% Configuration file for ITK FEM registration example
4	% Number of levels in the multi-res pyramid
1	% Maximum Level to use in the pyramid 
 1 1  % scaling at lowest level of pyramid
 4 4 4 4		    % pixels per elt
 1.e1 1.e1 1.e1 1.e-1	    % Elasticity
 1.e-1 1.e-2 1.e-1 1.e-1	    % Rho
 1. 1.  1. 1		    % image energy scaling
 4 1 1 2		    % NumberOfIntegrationPoints
 5 5 5 5		    % WidthOfMetricRegion
 1 20 15 5		    % MaximumIterations
1  5.0  % 0 = mean square, 1 = ncc, 2= pattern intensity, 3=MI
1.0	% Alpha
1	% DescentDirection
1	% DoLineSearch
1.e0	% TimeStep
1.e-15  % Energy Reduction Factor
2     % dimension of images
128	% Nx (image x dimension)
128	% Ny (image y dimension)
128      % Nz (image z dimension - not used if 2D)
E:\\Avants\\MetaImages\\brain_slice1smth.im  %ReferenceFileName
E:\\Avants\\MetaImages\\brain_slice2smth.im % %TargetFileName
0       % UseLandmarks - read the file name below if this is true
E:\\tessa\\temp\\e15326s16i1_2.regLM        % LandmarkFileName
E:\\Avants\\result  % ResultsFileName
0       % WriteDisplacementField
E:\\tessa\\temp\\disp       % DisplacementsFileName
0  % WriteMeshFile
E:\Avants\slice-tri.fem     % MeshFileName

END

