ITK Release 4/Microscopy/Reference Applications

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Microscopy Reference Applications

Application Domains

  • Cellular tracking (across time)
  • Lineage reconstruction (cell tracking + cell division detection)
  • Neuron tracing
  • Gene expression mapping (3D+t)
  • High throughput processing: (thousands of images)
  • Image Annotation
  • Brain mapping (reverse engineering connections)(fly, mouse)
  • Image deconvolution

Software Applications

GoFigure

Farsight Tookit


V3D

V3D-Fly-Brain-Screenshot.png


Slicer