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itkShapeLabelObject.h

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00001 /*=========================================================================
00002 
00003   Program:   Insight Segmentation & Registration Toolkit
00004   Module:    $RCSfile: itkShapeLabelObject.h,v $
00005   Language:  C++
00006   Date:      $Date: 2009-12-18 19:14:48 $
00007   Version:   $Revision: 1.6 $
00008 
00009   Copyright (c) Insight Software Consortium. All rights reserved.
00010   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
00011 
00012      This software is distributed WITHOUT ANY WARRANTY; without even 
00013      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
00014      PURPOSE.  See the above copyright notices for more information.
00015 
00016 =========================================================================*/
00017 #ifndef __itkShapeLabelObject_h
00018 #define __itkShapeLabelObject_h
00019 
00020 #include "itkLabelObject.h"
00021 #include "itkLabelMap.h"
00022 #include "itkAffineTransform.h"
00023 #include "itkMatrix.h"
00024 
00025 namespace itk
00026 {
00027 
00041 template < class TLabel, unsigned int VImageDimension >
00042 class ITK_EXPORT ShapeLabelObject : public LabelObject< TLabel, VImageDimension >
00043 {
00044 public:
00046   typedef ShapeLabelObject                       Self;
00047   typedef LabelObject< TLabel, VImageDimension > Superclass;
00048   typedef typename Superclass::LabelObjectType   LabelObjectType;
00049   typedef SmartPointer<Self>                     Pointer;
00050   typedef SmartPointer<const Self>               ConstPointer;
00051   typedef WeakPointer<const Self>                ConstWeakPointer;
00052 
00054   itkNewMacro(Self);
00055 
00057   itkTypeMacro(ShapeLabelObject, LabelObject);
00058 
00059   typedef LabelMap< Self > LabelMapType;
00060 
00061   itkStaticConstMacro(ImageDimension, unsigned int, VImageDimension);
00062 
00063   typedef typename Superclass::IndexType IndexType;
00064 
00065   typedef TLabel LabelType;
00066 
00067   typedef typename Superclass::LineType LineType;
00068 
00069   typedef typename Superclass::LengthType LengthType;
00070 
00071   typedef typename Superclass::LineContainerType LineContainerType;
00072 
00073   typedef typename Superclass::AttributeType AttributeType;
00074   itkStaticConstMacro(SIZE, AttributeType, 100);
00075   itkStaticConstMacro(PHYSICAL_SIZE, AttributeType, 101);
00076   itkStaticConstMacro(REGION_ELONGATION, AttributeType, 102);
00077   itkStaticConstMacro(SIZE_REGION_RATIO, AttributeType, 103);
00078   itkStaticConstMacro(CENTROID, AttributeType, 104);
00079   itkStaticConstMacro(REGION, AttributeType, 105);
00080   itkStaticConstMacro(SIZE_ON_BORDER, AttributeType, 106);
00081   itkStaticConstMacro(PHYSICAL_SIZE_ON_BORDER, AttributeType, 107);
00082   itkStaticConstMacro(FERET_DIAMETER, AttributeType, 108);
00083   itkStaticConstMacro(BINARY_PRINCIPAL_MOMENTS, AttributeType, 109);
00084   itkStaticConstMacro(BINARY_PRINCIPAL_AXES, AttributeType, 110);
00085   itkStaticConstMacro(BINARY_ELONGATION, AttributeType, 111);
00086   itkStaticConstMacro(PERIMETER, AttributeType, 112);
00087   itkStaticConstMacro(ROUNDNESS, AttributeType, 113);
00088   itkStaticConstMacro(EQUIVALENT_RADIUS, AttributeType, 114);
00089   itkStaticConstMacro(EQUIVALENT_PERIMETER, AttributeType, 115);
00090   itkStaticConstMacro(EQUIVALENT_ELLIPSOID_RADIUS, AttributeType, 116);
00091   itkStaticConstMacro(BINARY_FLATNESS, AttributeType, 117);
00092 
00093   static AttributeType GetAttributeFromName( const std::string & s )
00094     {
00095     if( s == "Size" )
00096       {
00097       return SIZE;
00098       }
00099     else if( s == "PhysicalSize" )
00100       {
00101       return PHYSICAL_SIZE;
00102       }
00103     else if( s == "RegionElongation" )
00104       {
00105       return REGION_ELONGATION;
00106       }
00107     else if( s == "SizeRegionRatio" )
00108       {
00109       return SIZE_REGION_RATIO;
00110       }
00111     else if( s == "Centroid" )
