itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType > Class Template Reference
[Multithreaded Filters, Objects Related to Tensor Images]

#include <itkDiffusionTensor3DReconstructionImageFilter.h>

Inheritance diagram for itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >:

[legend]Collaboration diagram for itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >:

[legend]List of all members.

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Detailed Description

template<class TReferenceImagePixelType, class TGradientImagePixelType = TReferenceImagePixelType, class TTensorPixelType = double>
class itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >

This class takes as input one or more reference image (acquired in the absence of diffusion sensitizing gradients) and 'n' diffusion weighted images and their gradient directions and computes an image of tensors. (with DiffusionTensor3D as the pixel type). Once that is done, you can apply filters on this tensor image to compute FA, ADC, RGB weighted maps etc.

Inputs and Usage

There are two ways to use this class. When you have one reference image and n gradient images, you would use the class as

       filter->SetReferenceImage( image0 );
       filter->AddGradientImage( direction1, image1 );
       filter->AddGradientImage( direction2, image2 );
   ...

When you have the 'n' gradient and one or more reference images in a single multi-component image (VectorImage), you can specify the images simply as

       filter->SetGradientImage( directionsContainer, vectorImage );

Note that this method is used to specify both the reference and gradient images. This is convenient when the DWI images are read in using the NRRD format. Like the Nrrd format, the reference images are those components of the vectorImage whose gradient direction is (0,0,0). If more than one reference image is present, they are averaged prior to applying the Stejskal-Tanner equations.

Outputs

The output image is an image of Tensors:

       Image< DiffusionTensor3D< TTensorPixelType >, 3 >

Parameters

• Threshold - Threshold on the reference image data. The output tensor will be a null tensor for pixels in the reference image that have a value less than this.
• BValue - See the documentation of SetBValue().
• At least 6 gradient images must be specified for the filter to be able to run.

Template parameters

The class is templated over the pixel type of the reference and gradient images (expected to be scalar data types) and the internal representation of the DiffusionTensor3D pixel (double, float etc).

References:

• [1] C.F.Westin, S.E.Maier, H.Mamata, A.Nabavi, F.A.Jolesz, R.Kikinis, "Processing and visualization for Diffusion tensor MRI", Medical image Analysis, 2002, pp 93-108.
• [2] A Dual Tensor Basis Solution to the Stejskal-Tanner Equations for DT-MRI

WARNING:

Although this filter has been written to support multiple threads, please set the number of threads to 1.

         filter->SetNumberOfThreads(1);

This is due to buggy code in netlib/dsvdc, that is called by vnl_svd. (used to compute the psudo-inverse to find the dual tensor basis).

Author:

Thanks to Xiaodong Tao, GE, for contributing parts of this class. Also thanks to Casey Goodlet, UNC for patches to support multiple baseline images and other improvements.

Note:

This work is part of the National Alliance for Medical image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.

Examples and Datasets

See Examples/Filtering/DiffusionTensor3DReconstructionImageFilter.cxx Sample DTI datasets may be obtained from verbatim ftp://public.kitware.com/pub/namic/DTI/Data/dwi.nhdr ftp://public.kitware.com/pub/namic/DTI/Data/dwi.img.gz ( gunzip this ) verbatim

See also:

