[Insight-users] Re: WrapITK binaries

Michael Bell michael.bell at acm.org
Mon Aug 14 16:31:33 EDT 2006


Gaetan,

I understand why you would load from an absolute path based on the jar
file; it is very convenient for the developer. However, the path has
to be set to point to the ITK libs already, correct? So loadLibrary
appears to be appropriate, and I think it will be the solution for my
purposes.

As always, I appreciate your uncommon responsiveness.

thanks,
michael


On 8/14/06, Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr> wrote:
>
> Hi Michael,
>
> You're right, java use absolute paths (and tcl do the same BTW). Only
> python is currently able to be installed anywhere without problem - that's
> what I have tested. I'm not sure what is the best way to handle that
> problem. In python, we are using the magic __file__ variable to find the
> path where WrapITK is installed. Perhaps there is the same kind of thing
> for tcl, but I would be surprised to have the same in java.
> Perhaps can we use standard environment variable to found the libs if they
> are not installed in the default places ? In Java for example, instead of
> loading the libs in a particular path, we could delegate the job of
> finding the path of the library to some standard methods, by using
> Runtime.loadLibrary() instead of Runtime.load(). That way, loadLibrary()
> will find the lib if they are in the LD_LIBRARY_PATH on linux, in the PATH
> on windows, in the DYLD_LIBRARY_PATH on mac os x, ...
> The user only have to take care to set correctly the PATH. Would it be ok
> for you ?
>
> Gaetan
>
>
> Le Mon, 14 Aug 2006 17:28:16 +0200, Michael Bell <michael.bell at acm.org> a
> écrit:
>
> > How does CPack handle directory load paths?
> >
> > For java wrapping, the dll SwigRuntimeJava is loaded from an absolute
> > path, the path to the build directory or install path. See
> > WrapITK/Java/itkbase.java.in.
> >
> > If I want to distribute this to other machines without compiling from
> > scratch, this means that I can't put SwigRuntimeJava in the classpath
> > and expect it to work. I can't even preload it because it always gets
> > loaded with InsightToolkit.jar.
> >
> > Does itkbase need to be changed for this to work, or does CPack take
> > care of the problem? (BTW, this causes problems on unix and windows)
> >
> > thanks,
> > michael
> >
> >
> > On 8/10/06, Gaetan Lehmann <gaetan.lehmann at jouy.inra.fr> wrote:
> >>
> >> Hi,
> >>
> >> I have added a basic CPack configuration to WrapITK.
> >> It work just fine with linux, but I would not be surprised to have some
> >> problems on other systems (like windows).
> >> Can you tests on your system(s) ?
> >>
> >> The only thing to do is to set INSTALL_WRAP_ITK_COMPATIBILITY to OFF
> >> with
> >> cmake, and to build the target "package". On my system:
> >>
> >> [glehmann at marvin build]$ make package
> >> Run CPack packaging tool...
> >> CPack: Install projects
> >> CPack: - Run preinstall target for: WrapITK
> >> CPack: - Install project: WrapITK
> >> CPack: Compress package
> >> CPack: Finalize package
> >> CPack: Package
> >> /home/glehmann/src/contrib-itk/WrapITK-unstable/build/WrapITK-0.2.1-Linux.sh
> >> generated.
> >>
> >> So easy :-)
> >>
> >> Gaetan
> >>
> >>
> >>
> >> On Wed, 09 Aug 2006 23:00:00 +0200, Charl P. Botha <cpbotha at gmail.com>
> >> wrote:
> >>
> >> > On 8/9/06, Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr> wrote:
> >> >> We have already talked about that some time ago with Charl.
> >> >> Charl, I think you have already deployed WrapITK on several host.
> >> Have
> >> >> you
> >> >> used a special method to do that ?
> >> >
> >> > For this application I use PyInstaller, but WrapITK was too complex
> >> > for it.  In the end I just made a script that collects all the
> >> > relevant ITK/WrapITK DLLs and Python files and puts them in the right
> >> > places, on Windows and Linux.  I ship this whole tree with my
> >> > application.  The script is now integrated in my Frankensteinian
> >> > build-system and it seems to work.
> >> >
> >> > You're welcome to have the bits that do the WrapITK 'packaging', of
> >> > course.  In principle, one should be able to take the generated tree
> >> > and plonk it down on a user's system.  After having set the
> >> > environment with a brilliant tool such as <plug>
> >> > cpbotha.net/Software/envedit </plug> you're good to go.
> >> >
> >> > See you,
> >> > Charl
> >>
> >>
> >>
> >> --
> >> Gaëtan Lehmann
> >> Biologie du Développement et de la Reproduction
> >> INRA de Jouy-en-Josas (France)
> >> tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
> >> http://voxel.jouy.inra.fr
> >>
> >
> >
>
>
>
> --
> Gaëtan Lehmann
> Biologie du Développement et de la Reproduction
> INRA de Jouy-en-Josas (France)
> tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
> http://voxel.jouy.inra.fr
>


-- 
michael.bell at acm.org


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