00112       {
00113       return CENTROID;
00114       }
00115     else if( s == "Region" )
00116       {
00117       return REGION;
00118       }
00119     else if( s == "SizeOnBorder" )
00120       {
00121       return SIZE_ON_BORDER;
00122       }
00123     else if( s == "PhysicalSizeOnBorder" )
00124       {
00125       return PHYSICAL_SIZE_ON_BORDER;
00126       }
00127     else if( s == "FeretDiameter" )
00128       {
00129       return FERET_DIAMETER;
00130       }
00131     else if( s == "BinaryPrincipalMoments" )
00132       {
00133       return BINARY_PRINCIPAL_MOMENTS;
00134       }
00135     else if( s == "BinaryPrincipalAxes" )
00136       {
00137       return BINARY_PRINCIPAL_AXES;
00138       }
00139     else if( s == "BinaryElongation" )
00140       {
00141       return BINARY_ELONGATION;
00142       }
00143     else if( s == "Perimeter" )
00144       {
00145       return PERIMETER;
00146       }
00147     else if( s == "Roundness" )
00148       {
00149       return ROUNDNESS;
00150       }
00151     else if( s == "EquivalentRadius" )
00152       {
00153       return EQUIVALENT_RADIUS;
00154       }
00155     else if( s == "EquivalentPerimeter" )
00156       {
00157       return EQUIVALENT_PERIMETER;
00158       }
00159     else if( s == "EquivalentEllipsoidSize" )
00160       {
00161       return EQUIVALENT_ELLIPSOID_RADIUS;
00162       }
00163     else if( s == "BinaryFlatness" )
00164       {
00165       return BINARY_FLATNESS;
00166       }
00167     // can't recognize the name
00168     return Superclass::GetAttributeFromName( s );
00169     }
00170 
00171   static std::string GetNameFromAttribute( const AttributeType & a )
00172     {
00173     switch( a )
00174       {
00175       case SIZE:
00176         return "Size";
00177         break;
00178       case PHYSICAL_SIZE:
00179         return "PhysicalSize";
00180         break;
00181       case REGION_ELONGATION:
00182         return "RegionElongation";
00183         break;
00184       case SIZE_REGION_RATIO:
00185         return "SizeRegionRatio";
00186         break;
00187       case CENTROID:
00188         return "Centroid";
00189       case REGION:
00190         return "Region";
00191         break;
00192       case SIZE_ON_BORDER:
00193         return "SizeOnBorder";
00194         break;
00195       case PHYSICAL_SIZE_ON_BORDER:
00196         return "PhysicalSizeOnBorder";
00197         break;
00198       case FERET_DIAMETER:
00199         return "FeretDiameter";
00200         break;
00201       case BINARY_PRINCIPAL_MOMENTS:
00202         return "BinaryPrincipalMoments";
00203         break;
00204       case BINARY_PRINCIPAL_AXES:
00205         return "BinaryPrincipalAxes";
00206         break;
00207       case BINARY_ELONGATION:
00208         return "BinaryElongation";
00209         break;
00210       case PERIMETER:
00211         return "Perimeter";
00212         break;
00213       case ROUNDNESS:
00214         return "Roundness";
00215         break;
00216       case EQUIVALENT_RADIUS:
00217         return "EquivalentRadius";
00218         break;
00219       case EQUIVALENT_PERIMETER:
00220         return "EquivalentPerimeter";
00221         break;
00222       case EQUIVALENT_ELLIPSOID_RADIUS:
00223         return "EquivalentEllipsoidSize";
00224         break;
00225       case BINARY_FLATNESS:
00226         return "BinaryFlatness";
00227         break;
00228       }
00229     // can't recognize the name
00230     return Superclass::GetNameFromAttribute( a );
00231     }
00232 
00233   typedef ImageRegion< VImageDimension > RegionType;
00234 
00235   typedef Point<double, VImageDimension> CentroidType;
00236 
00237   typedef Matrix< double, VImageDimension, VImageDimension >   MatrixType;
00238 
00239   typedef Vector< double, VImageDimension > VectorType;
00240 
00241   const RegionType & GetRegion() const
00242     {
00243     return m_Region;
00244     }
00245 
00246   void SetRegion( const RegionType & v )
00247     {
00248     m_Region = v;
00249     }
00250 
00251   const double & GetPhysicalSize() const