DiffusionTensor3D SymmetricSecondRankTensor

Definition at line 122 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Public Types
typedef vnl_matrix< double >	CoefficientMatrixType
typedef SmartPointer< const Self >	ConstPointer
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector< DataObjectPointer >	DataObjectPointerArray
typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType
typedef VectorContainer< unsigned int, GradientDirectionType >	GradientDirectionContainerType
typedef vnl_vector_fixed< double, 3 >	GradientDirectionType
typedef VectorImage< GradientPixelType, 3 >	GradientImagesType
typedef Image< GradientPixelType, 3 >	GradientImageType
typedef TGradientImagePixelType	GradientPixelType
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef TInputImage	InputImageType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef TensorImageType	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef Superclass::InputImageType	ReferenceImageType
typedef TReferenceImagePixelType	ReferencePixelType
typedef DiffusionTensor3DReconstructionImageFilter	Self
typedef ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >	Superclass
typedef vnl_matrix_fixed< double, 6, 6 >	TensorBasisMatrixType
typedef Image< TensorPixelType, 3 >	TensorImageType
typedef DiffusionTensor3D< TTensorPixelType >	TensorPixelType
Public Member Functions
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
void	AddGradientImage (const GradientDirectionType &, const GradientImageType *image)
virtual LightObject::Pointer	CreateAnother () const
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData ()
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
DataObjectPointerArray &	GetInputs ()
const MetaDataDictionary &	GetMetaDataDictionary (void) const
MetaDataDictionary &	GetMetaDataDictionary (void)
virtual unsigned long	GetMTime () const
MultiThreader *	GetMultiThreader ()
virtual const char *	GetNameOfClass () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
virtual const float &	GetProgress ()
virtual int	GetReferenceCount () const
virtual ReferenceImageType *	GetReferenceImage ()
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (DataObject *output)
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &) const
void	InvokeEvent (const EventObject &)
virtual DataObjectPointer	MakeOutput (unsigned int idx)
virtual void	Modified () const
virtual void	PrepareOutputs ()
void	Print (std::ostream &os, Indent indent=0) const
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
void	SetDebug (bool debugFlag) const
void	SetGradientImage (GradientDirectionContainerType *, const GradientImagesType *image)
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetProgress (float _arg)
virtual void	SetReferenceCount (int)
void	SetReferenceImage (ReferenceImageType *referenceImage)
virtual void	UnRegister () const
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
unsigned long	AddObserver (const EventObject &event, Command *) const
unsigned long	AddObserver (const EventObject &event, Command *)
virtual const TTensorPixelType &	GetBValue ()
virtual void	SetBValue (TTensorPixelType _arg)
virtual GradientDirectionType	GetGradientDirection (unsigned int idx) const
const InputImageType *	GetInput (unsigned int idx)
const InputImageType *	GetInput (void)
virtual void	SetInput (unsigned int, const TInputImage *image)
virtual void	SetInput (const InputImageType *image)
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
DataObjectPointerArray &	GetOutputs ()
virtual const int &	GetNumberOfThreads ()
virtual void	SetNumberOfThreads (int _arg)
OutputImageType *	GetOutput (unsigned int idx)
OutputImageType *	GetOutput (void)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOff ()
void	ReleaseDataFlagOn ()
virtual void	SetReleaseDataFlag (bool flag)
virtual ReferencePixelType	GetThreshold ()
virtual void	SetThreshold (ReferencePixelType _arg)
	itkStaticConstMacro (OutputImageDimension, unsigned int, TOutputImage::ImageDimension)
	itkStaticConstMacro (InputImageDimension, unsigned int, TInputImage::ImageDimension)
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
Static Public Member Functions
static void	BreakOnError ()
static Pointer	New ()
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static void	SetGlobalWarningDisplay (bool flag)
Protected Types
enum	GradientImageTypeEnumeration {   GradientIsInASingleImage = 1,   GradientIsInManyImages,   Else }
typedef ImageToImageFilterDetail::ImageRegionCopier< itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension)>	InputToOutputRegionCopierType
typedef ImageToImageFilterDetail::ImageRegionCopier< itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension)>	OutputToInputRegionCopierType
typedef int	InternalReferenceCountType
Protected Member Functions
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
void	BeforeThreadedGenerateData ()
virtual void	CacheInputReleaseDataFlags ()
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
void	ComputeTensorBasis ()
	DiffusionTensor3DReconstructionImageFilter ()
virtual void	GenerateData ()
virtual void	GenerateInputRequestedRegion ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RestoreInputReleaseDataFlags ()
void	SetNumberOfInputs (unsigned int num)
void	SetNumberOfOutputs (unsigned int num)
virtual int	SplitRequestedRegion (int i, int num, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, int threadId) ITK_NO_RETURN
void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, int)
	~DiffusionTensor3DReconstructionImageFilter ()
virtual void	AddInput (DataObject *input)
virtual const unsigned int &	GetNumberOfRequiredInputs ()
virtual void	RemoveInput (DataObject *input)
virtual void	SetNthInput (unsigned int num, DataObject *input)
virtual void	SetNumberOfRequiredInputs (unsigned int _arg)
virtual void	AddOutput (DataObject *output)
virtual const unsigned int &	GetNumberOfRequiredOutputs ()
virtual void	RemoveOutput (DataObject *output)
virtual void	SetNthOutput (unsigned int num, DataObject *output)
virtual void	SetNumberOfRequiredOutputs (unsigned int _arg)
const DataObject *	GetInput (unsigned int idx) const
const DataObject *	GetOutput (unsigned int idx) const
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
void	PushBackInput (const DataObject *input)
void	PushFrontInput (const DataObject *input)
Static Protected Member Functions
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
Protected Attributes
TimeStamp	m_OutputInformationMTime
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock
bool	m_Updating

