ITK/Examples/Iterators/NeighborhoodIterator

From KitwarePublic

Jump to: navigation, search
ITK Examples Baseline Iterators TestNeighborhoodIterator.png

This example demonstrates how to traverse an itkImage with access to a rectangular neighborhood around the center pixel of the iterator.

Contents

NeighborhoodIterator.cxx

#include "itkImage.h"
#include "itkImageFileReader.h"
#include "itkNeighborhoodIterator.h"
 
#include <itkImageToVTKImageFilter.h>
 
#include "vtkVersion.h"
#include "vtkImageViewer.h"
#include "vtkImageMapper3D.h"
#include "vtkRenderWindowInteractor.h"
#include "vtkSmartPointer.h"
#include "vtkImageActor.h"
#include "vtkInteractorStyleImage.h"
#include "vtkRenderer.h"
 
int main(int argc, char*argv[])
{
  if(argc < 2)
    {
    std::cerr << "Required: filename" << std::endl;
    return EXIT_FAILURE;
    }
 
  typedef itk::Image<unsigned char, 2>  ImageType;
 
  typedef itk::ImageFileReader<ImageType> ReaderType;
  ReaderType::Pointer reader = ReaderType::New();
  reader->SetFileName(argv[1]);
  reader->Update();
 
  ImageType::Pointer image = reader->GetOutput();
 
  ImageType::SizeType regionSize;
  regionSize[0] = 50;
  regionSize[1] = 1;
 
  ImageType::IndexType regionIndex;
  regionIndex[0] = 0;
  regionIndex[1] = 0;
 
  ImageType::RegionType region;
  region.SetSize(regionSize);
  region.SetIndex(regionIndex);
 
  ImageType::SizeType radius;
  radius[0] = 1;
  radius[1] = 1;
 
  itk::NeighborhoodIterator<ImageType> iterator(radius, image,region);
 
 
  while(!iterator.IsAtEnd())
    {
    // Set the current pixel to white
    iterator.SetCenterPixel(255);
 
    for(unsigned int i = 0; i < 9; i++)
      {
      ImageType::IndexType index = iterator.GetIndex(i);
      std::cout << index[0] << " " << index[1] << std::endl;
 
      bool IsInBounds;
      iterator.GetPixel(i, IsInBounds);
      if(IsInBounds)
        {
        iterator.SetPixel(i,255);
        }
      }
    ++iterator;
    }
 
  // Visualize
  typedef itk::ImageToVTKImageFilter<ImageType> ConnectorType;
  ConnectorType::Pointer connector = ConnectorType::New();
  connector->SetInput(image);
 
  vtkSmartPointer<vtkImageActor> actor =
    vtkSmartPointer<vtkImageActor>::New();
#if VTK_MAJOR_VERSION <= 5
  actor->SetInput(connector->GetOutput());
#else
  connector->Update();
  actor->GetMapper()->SetInputData(connector->GetOutput());
#endif
 
  vtkSmartPointer<vtkRenderWindow> renderWindow =
    vtkSmartPointer<vtkRenderWindow>::New();
 
  vtkSmartPointer<vtkRenderWindowInteractor> interactor =
    vtkSmartPointer<vtkRenderWindowInteractor>::New();
  interactor->SetRenderWindow(renderWindow);
 
  vtkSmartPointer<vtkRenderer> renderer =
    vtkSmartPointer<vtkRenderer>::New();
  renderWindow->AddRenderer(renderer);
 
  renderer->AddActor(actor);
  renderer->ResetCamera();
 
  renderWindow->Render();
 
  vtkSmartPointer<vtkInteractorStyleImage> style =
    vtkSmartPointer<vtkInteractorStyleImage>::New();
 
  interactor->SetInteractorStyle(style);
 
  interactor->Start();
 
  return EXIT_SUCCESS;
}

CMakeLists.txt

cmake_minimum_required(VERSION 2.8)
 
project(NeighborhoodIterator)
 
find_package(ItkVtkGlue REQUIRED)
include(${ItkVtkGlue_USE_FILE})
 
add_executable(NeighborhoodIterator NeighborhoodIterator.cxx)
target_link_libraries(NeighborhoodIterator
  ItkVtkGlue  ${VTK_LIBRARIES} ${ITK_LIBRARIES})

Building All of the Examples

Many of the examples in the ITK Wiki Examples Collection require VTK. You can build all of the the examples by following these instructions. If you are a new VTK user, you may want to try the Superbuild which will build a proper ITK and VTK.

ItkVtkGlue

If you download the entire ITK Wiki Examples Collection, the ItkVtkGlue directory will be included and configured. If you wish to just build a few examples, then you will need to download ItkVtkGlue and build it. When you run cmake it will ask you to specify the location of the ItkVtkGlue binary directory.

Personal tools