00252     {
00253     return m_PhysicalSize;
00254     }
00255 
00256   void SetPhysicalSize( const double & v )
00257     {
00258     m_PhysicalSize = v;
00259     }
00260 
00261   const unsigned long & GetSize() const
00262     {
00263     return m_Size;
00264     }
00265 
00266   void SetSize( const unsigned long & v )
00267     {
00268     m_Size = v;
00269     }
00270 
00271   const CentroidType & GetCentroid() const
00272     {
00273     return m_Centroid;
00274     }
00275 
00276   void SetCentroid( const CentroidType & centroid )
00277     {
00278     m_Centroid = centroid;
00279     }
00280 
00281   const double & GetRegionElongation() const
00282     {
00283     return m_RegionElongation;
00284     }
00285 
00286   void SetRegionElongation( const double & v )
00287     {
00288     m_RegionElongation = v;
00289     }
00290 
00291   const double & GetSizeRegionRatio() const
00292     {
00293     return m_SizeRegionRatio;
00294     }
00295 
00296   void SetSizeRegionRatio( const double & v )
00297     {
00298     m_SizeRegionRatio = v;
00299     }
00300 
00301   const unsigned long & GetSizeOnBorder() const
00302     {
00303     return m_SizeOnBorder;
00304     }
00305 
00306   void SetSizeOnBorder( const unsigned long & v )
00307     {
00308     m_SizeOnBorder = v;
00309     }
00310 
00311   const double & GetPhysicalSizeOnBorder() const
00312     {
00313     return m_PhysicalSizeOnBorder;
00314     }
00315 
00316   void SetPhysicalSizeOnBorder( const double & v )
00317     {
00318     m_PhysicalSizeOnBorder = v;
00319     }
00320 
00321   const double & GetFeretDiameter() const
00322     {
00323     return m_FeretDiameter;
00324     }
00325 
00326   void SetFeretDiameter( const double & v )
00327     {
00328     m_FeretDiameter = v;
00329     }
00330 
00331   const VectorType & GetBinaryPrincipalMoments() const
00332     {
00333     return m_BinaryPrincipalMoments;
00334     }
00335 
00336   void SetBinaryPrincipalMoments( const VectorType & v )
00337     {
00338     m_BinaryPrincipalMoments = v;
00339     }
00340 
00341   const MatrixType & GetBinaryPrincipalAxes() const
00342     {
00343     return m_BinaryPrincipalAxes;
00344     }
00345 
00346   void SetBinaryPrincipalAxes( const MatrixType & v )
00347     {
00348     m_BinaryPrincipalAxes = v;
00349     }
00350 
00351   const double & GetBinaryElongation() const
00352     {
00353     return m_BinaryElongation;
00354     }
00355 
00356   void SetBinaryElongation( const double & v )
00357     {
00358     m_BinaryElongation = v;
00359     }
00360 
00361   const double & GetPerimeter() const
00362     {
00363     return m_Perimeter;
00364     }
00365 
00366   void SetPerimeter( const double & v )
00367     {
00368     m_Perimeter = v;
00369     }
00370 
00371   const double & GetRoundness() const
00372     {
00373     return m_Roundness;
00374     }
00375 
00376   void SetRoundness( const double & v )
00377     {
00378     m_Roundness = v;
00379     }
00380 
00381   const double & GetEquivalentRadius() const
00382     {
00383     return m_EquivalentRadius;
00384     }
00385 
00386   void SetEquivalentRadius( const double & v )
00387     {
00388     m_EquivalentRadius = v;
00389     }
00390 
00391   const double & GetEquivalentPerimeter() const
00392     {
00393     return m_EquivalentPerimeter;
00394     }
00395 
00396   void SetEquivalentPerimeter( const double & v )
00397     {
00398     m_EquivalentPerimeter = v;
00399     }
00400 
00401   const VectorType & GetEquivalentEllipsoidSize() const
00402     {
00403     return m_EquivalentEllipsoidSize;
00404     }
00405 
00406   void SetEquivalentEllipsoidSize( const VectorType & v )
00407     {
00408     m_EquivalentEllipsoidSize = v;
00409     }
00410 
00411   const double & GetBinaryFlatness() const
00412     {
00413     return m_BinaryFlatness;
00414     }
00415 
00416   void SetBinaryFlatness( const double & v )
00417     {
00418     m_BinaryFlatness = v;
00419     }
00420 
00421 
00422   // some helper methods - not really required, but really useful!