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Member Typedef Documentation

template<class TReferenceImagePixelType, class TGradientImagePixelType = TReferenceImagePixelType, class TTensorPixelType = double>

typedef vnl_matrix< double > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >::CoefficientMatrixType

Definition at line 172 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<class TReferenceImagePixelType, class TGradientImagePixelType = TReferenceImagePixelType, class TTensorPixelType = double>

typedef SmartPointer<const Self> itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >::ConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 131 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<class TOutputImage>

typedef DataObject::Pointer itk::ImageSource< TOutputImage >::DataObjectPointer [inherited]

Smart Pointer type to a DataObject.

Reimplemented from itk::ProcessObject.

Reimplemented in itk::LabelStatisticsImageFilter< TInputImage, TLabelImage >, itk::MinimumMaximumImageFilter< TInputImage >, itk::StatisticsImageFilter< TInputImage >, and itk::StreamingImageFilter< TInputImage, TOutputImage >.

Definition at line 62 of file itkImageSource.h.

typedef std::vector<DataObjectPointer> itk::ProcessObject::DataObjectPointerArray [inherited]

STL Array of SmartPointers to DataObjects

Definition at line 103 of file itkProcessObject.h.

typedef DataObjectPointerArray::size_type itk::ProcessObject::DataObjectPointerArraySizeType [inherited]

Size type of an std::vector

Definition at line 112 of file itkProcessObject.h.

template<class TReferenceImagePixelType, class TGradientImagePixelType = TReferenceImagePixelType, class TTensorPixelType = double>

typedef VectorContainer< unsigned int, GradientDirectionType > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >::GradientDirectionContainerType

Container to hold gradient directions of the 'n' DW measurements

Definition at line 179 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<class TReferenceImagePixelType, class TGradientImagePixelType = TReferenceImagePixelType, class TTensorPixelType = double>

typedef vnl_vector_fixed< double, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >::GradientDirectionType

Holds each magnetic field gradient used to acquire one DWImage

Definition at line 175 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<class TReferenceImagePixelType, class TGradientImagePixelType = TReferenceImagePixelType, class TTensorPixelType = double>

typedef VectorImage< GradientPixelType, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >::GradientImagesType

An alternative typedef defining one (of the many) gradient images. It will be assumed that the vectorImage has the same dimension as the Reference image and a vector length parameter of n (number of gradient directions)

Definition at line 167 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<class TReferenceImagePixelType, class TGradientImagePixelType = TReferenceImagePixelType, class TTensorPixelType = double>

typedef Image< GradientPixelType, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >::GradientImageType

Typedef defining one (of the many) gradient images.

