frameworks/tcl.framework;

//Whether vnl_vector/vnl_matrix accessor methods check index bounds.
//
VNL_CONFIG_CHECK_BOUNDS:BOOL=ON

//Whether backward-compatibility methods are provided by vnl.
VNL_CONFIG_LEGACY_METHODS:BOOL=OFF

//Whether thread-safe vnl implementations are used.
VNL_CONFIG_THREAD_SAFE:BOOL=ON

//Path to a file.
VW_RAW_DATA_PATH:PATH=VW_RAW_DATA_PATH-NOTFOUND

//Dependencies for the target
VXLNumericsJava_LIB_DEPENDS:STATIC=itkvnl;itkvnl_inst;SwigRuntimeJava;

//Dependencies for the target
VXLNumericsTcl_LIB_DEPENDS:STATIC=itkvnl;itkvnl_inst;SwigRuntimeTcl;/ 
Library/Frameworks/tcl.framework;

//Re-run the configuration tests?
VXL_UPDATE_CONFIGURATION:BOOL=OFF

//Build BinaryMorphology module.
WRAP_BinaryMorphology:BOOL=ON