00423 
00425   typedef AffineTransform<double,VImageDimension>   AffineTransformType;
00426   typedef typename AffineTransformType::Pointer     AffineTransformPointer;
00427 
00431   AffineTransformPointer GetBinaryPrincipalAxesToPhysicalAxesTransform() const
00432     {
00433     typename AffineTransformType::MatrixType matrix;
00434     typename AffineTransformType::OffsetType offset;
00435     for (unsigned int i = 0; i < VImageDimension; i++) 
00436       {
00437       offset[i]  = m_Centroid[i];
00438       for (unsigned int j = 0; j < VImageDimension; j++)
00439         {
00440         matrix[j][i] = m_BinaryPrincipalAxes[i][j];    // Note the transposition
00441         }
00442       }
00444 
00445     AffineTransformPointer result = AffineTransformType::New();
00446       
00447     result->SetMatrix(matrix);
00448     result->SetOffset(offset);
00449   
00450     return result;
00451     }
00452 
00457   AffineTransformPointer GetPhysicalAxesToBinaryPrincipalAxesTransform(void) const
00458     {
00459     typename AffineTransformType::MatrixType matrix;
00460     typename AffineTransformType::OffsetType offset;
00461     for (unsigned int i = 0; i < VImageDimension; i++) 
00462       {
00463       offset[i]    = m_Centroid[i];
00464       for (unsigned int j = 0; j < VImageDimension; j++)
00465         {
00466         matrix[j][i] = m_BinaryPrincipalAxes[i][j];    // Note the transposition
00467         }
00468       }
00470 
00471     AffineTransformPointer result = AffineTransformType::New();
00472     result->SetMatrix(matrix);
00473     result->SetOffset(offset);
00474   
00475     AffineTransformPointer inverse = AffineTransformType::New();
00476     result->GetInverse(inverse);
00477   
00478     return inverse;
00479     }
00480 
00481 
00482   virtual void CopyAttributesFrom( const LabelObjectType * lo )
00483     {
00484     Superclass::CopyAttributesFrom( lo );
00485 
00486     // copy the data of the current type if possible
00487     const Self * src = dynamic_cast<const Self *>( lo );
00488     if( src == NULL )
00489       {
00490       return;
00491       }
00492     m_Region = src->m_Region;
00493     m_Size = src->m_Size;
00494     m_PhysicalSize = src->m_PhysicalSize;
00495     m_Centroid = src->m_Centroid;
00496     m_RegionElongation = src->m_RegionElongation;
00497     m_SizeRegionRatio = src->m_SizeRegionRatio;
00498     m_SizeOnBorder = src->m_SizeOnBorder;
00499     m_PhysicalSizeOnBorder = src->m_PhysicalSizeOnBorder;
00500     m_FeretDiameter = src->m_FeretDiameter;
00501     m_BinaryPrincipalMoments = src->m_BinaryPrincipalMoments;
00502     m_BinaryPrincipalAxes = src->m_BinaryPrincipalAxes;
00503     m_BinaryElongation = src->m_BinaryElongation;
00504     m_Perimeter = src->m_Perimeter;
00505     m_Roundness = src->m_Roundness;
00506     m_EquivalentRadius = src->m_EquivalentRadius;
00507     m_EquivalentPerimeter = src->m_EquivalentPerimeter;
00508     m_EquivalentEllipsoidSize = src->m_EquivalentEllipsoidSize;
00509     m_BinaryFlatness = src->m_BinaryFlatness;
00510     }
00511 
00512 protected:
00513   ShapeLabelObject()
00514     {
00515     m_Size = 0;