Definition at line 161 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<class TReferenceImagePixelType, class TGradientImagePixelType = TReferenceImagePixelType, class TTensorPixelType = double>

typedef TGradientImagePixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >::GradientPixelType

Definition at line 145 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef InputImageType::ConstPointer itk::ImageToImageFilter< TInputImage, TOutputImage >::InputImageConstPointer [inherited]

Reimplemented in itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >, itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >, itk::IsolatedWatershedImageFilter< TInputImage, TOutputImage >, itk::KLMRegionGrowImageFilter< TInputImage, TOutputImage >, itk::MRFImageFilter< TInputImage, TClassifiedImage >, itk::MultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::RecursiveMultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::RegionGrowImageFilter< TInputImage, TOutputImage >, itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >, itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage, TBinaryPriorImage >, itk::BinomialBlurImageFilter< TInputImage, TOutputImage >, itk::BlackTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::BloxBoundaryPointToCoreAtomImageFilter< dim >, itk::BloxBoundaryProfileImageToBloxCoreAtomImageFilter< TInputImage, TOutputImage, TSourceImage >, itk::BSplineDecompositionImageFilter< TInputImage, TOutputImage >, itk::CheckerBoardImageFilter< TImage >, itk::ClosingByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >, itk::FlipImageFilter< TImage >, itk::GradientImageToBloxBoundaryPointImageFilter< TInputImage >, itk::GrayscaleConnectedClosingImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedOpeningImageFilter< TInputImage, TOutputImage >, itk::GrayscaleFillholeImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGrindPeakImageFilter< TInputImage, TOutputImage >, itk::HConcaveImageFilter< TInputImage, TOutputImage >, itk::HConvexImageFilter< TInputImage, TOutputImage >, itk::HMaximaImageFilter< TInputImage, TOutputImage >, itk::HMinimaImageFilter< TInputImage, TOutputImage >, itk::HoughTransform2DCirclesImageFilter< TInputPixelType, TOutputPixelType >, itk::HoughTransform2DLinesImageFilter< TInputPixelType, TOutputPixelType >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::IsolatedConnectedImageFilter< TInputImage, TOutputImage >, itk::IterativeInverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::NonThreadedShrinkImageFilter< TInputImage, TOutputImage >, itk::OpeningByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::OrientImageFilter< TInputImage, TOutputImage >, itk::PolylineMask2DImageFilter< TInputImage, TPolyline, TOutputImage >, itk::RecursiveSeparableImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ShrinkImageFilter< TInputImage, TOutputImage >, itk::TobogganImageFilter< TInputImage >, itk::TwoOutputExampleImageFilter< TImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::WarpImageFilter< TInputImage, TOutputImage, TDeformationField >, itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >, itk::WhiteTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::WrapPadImageFilter< TInputImage, TOutputImage >, itk::InPlaceImageFilter< TInputImage, TOutputImage >, itk::SimpleFuzzyConnectednessImageFilterBase< TInputImage, TOutputImage >, itk::AnchorErodeDilateImageFilter< TImage, TKernel, TFunction1, TFunction2 >, itk::AnchorOpenCloseImageFilter< TImage, TKernel, LessThan, GreaterThan, LessEqual, GreaterEqual >, itk::ExponentialDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::MorphologicalWatershedFromMarkersImageFilter< TInputImage, TLabelImage >, itk::MorphologicalWatershedImageFilter< TInputImage, TOutputImage >, itk::BlackTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::WhiteTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::RegionalMaximaImageFilter< TInputImage, TOutputImage >, itk::RegionalMinimaImageFilter< TInputImage, TOutputImage >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, TFunction1, TFunction2 >, itk::VanHerkGilWermanErodeDilateImageFilter< TImage, TKernel, TFunction1 >, itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >, itk::InPlaceImageFilter< TDeformationField, TDeformationField >, itk::InPlaceImageFilter< TLabelImage, TOutputImage >, itk::InPlaceImageFilter< TInputImage >, itk::InPlaceImageFilter< TInputImage, TSparseOutputImage >, itk::InPlaceImageFilter< TFeatureImageType, Superclass::ImageType >, itk::InPlaceImageFilter< TInputImage1, TOutputImage >, itk::InPlaceImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::InPlaceImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::InPlaceImageFilter< itk::Image< TInputPixel1, NDimension >, itk::Image< std::complex< TOutputPixel >, NDimension > >, itk::InPlaceImageFilter< TInputImageType, TSparseOutputImageType >, itk::InPlaceImageFilter< TImage, TImage >, itk::AnchorErodeDilateImageFilter< TImage, TKernel, std::less< TImage::TImage::PixelType >, std::less_equal< TImage::TImage::PixelType > >, itk::AnchorErodeDilateImageFilter< TImage, TKernel, std::greater< TImage::TImage::PixelType >, std::greater_equal< TImage::TImage::PixelType > >, itk::AnchorOpenCloseImageFilter< TImage, TKernel, std::greater< TImage::PixelType >, std::less< TImage::PixelType >, std::greater_equal< TImage::PixelType >, std::less_equal< TImage::PixelType > >, itk::AnchorOpenCloseImageFilter< TImage, TKernel, std::less< TImage::PixelType >, std::greater< TImage::PixelType >, std::less_equal< TImage::PixelType >, std::greater_equal< TImage::PixelType > >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::greater< TInputImage::PixelType >, std::greater< TOutputImage::PixelType > >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::less< TInputImage::PixelType >, std::less< TOutputImage::PixelType > >, itk::VanHerkGilWermanErodeDilateImageFilter< TImage, TKernel, itk::MinFunctor< TImage::PixelType > >, and itk::VanHerkGilWermanErodeDilateImageFilter< TImage, TKernel, itk::MaxFunctor< TImage::PixelType > >.

Definition at line 84 of file itkImageToImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef InputImageType::PixelType itk::ImageToImageFilter< TInputImage, TOutputImage >::InputImagePixelType [inherited]

Reimplemented in itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >, itk::IsolatedWatershedImageFilter< TInputImage, TOutputImage >, itk::KLMRegionGrowImageFilter< TInputImage, TOutputImage >, itk::MRFImageFilter< TInputImage, TClassifiedImage >, itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >, itk::RegionGrowImageFilter< TInputImage, TOutputImage >, itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >, itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >, itk::AccumulateImageFilter< TInputImage, TOutputImage >, itk::BlackTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::BloxBoundaryProfileImageToBloxCoreAtomImageFilter< TInputImage, TOutputImage, TSourceImage >, itk::CannyEdgeDetectionImageFilter< TInputImage, TOutputImage >, itk::ChangeInformationImageFilter< TInputImage >, itk::ClosingByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::ConfidenceConnectedImageFilter< TInputImage, TOutputImage >, itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >, itk::ConstantPadImageFilter< TInputImage, TOutputImage >, itk::CropImageFilter< TInputImage, TOutputImage >, itk::ExtractImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedClosingImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedOpeningImageFilter< TInputImage, TOutputImage >, itk::GrayscaleFillholeImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGrindPeakImageFilter< TInputImage, TOutputImage >, itk::HConcaveImageFilter< TInputImage, TOutputImage >, itk::HConvexImageFilter< TInputImage, TOutputImage >, itk::HMaximaImageFilter< TInputImage, TOutputImage >, itk::HMinimaImageFilter< TInputImage, TOutputImage >, itk::IsolatedConnectedImageFilter< TInputImage, TOutputImage >, itk::MirrorPadImageFilter< TInputImage, TOutputImage >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, TFunction >, itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >, itk::OpeningByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::OrientImageFilter< TInputImage, TOutputImage >, itk::PadImageFilter< TInputImage, TOutputImage >, itk::PasteImageFilter< TInputImage, TSourceImage, TOutputImage >, itk::PolylineMask2DImageFilter< TInputImage, TPolyline, TOutputImage >, itk::PolylineMaskImageFilter< TInputImage, TPolyline, TVector, TOutputImage >, itk::ProjectionImageFilter< TInputImage, TOutputImage, TAccumulator >, itk::ReconstructionImageFilter< TInputImage, TOutputImage, TCompare >, itk::ReflectImageFilter< TInputImage, TOutputImage >, itk::RegionOfInterestImageFilter< TInputImage, TOutputImage >, itk::ShiftScaleImageFilter< TInputImage, TOutputImage >, itk::ShiftScaleInPlaceImageFilter< TInputImage >, itk::StreamingImageFilter< TInputImage, TOutputImage >, itk::ThresholdImageFilter< TImage >, itk::TobogganImageFilter< TInputImage >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, TFunction >, itk::VectorConfidenceConnectedImageFilter< TInputImage, TOutputImage >, itk::WhiteTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::WrapPadImageFilter< TInputImage, TOutputImage >, itk::ZeroCrossingBasedEdgeDetectionImageFilter< TInputImage, TOutputImage >, itk::ZeroCrossingImageFilter< TInputImage, TOutputImage >, itk::ImageAndPathToImageFilter< TInputImage, TInputPath, TOutputImage >, itk::InPlaceImageFilter< TInputImage, TOutputImage >, itk::AnchorErodeDilateImageFilter< TImage, TKernel, TFunction1, TFunction2 >, itk::AnchorOpenCloseImageFilter< TImage, TKernel, LessThan, GreaterThan, LessEqual, GreaterEqual >, itk::MorphologicalWatershedFromMarkersImageFilter< TInputImage, TLabelImage >, itk::MorphologicalWatershedImageFilter< TInputImage, TOutputImage >, itk::BlackTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::WhiteTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::RegionalMaximaImageFilter< TInputImage, TOutputImage >, itk::RegionalMinimaImageFilter< TInputImage, TOutputImage >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, TFunction1, TFunction2 >, itk::ValuedRegionalMaximaImageFilter< TInputImage, TOutputImage >, itk::ValuedRegionalMinimaImageFilter< TInputImage, TOutputImage >, itk::VanHerkGilWermanErodeDilateImageFilter< TImage, TKernel, TFunction1 >, itk::CannyEdgeDetectionImageFilter< Superclass::ImageType, Superclass::ImageType >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Add1< TInputImage::PixelType, TInputImage::PixelType > >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Maximum1< TInputImage::PixelType, TInputImage::PixelType > >, itk::NaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ComposeRGBA< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MedianAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MaximumAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::BinaryThresholdAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MinimumAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MeanAccumulator< TInputImage::PixelType, TAccumulate > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::StandardDeviationAccumulator< TInputImage::PixelType, TAccumulate > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::SumAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::BinaryAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ReconstructionImageFilter< TInputImage, TOutputImage, std::greater< TOutputImage::PixelType > >, itk::ReconstructionImageFilter< TInputImage, TOutputImage, std::less< TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::DivideByConstant< TInputImage::PixelType, TConstant, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sqrt< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::SymmetricEigenAnalysisFunction< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Square< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sigmoid< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sin< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::BinaryThreshold< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Cos< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::IntensityLinearTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ThresholdLabeler< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::MatrixIndexSelection< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ModulusTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::GradientMagnitude< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ChangeLabel< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::BoundedReciprocal< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ExpNegative< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::RGBToLuminance< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::SubtractConstantFrom< TInputImage::PixelType, TConstant, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Acos< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Log10< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToImaginary< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::IntensityWindowingTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorCast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToPhase< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::EdgePotential< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::AddConstantTo< TInputImage::PixelType, TConstant, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::AccessorFunctor< TInputImage::PixelType, TAccessor > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Atan< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorIndexSelectionCast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToReal< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Tan< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Abs< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Log< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Asin< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::TensorFractionalAnisotropyFunction< TInputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToModulus< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TFeatureImageType, Superclass::ImageType, itk::Functor::Cast< TFeatureImageType::PixelType, Superclass::ImageType::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Exp< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::NOT< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::MultiplyByConstant< TInputImage::PixelType, TConstant, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TLabelImage, TOutputImage, itk::Functor::LabelToRGBFunctor< TLabelImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorMagnitudeLinearTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::TensorRelativeAnisotropyFunction< TInputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Cast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::InvertIntensityTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ImageAndPathToImageFilter< TImage, itk::ParametricPath< 2 >, TImage >, itk::InPlaceImageFilter< TDeformationField, TDeformationField >, itk::InPlaceImageFilter< TLabelImage, TOutputImage >, itk::InPlaceImageFilter< TInputImage >, itk::InPlaceImageFilter< TInputImage, TSparseOutputImage >, itk::InPlaceImageFilter< TFeatureImageType, Superclass::ImageType >, itk::InPlaceImageFilter< TInputImage1, TOutputImage >, itk::InPlaceImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::InPlaceImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::InPlaceImageFilter< itk::Image< TInputPixel1, NDimension >, itk::Image< std::complex< TOutputPixel >, NDimension > >, itk::InPlaceImageFilter< TInputImageType, TSparseOutputImageType >, itk::InPlaceImageFilter< TImage, TImage >, itk::AnchorErodeDilateImageFilter< TImage, TKernel, std::less< TImage::TImage::PixelType >, std::less_equal< TImage::TImage::PixelType > >, itk::AnchorErodeDilateImageFilter< TImage, TKernel, std::greater< TImage::TImage::PixelType >, std::greater_equal< TImage::TImage::PixelType > >, itk::AnchorOpenCloseImageFilter< TImage, TKernel, std::greater< TImage::PixelType >, std::less< TImage::PixelType >, std::greater_equal< TImage::PixelType >, std::less_equal< TImage::PixelType > >, itk::AnchorOpenCloseImageFilter< TImage, TKernel, std::less< TImage::PixelType >, std::greater< TImage::PixelType >, std::less_equal< TImage::PixelType >, std::greater_equal< TImage::PixelType > >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::greater< TInputImage::PixelType >, std::greater< TOutputImage::PixelType > >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::less< TInputImage::PixelType >, std::less< TOutputImage::PixelType > >, itk::VanHerkGilWermanErodeDilateImageFilter< TImage, TKernel, itk::MinFunctor< TImage::PixelType > >, and itk::VanHerkGilWermanErodeDilateImageFilter< TImage, TKernel, itk::MaxFunctor< TImage::PixelType > >.