00516     m_PhysicalSize = 0;
00517     m_Centroid.Fill(0);
00518     m_RegionElongation = 0;
00519     m_SizeRegionRatio = 0;
00520     m_SizeOnBorder = false;
00521     m_PhysicalSizeOnBorder = 0;
00522     m_FeretDiameter = false;
00523     m_BinaryPrincipalMoments.Fill(0);
00524     m_BinaryPrincipalAxes.Fill(0);
00525     m_BinaryElongation = 0;
00526     m_Perimeter = 0;
00527     m_Roundness = 0;
00528     m_EquivalentRadius = 0;
00529     m_EquivalentPerimeter = 0;
00530     m_EquivalentEllipsoidSize.Fill(0);
00531     m_BinaryFlatness = 0;
00532     }
00533 
00534   void PrintSelf(std::ostream& os, Indent indent) const
00535     {
00536     Superclass::PrintSelf( os, indent );
00537 
00538     os << indent << "Centroid: " << m_Centroid << std::endl;
00539     os << indent << "Region: ";
00540     m_Region.Print( os, indent );
00541     os << indent << "PhysicalSize: " << m_PhysicalSize << std::endl;
00542     os << indent << "Size: " << m_Size << std::endl;
00543     os << indent << "RegionElongation: " << m_RegionElongation << std::endl;
00544     os << indent << "SizeRegionRatio: " << m_SizeRegionRatio << std::endl;
00545     os << indent << "SizeOnBorder: " << m_SizeOnBorder << std::endl;
00546     os << indent << "PhysicalSizeOnBorder: " << m_PhysicalSizeOnBorder << std::endl;
00547     os << indent << "FeretDiameter: " << m_FeretDiameter << std::endl;
00548     os << indent << "BinaryPrincipalMoments: " << m_BinaryPrincipalMoments << std::endl;
00549     os << indent << "BinaryPrincipalAxes: " << std::endl << m_BinaryPrincipalAxes;
00550     os << indent << "BinaryElongation: " << m_BinaryElongation << std::endl;
00551     os << indent << "BinaryFlatness: " << m_BinaryFlatness << std::endl;
00552     os << indent << "Perimeter: " << m_Perimeter << std::endl;
00553     os << indent << "Roundness: " << m_Roundness << std::endl;
00554     os << indent << "EquivalentRadius: " << m_EquivalentRadius << std::endl;
00555     os << indent << "EquivalentPerimeter: " << m_EquivalentPerimeter << std::endl;
00556     os << indent << "EquivalentEllipsoidSize: " << m_EquivalentEllipsoidSize << std::endl;
00557     }
00558 
00559 private:
00560   ShapeLabelObject(const Self&); //purposely not implemented
00561   void operator=(const Self&); //purposely not implemented
00562 
00563   RegionType    m_Region;
00564   unsigned long m_Size;
00565   double        m_PhysicalSize;
00566   CentroidType  m_Centroid;
00567   double        m_RegionElongation;
00568   double        m_SizeRegionRatio;
00569   unsigned long m_SizeOnBorder;
00570   double        m_PhysicalSizeOnBorder;
00571   double        m_FeretDiameter;
00572   VectorType    m_BinaryPrincipalMoments;
00573   MatrixType    m_BinaryPrincipalAxes;
00574   double        m_BinaryElongation;
00575   double        m_Perimeter;
00576   double        m_Roundness;
00577   double        m_EquivalentRadius;
00578   double        m_EquivalentPerimeter;
00579   VectorType    m_EquivalentEllipsoidSize;
00580   double        m_BinaryFlatness;
00581 
00582 };
00583 
00584 } // end namespace itk
00585 
00586 #endif
00587 

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