Definition at line 86 of file itkImageToImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef InputImageType::Pointer itk::ImageToImageFilter< TInputImage, TOutputImage >::InputImagePointer [inherited]

Reimplemented in itk::BayesianClassifierImageFilter< TInputVectorImage, TLabelsType, TPosteriorsPrecisionType, TPriorsPrecisionType >, itk::BinaryPruningImageFilter< TInputImage, TOutputImage >, itk::BinaryThinningImageFilter< TInputImage, TOutputImage >, itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >, itk::FastChamferDistanceImageFilter< TInputImage, TOutputImage >, itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >, itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >, itk::ImageShapeModelEstimatorBase< TInputImage, TOutputImage >, itk::IsolatedWatershedImageFilter< TInputImage, TOutputImage >, itk::KLMRegionGrowImageFilter< TInputImage, TOutputImage >, itk::LabelVotingImageFilter< TInputImage, TOutputImage >, itk::MRFImageFilter< TInputImage, TClassifiedImage >, itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >, itk::MultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::OtsuMultipleThresholdsImageFilter< TInputImage, TOutputImage >, itk::OtsuThresholdImageFilter< TInputImage, TOutputImage >, itk::RecursiveMultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::RegionGrowImageFilter< TInputImage, TOutputImage >, itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >, itk::STAPLEImageFilter< TInputImage, TOutputImage >, itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >, itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage, TBinaryPriorImage >, itk::VoronoiSegmentationRGBImageFilter< TInputImage, TOutputImage >, itk::AccumulateImageFilter< TInputImage, TOutputImage >, itk::ApproximateSignedDistanceMapImageFilter< TInputImage, TOutputImage >, itk::BinomialBlurImageFilter< TInputImage, TOutputImage >, itk::BlackTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::BloxBoundaryPointToCoreAtomImageFilter< dim >, itk::BloxBoundaryProfileImageToBloxCoreAtomImageFilter< TInputImage, TOutputImage, TSourceImage >, itk::BSplineDecompositionImageFilter< TInputImage, TOutputImage >, itk::ChangeInformationImageFilter< TInputImage >, itk::ClosingByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::ConfidenceConnectedImageFilter< TInputImage, TOutputImage >, itk::ConnectedComponentFunctorImageFilter< TInputImage, TOutputImage, TFunctor, TMaskImage >, itk::ConnectedComponentImageFilter< TInputImage, TOutputImage, TMaskImage >,